Scientists Uncover a New, Genetic Cause of Male Infertility—And It Appears to be Widespread | 80beats

spacing is important

What’s the News: What if the egg is fine and the sperm is dandy, but you still can’t seem to have a baby? Couples who are having trouble conceiving can testify to the frustration of learning that there’s no clear reason for their infertility. Now, however, scientists have found a genetic mutation that makes outwardly normal sperm much less fertile, potentially explaining many such cases and suggesting new routes to conception.

What’s the Context:

Infertility is defined as failure to conceive after a year of unprotected sex. About 10-15% of couples run into this problem.
Some cases of infertility are fairly easily explained: there may be a shortage of sperm, or they may be unable to swim far enough to make it to the egg. The eggs in turn may be malformed, or the womb may have conditions that make implantation of the fertilized egg difficult. But in about 20% of infertile couples, it’s not clear what is impeding the process.
When treating infertility, knowing the source of the problem is a big help. For instance, if the problem is the number of sperm, one option is concentrating sperm into a single sample and trying with ...


… and then there were none. | Bad Astronomy

At 09:57:54 GMT today, July 21st, 2011, the Space Shuttle Orbiter Atlantis rolled to a safe stop on Runway 15 at NASA’s Kennedy Space Center, marking the end of last Shuttle flight.

It flew 33 missions since its first launch in 1985, spending over 300 days in space and making nearly 5000 orbits of the Earth. It visited Mir, the ISS, and even Hubble.

With this landing, the Era of the Shuttle is over. But our presence in space is not. NASA still has working rockets that can carry machines into space, and is working on developing a new rocket system. Private companies are gathering the capability to go to space and to low-Earth orbit. Other countries still have the ability to take humans into space as well. As Americans we pride ourselves on our history of exploration and being the first. For now, that pride may have to wait.

But I’ll note that after Apollo 17, the last Moon landing, it was 8 years before the first Shuttle launch. I’m hoping the current gap that began this morning will last much less than that. I wish there were no gap at ...


Brain Cuttings Kindle: On mysterious sale for $3.99 | The Loom

Amazon has put my ebook, Brain Cuttings: Fifteen Journeys Through the Mind on sale for the gotta-get-it price of $3.99. If you want some information on the ebook, check out…

The Brain Cuttings page on my web site

A conversation with science writer Steve Silberman on Brain Cuttings and the future of science ebooks

A review by Vaughan Bell on his essential blog, Mind Hacks

And if the only information you need is “$3.99,” here’s where you can get a copy.

(PS–I have no idea why Amazon decided to put the ebook on sale, and have no idea how long the sale will last. So grab it now!)


Nuclear Decay Beneath Your Feet Accounts for Half of Earth’s Heat Output | 80beats

spacing is importantAtoms sometimes release alpha particles during radioactive decay.

What’s the News: An international team of researchers has completed the most precise measurement of the Earth’s radioactivity to date. By analyzing subatomic particles streaming out of the interior of the planet, the geologists and physicists discovered that the radioactive decay of several elements generates roughly half of the Earth’s total heat output. Their results were published recently in the journal Nature Geoscience.

What’s the Context:

Radioactive decay is a natural process where an unstable atom loses energy by emitting particles (thus decaying into smaller atoms). Radioactive decay can sometimes release neutrinos: tiny, electrically neutral, and nearly massless elementary particles that pass through most normal matter with little to no interaction. Because of their ability to phase through matter mostly unaffected, these ghostlike particles are very hard to detect.
Like all other particles, neutrinos have anti-siblings, called antineutrinos. A proton can sometimes capture an antineutrino, which then splits into a neutron plus a positron (an anti-electron). That positron will annihilate when it hits an electron, releasing energy that can be detected with very sensitive instruments, such as the Kamioka Liquid Scintillator Antineutrino Detector (KamLAND) deep in ...


Some non-effects of adoption | Gene Expression

I mentioned offhand to Trey of Genomes Are Us that I’d look around for the effect of adoptive environments on criminality (what with the recent concern about studying the genetics of criminal predisposition). Luckily I have Steve Hsu in my RSS, as he posted something of interest just yesterday, pointing me to this paper, The environments of adopted and non-adopted youth: evidence on range restriction from the Sibling Interaction and Behavior Study (SIBS):

Previous reviews of the literature have suggested that shared environmental effects may be underestimated in adoption studies because adopted individuals are exposed to a restricted range of family environments. A sample of 409 adoptive and 208 non-adoptive families from the Sibling Interaction and Behavior Study (SIBS) was used to identify the environmental dimensions on which adoptive families show greatest restriction and to determine the effect of this restriction on estimates of the adoptive sibling correlation. Relative to non-adoptive families, adoptive families experienced a 41% reduction of variance in parent disinhibitory psychopathology and an 18% reduction of variance in socioeconomic status (SES). There was limited evidence for range restriction in exposure to bad peer models, parent depression, or family climate. However, restriction in range ...

