It’s taking a week for contact tracing to reach COVID-19 patients – Mission Local

Sushi is in the news of late. In yet another attempt to grab the brass ring of the defining San Francisco image in times of COVID-19, an enterprising restaurateur is offering diners the option of consuming $200-a-head sushi dinners in a cordoned-off corner of Mint Plaza, only a few meters from where homeless people congregate.

Conspicuous consumption an arms length from misery is commonplace enough in San Francisco that someone may want to think about translating that line into Spanish and making it our city motto on our new city flag. But what really pushes this moment into that wondrous realm of San Francisco self-parody is that diners are ensconced within tiny, transparent geodesic domes of the sort Buckminster Fuller might have designed for exhibitionists.

Well, nobody wants to think about that. But it did get us thinking about sushi. No matter how much you pay for sushi and no matter how good it is, its a substance with an extremely limited shelf life. Leave it sitting around for even a little while and, soon, its worthless.

And that got us thinking about San Franciscos attempts to corral COVID-19. In every realm that has managed to get a handle on this pandemic, the turnaround time between someone deciding to get a test, getting the results, and, if positive, being tracked down by a contact tracer and case investigator is minimal a day or two.

Ideally, says Dr. Darpun Sachdev, who heads the Department of Public Healths contact tracing efforts, it would only take 48 hours from someone developing symptoms and/or contemplating a test to receiving a call from a contact tracer.

But thats not happening. If you want to get a test in San Francisco, the current wait at city sites tends to hover between nine and 11 days. Getting your results can take several days more or, in all too many instances of late, the better part of two weeks.

These glacial turnarounds make a mockery of any attempt at contact tracing.

Among the multitudes of COVID data the city posts online, you wont find the elapsed time between someone being swabbed and receiving a call from a contact tracer.

But its there if you give the data a deep swabbing. And Peter Khoury did that.

The big blue dots indicate the weighted average of how long it takes to return results for a COVID test. The big red dots indicate the weighted average of how long it takes for contact tracers or case investigators to contact people who test positive. The small dots indicate how long it takes to reach the 90th percentile for both of the above. Chart by Peter Khoury.

The Mission District data scientist combed through the day-by-day testing results through the latter two-thirds of July, measuring how long it required for positive cases categorized as unknown to be reclassified as emanating from a known contact or the more ambiguous community spread.

That cant happen without a contact tracer or case investigator speaking to an individual and, in doing so, Khoury gleaned that it takes six to nine days after a person has had a swab shoved up their nose for them to receive a call from a contact tracer. Thats a weighted average but, we repeat, six to nine days.

In six to nine days, an individual can cough on half the residents of San Francisco. Pretty much all a contact tracer or case investigator can do after so much time has elapsed is watch the rear end of the horse as it disappears into the distance, having long since galloped out the barn door.

Youre not going to be effective with contact tracing if its more than three days, says Dr. John Swartzberg, a UC Berkeley clinical professor emeritus specializing in infectious diseases and vaccinology. Six-to-nine-day delays essentially negate the point of contact tracing. Its horrifying.

San Francisco, then, is putting great deals of money and effort and brainpower behind testing and contact tracing, but to what effect? This city has bought plate after plate of $200 sushi and left it to rot.

Like a Coen Brothers film, the above graphic Peter Khoury created warrants a few views. Theres just too much to take in on one go.

Everyones busy now, but its only nine seconds long. You have time.

Try focusing on just one column. Youll notice cases keep trickling in and being sorted, even days and weeks later.

After youve done that, watch how the yellow unknowns are gradually recategorized by case investigators into blue from known contact and orange community spread.

Its not quite playoff baseball at AT&T Park, but there is a lot of orange to see here. Too much: In June, the city was able to nail down the source of an infection just about as often as it was forced to assign the ambiguous community spread. But in July, with far more cases, community spread beat out from known contact by a 2-to-1 margin.

What does this mean? It means that not only is this city undergoing a COVID-19 surge, but we dont really know where its coming from and how its spreading.

The ratio of known to unknown origins is something for us to be paying attention to, says Sachdev. What we would ideally see in this epidemic, if we were able to control it, is more and more people being identified having had a known contact somebody with COVID-19 and thereby suggesting were on the right track.

But we arent. Rather, its the opposite of that.

The six-to-nine day delays really arent the fault of Sachdev or her charges; they cant start running until the baton is in their hands, and its just taking too damn long for that to happen. The data culled by Khoury, in fact, indicates that contact tracers are making calls pretty quickly: within hours or, at most, two days, of the city receiving results.

But when they do reach people, theyre not learning the information wed most want to know.

And thats bad news for everyone.

Dozens of people lined up before 7 a.m. to get tested on the first day of the 24th Street pop-up COVID-19 test site. By Annika Hom.

In case youre wondering, yes, peoples memories do fade significantly after a few days, rendering contact tracing even more difficult and ineffectual. Dr. Kim Rhoads isa UC San Francisco professor of epidemiology and biostatistics, and the director of community engagement for the cancer center. Shenotes that Oaklands Roots Clinic, anticipating long delays, simply hands test subjects a pen and pad and asks them to keep track of their contacts beforehand just in case.

This pen-and-pad technology would be a good idea here. And, no, San Francisco contact tracers dont ask you about going to stores or riding on the bus they focus on people you spent in-person time with for 15 minutes or more; unsurprisingly, most close contacts turn out to be family or roommates.

So we could do better. But thats not really the point.

Rather: Contact tracing is the governments coup de grce against COVID-19 if everything else is going well. But its hard to overstate how far that is from the case.

There is, right now, simply too much COVID-19 in the population for contact tracing to be effective.

Swartzberg pegs this at only about 3 percent. And thats around the ratio of positive tests in San Francisco these days.

With exponential spread, 3 percent well, you dont have enough contact tracers to balance the number of people to be contacted, adds Rhoads.

COVID positivity in the United States is nearing 2 percent: Contact tracing, nationally, will soon not be useful, she says.

That, too, is horrifying.

If it wasnt clear before, its crystal clear now that Ozarks Independence Day pool revelers and non-mask-wearing Texas mall shoppers and Georgia politicians forcing kids back into packed high schools were making grave mistakes.

But, albeit to a lesser extent, so were we. Considering the limited testing and contact tracing resources at its disposal, California and San Francisco clearly chose overly aggressive paths to re-opening.

And without adequate testing and contact tracing, we dont have too many more options other than shutting down.

Government officials arent wrong to urge people to wear masks and keep physically distant and wash their hands and, generally, not behave like selfish idiots. But, after a while, it feels like a dodge. We need to do all of these things, but unless we can effectively test and trace, we are doomed to a Groundhog Daylike repetition of re-openings and re-closings.

Like so much else these days, nobody knows when well develop that ability. Or if.

Were not going to go back to normal. So much will be destroyed after this, says Rhoads. And if where government isnt able to help, communities will have to help themselves.

Communities will need to build that up. I see this as practice on how to work together.

It is quite the silver lining to state well build a better world after this one crumbles.

But, like that COVID test slot 11 days down the road or aging sushi well take what we can get.

If you like our coverage, please support it. We count on our readers.

Here is the original post:

It's taking a week for contact tracing to reach COVID-19 patients - Mission Local

Related Posts

Comments are closed.