The end of evolutionary psychology | Gene Expression

A new paper in PLoS Biology is rather like the last person to leave turning the light off. Evolutionary psychology as we understood it in the 1980s and 1990s is over. Darwin in Mind: New Opportunities for Evolutionary Psychology:

None of the aforementioned scientific developments render evolutionary psychology unfeasible; they merely require that EP should change its daily practice. The key concepts of EP have led to a series of widely held assumptions (e.g., that human behaviour is unlikely to be adaptive in modern environments, that cognition is domain-specific, that there is a universal human nature), which with the benefit of hindsight we now know to be questionable. A modern EP would embrace a broader, more open, and multi-disciplinary theoretical framework, drawing on, rather than being isolated from, the full repertoire of knowledge and tools available in adjacent disciplines. Such a field would embrace the challenge of exploring empirically, for instance, to what extent human cognition is domain-general or domain specific, under what circumstances human behaviour is adaptive, how best to explain variation in human behaviour and cognition. The evidence from adjacent disciplines suggests that, if EP can reconsider its basic tenets, it will flourish as a scientific discipline.

Who knows heritability and what do they know | Gene Expression

Heritability is a fraught topic. It comes up repeatedly on this weblog, but even long time readers can be confused as to its implications, as evidenced by the incorrect inferences made from their own understanding of the concept. The most common problem is that too often people think that heritability is just a scienced up version of the colloquial idea of some traits being “more genetic” or “less genetic.” It’s not that at all. Traits totally specified in their details by genetic pathways can be non-heritable. That’s because heritability looks at the association between parents and offspring on a trait and attempts to separate the population-wide proportion of the variation attributable to genes and not attributable to genes. When you have a genetically specified trait, like the number of human fingers, you have no real variation within the population to work with (with some rare exceptions). It doesn’t make sense to talk about the heritability of the number of fingers, because this is a fixed trait in the human species.

In contrast, height is a perfect trait to illustrate heritability. Unlike behavioral or cognitive traits its measurement is clear, ...

NCBI ROFL: Domestic cats do not show causal understanding in a string-pulling task. | Discoblog

“This study explored how domestic cats perform in a horizontal string-pulling task to determine whether they understand this case of physical causality. Fifteen cats were tested on their ability to retrieve an unreachable food treat in three different set-ups: (a) a single baited string, (b) two parallel strings where only one was baited and (c) two crossed strings where only one was baited. All cats succeeded at pulling a single string to obtain a treat, but none consistently chose the correct string when two strings were parallel. When tested with two crossed strings one cat chose the wrong string consistently and all others performed at chance level. There was no evidence that cats understand the function of the strings or their physical causality.”

Photo: flickr/oskay

Related content:
Discoblog: NCBI ROFL: Optimizing the sensory characteristics and acceptance of canned cat food: use of a human taste panel.
Discoblog: NCBI ROFL: Introducing…the automatic LOLcat detector!
Discoblog: NCBI ROFL: Cooperation and individuality among man-eating lions.

WTF is NCBI ROFL? Read our FAQ!


Researchers Switch Off Gene in Mice to Switch on Endurance | 80beats

spacing is important

What’s the News: By knocking out a single gene, scientists at the University of Pennsylvania have significantly increased the physical endurance of lab mice, as explained in their recent paper in the Journal of Clinical Investigation. The researchers also found that certain variants of the same gene may be linked to greater endurance in humans.

How the Heck:

Past in vitro studies showed that a gene called IL-15R? is involved in controlling muscle contractions, which play a role in both muscle strength and endurance. But the gene has never been studied in a living animal, so physiologist Tejvir Khurana and his research team decided to engineer lab mice that lack IL-15R?.
They noticed that at night the altered mice ran six times farther than normal mice. When the team dissected the engineered mice, they found that their muscles had more fibers than normal mice, as well as a higher number of mitochondria, the power plants of cells. ...


Children share when they work together, chimps do not | Not Exactly Rocket Science

We are a cooperative ape, and a fair one. We work together to put food on the table and once it’s there, social rules compel us to share it around equitably. These two actions are tied to one another. In a new study, Katharina Hamann from the Max Planck Institute for Evolutionary Anthropology has shown that three-year-old children are more likely to fairly divide their spoils with other kids if they’ve worked together to get them.

The same can’t be said of chimpanzees, one of our closest relatives. Sharing comes less naturally to them, and it doesn’t become any more likely if they’ve worked together to get a meal.

Hamann says, “Among great apes, only humans are true collaborative foragers.” Other species might look for food together, but being next to one another is not the same as working together. The only exception are the hunting parties of chimps, where several individuals work together to kill monkeys for food. The slain monkeys are shared, but either under duress or in exchange for favours.

With children, things are very different. Studies have shown that children as young as five to seven start ...

Atlantis launch in 3D | Bad Astronomy

Tomorrow morning, July 21, at 5:56 a.m. EDT (09:56 GMT), the Space Shuttle Orbiter Atlantis is scheduled to set wheels down on Earth one last time. When it launched, though, pictures were taken as the rocket rolled that allowed Nathaniel Burton-Bradford to create a 3D red/cyan anaglyph:

[Click to enlaunchenate.]

I posted another 3D image he made of Atlantis, too, and he has one of the ISS he just made as well. If you don’t have red/cyan glasses, you can search for ‘em online. They’re pretty cheap, and I do sometimes link to pictures like this… like in Related Posts below. It’s totally worth a buck, just for that moment of "wow".

Credit: NASA, Nathanial Burton Bradford

Related posts:

- 3D Apollo
- The lumpy, 3D Earth
- Phobos is, like, totally groovy
- 3D House of Comet Nucleus


NASA Astrophysics: It Really Is This Bad | Cosmic Variance

Shorter House of Representatives: NASA shouldn’t do astrophysics anymore. Via the Tracker, an article by Eric Hand in Nature News that puts the fiasco in helpful graphical form.

Misleading graphic alert! The vertical scale starts at $0.5 billion, not at $0. But taking that into account merely changes the situation from “complete annihilation” to “devastating harm.” We’re talking about a 40% cut, which won’t leave room to do much more than keep the lights on for existing programs.

The 2011 numbers are the President’s budget request; the 2012 numbers are from the bill that passed the House. This isn’t yet law, so there’s still time; the Senate and the White House will (thankfully) be involved in the final compromise.

Times are tough, and not everything is worth doing. But there are few things more important to the long-term flourishing of a country than investment in basic science. Sad to see the future sacrificed for bizarre political reasons.


Being Clear As To Who Actually Cancelled The Shuttle

Statement by Gov. Rick Perry on Final Landing of Shuttle Atlantis

"Unfortunately, with the final landing of the Shuttle Atlantis and no indication of plans for future missions, this administration has set a significantly different milestone by shutting down our nation's legacy of leadership in human spaceflight and exploration, leaving American astronauts with no alternative but to hitchhike into space."

Perry launches on Obama for cutting NASA, Dallas News

"... Perry went on to say that, "this administration has set a significantly different milestone by shutting down our nation's legacy of leadership in human spaceflight and exploration, leaving American astronauts with no alternative but to hitchhike into space." Actually, it was the Bush Administration that decided to end shuttle missions, and the Obama Administration extended the life of the shuttle program by adding two additional flights."

President Bush Announces New Vision for Space Exploration Program, White House

"The Shuttle's chief purpose over the next several years will be to help finish assembly of the International Space Station. In 2010, the Space Shuttle -- after nearly 30 years of duty -- will be retired from service."

GAO on Parts Quality Problems at DoD and NASA

Space and Missile Defense Acquisitions: Periodic Assessment Needed to Correct Parts Quality Problems in Major Programs, GAO

"Quality is key to success in U.S. space and missile defense programs, but quality problems exist that have endangered entire missions along with less-visible problems leading to unnecessary repair, scrap, rework, and stoppage; long delays; and millions in cost growth. For space and missile defense acquisitions, GAO was asked to examine quality problems related to parts and manufacturing processes and materials across DOD and NASA. DOD and NASA should implement a mechanism for periodic assessment of the condition of parts quality problems in major space and missile defense programs with periodic reporting to Congress. DOD partially agreed with the recommendation and NASA agreed. DOD agreed to annually address all quality issues, to include parts quality."

How Congressional Budget Uncertainties Affect Science

Exobiology 2010 Update #4

"As you know, federal spending is under intense scrutiny. In addition, the timing of the federal budget review and approval process has been less than ideal. These developments have affected our ability to manage Astrobiology Program funds as effectively as we would like. Over the past decade, the proposal due date for the Exobiology Program has moved from June to August, then to September, and, finally, to October. This shift has moved starting dates for new grants later into the federal fiscal year and thus placed greater budget pressure on the Astrobiology Program."

Rejoice Comrades! Glorious Era of Soyuz Begins (Update)

Russia declares 'era of Soyuz' after shuttle, AFP

"Mankind acknowledges the role of American space ships in exploring the cosmos," it added. But Roskosmos also used the occasion to tout the virtues of the Soyuz (Union) spacecraft, which unlike the shuttle lands on Earth vertically with the aid of parachutes after leaving orbit. It said that there was a simple answer to why the Soyuz was still flying after the shuttles retired -- "reliability and not to mention cost efficiency."

Keith's note: How nice of our friends at Roskosmos to rub our noses in their monopoly today. Oh well, we created this situation through both deliberate intent and bumbling over the past decade. Well played, comrades. Enjoy it while it lasts. By overcharging in the obscene, escalating fashion that you have done during our periods of need, you are sowing the seeds of your own demise by spurring lower cost alternatives. All too soon, American spacecraft will do everything Soyuz does - and more - and will do so much better - and cheaper.

Keith's update: Yea, in case you had not noticed, I am really pi**ed off by this whole situation and how the Russians (whose space program we overtly subsidized since the 1990s) are dancing in response to our bad decisions and crappy predicament. Oh well, it will be fun to watch Russia wiggle as China flies the real Soyuz upgrades - and then as SpaceX et al beat Russia and China on both price and performance.

Looking Back, Looking Forward, and Pointing Fingers

United Launch Alliance Congratulates NASA as Shuttle Ends 30 Years of Spaceflight

"In addition, under the Commercial Crew Program, ULA is proud to be the launch vehicle of choice for Sierra Nevada's Dream Chaser and Blue Origin's Space Vehicle, and compete to support Boeing's CST-100 program. Working together with NASA, these established companies and entrepreneurs plan to usher in a bold new era of human spaceflight; not only transporting NASA astronauts to the International Space Station, but opening spaceflight to non-government passengers for the first time."

As Atlantis Lands, Adams Recognizes the Ending of an Era

"NASA's 30-year Space Shuttle Program has been more than just space exploration to Florida families, it's part of their history, it's their livelihoods, and it's been a source of inspiration for the tens of thousands of people who have supported its operations and have made their homes in our great state."

Statement by Gov. Rick Perry on Final Landing of Shuttle Atlantis

"The Obama Administration continues to lead federal agencies and programs astray, this time forcing NASA away from its original purpose of space exploration, and ignoring its groundbreaking past and enormous future potential. It is time to restore NASA to its core purpose of manned space exploration, and to define our vision for 21st Century space exploration, not in terms of what we cannot do, but instead in terms of what we will do."

Shuttle Era Ends

Wheels Stop - As Atlantis Lands the Shuttle Era Comes to an End, SpaceRef

"At 5:57:54 a.m EDT the orbiter Atlantis came to a wheels stop at the Kennedy Space Center runway 15 marking the end of the Space Shuttle era."

NASA Administrator Commemorates Final Space Shuttle Landing, NASA

"At today's final landing of the space shuttle, we had the rare opportunity to witness history. We turned the page on a remarkable era and began the next chapter in our nation's extraordinary story of exploration."

NASA's Proud Space Shuttle Program Ends With Atlantis Landing, NASA

"The brave astronauts of STS-135 are emblematic of the shuttle program -- skilled professionals from diverse backgrounds who propelled America to continued leadership in space with the shuttle's many successes," NASA Administrator Charles Bolden said. "This final shuttle flight marks the end of an era, but today, we recommit ourselves to continuing human spaceflight and taking the necessary- and difficult - steps to ensure America's leadership in human spaceflight for years to come."

Planetary Society Statement On the End of the Space Shuttle Program, Planetary Society

"Mission accomplished! It's been thirty great years for the Space Shuttle program. With this venerable space vehicle retired, it's on to the next adventure.

"The Space Shuttle has taken more than 10,400 tons into orbit, a fantastic legacy, as most of that equipment is still up there helping astronauts do their jobs. But now it's time to move up and on -- outward. We can make new discoveries peering beyond new horizons."

Saying farewell to Atlantis and the Shuttle program in the Mission Control Room in Houston.

Attempts to Save Webb?

Recent Policy Activity on James Webb Space Telescope and Pu-238, AAS

"Rep. Wolf and Rep. Fattah are highly likely to work out a deal to restore JWST funding before the bill goes to the House floor, perhaps involving enhanced language spelling out detailed project oversight requirements. The AAS is pursuing a strategy to directly encourage a solution in the House during floor debate by working with key individual legislators and to secure support from the Senate to restore funding in the Senate version of the FY2012 appropriations."