Up-to-date News from BioImagene

The folks over at BioImagene sent over a summary of the latest BioImagene news.  Over the past several months they have brought several new products and applications to market.

Had a chance to see try out the slide input device and thought the responsiveness and accuracy was very good.  As I have mentioned before, the mouse is not the best human user interface tool and perhaps this is one more step towards moving digital pathology to "as fast as glass". 

Check out their other products and services below.

Digital pathology (DP) applications are gaining acceptance in the clinical, academic, and research markets, and BioImagene is at the forefront of several innovative technological advances sweeping this industry.

In the past few months, BioImagene has launched a new slide scanner, announced the availability of a new input device to transform the viewing experience of digital pathology images, unveiled a new version of its DP software, and entered into collaborations with several leading pathology vendors and academic medical centers, to further the development of next generation digital pathology solutions.

This email will keep you up-to-date on the latest BioImagene news from the past few months, by summarizing our most recent press releases:

BioImagene launched the iScan Coreo Au Slide Scanner and
Introduced the next generation of Virtuoso Digital Pathology Software
.

This marked a key milestone for the industry as it unequivocally took the speed of scanning and viewing to benchmark levels.

BioImagene’s Virtuoso digital pathology workflow software is now integrated with several market-leading anatomic pathology (AP) laboratory information systems (LIS).

The Virtuoso - LIS integration enables sharing of data between the two systems in the pathology laboratory, making critical information readily available to pathologists, and increasing pathology efficiency.

BioImagene adds New Companion Algorithms for Colon Cancer in their Virtuoso Digital Pathology Software.

Virtuoso is the only digital pathology software in the industry today to offer users Companion Algorithms to reproducibly quantify immuohistochemical stains used in breast, prostate, and colon cancers.

BioImagene announced the availability of the iSlide input device, an innovative device that allows pathologists to use a microscope-like interface to manipulate digital images of slides.

BioImagene is also the platinum sponsor of PathXchange (Px), a leading social networking tool for the pathology community. Px conducted its first trans-Pacific digital case conference between two leading hospitals in Mumbai, India and the University of Nebraska Medical Center (UNMC).

PathXchange (Px), also announced the launch of Px Athena, an eLearning management system with Web 2.0 capabilities. Px Athena utilizes digital pathology technologies to provide a comprehensive online research and education solution to the academic pathology communities.

BioImagene also recently attended the annual USCAP meeting where we conducted a seminar series on digital pathology, amongst other events. To view a video of our presence at the meeting, click here.
To learn more about our company, please visit http://www.bioimagene.com.

Errata and miscellaneous news

OK.  Lot of e-mails on my previous post about the post office and healthcare.  Apparently readers are unable to comment on the blog.  Since Typepad changed their platform to compose posts this has been a recurring problem. I have always kept comments open and unmoderated.  Will ask Typepad to look into this again.  The good news is there are no spam comments either.

Someone mentioned it costs 44 cents to mail a letter.  Not 42 cents.  Thanks for the correction.

In other news, Walgreens has decided not to sell Pathway Genomics genetics kits since the FDA has intervened.  I was really hoping I could run down to my corner drugstore and pick one of these up.  I think it wise for the FDA to do what they did and for Walgreens to postpone for the time being retailing this product.  There are still too many unanswered questions someone may be left with to have the ability to manage without appropriate reason for screening.

And finally, the US Census Bureau confirms preliminary data that more US residents claim a jail cell rather than a college dormitory room as their residence. Let's hope college students weren't as diligent about returning the forms or were counted elsewhere skewing the data.

FAU gets its own medical school – MiamiHerald.com

FAU gets its own medical school
MiamiHerald.com
Florida Atlantic University's is set to begin its own medical school, after Gov. Charlie Crist signed off on legislation authorizing its establishment. ...
Crist signs bill to launch FAU's medical schoolPalm Beach Post
Governor approves FAU's own medical education programUniversity Press
Crist Signs Legislation Authorizing FAU Medical ProgramWPBF West Palm Beach
Orlando Sentinel
all 13 news articles »

Following Conservative Win in UK, Center Right parties appear headed for Victory in the Netherlands

But Geert Wilders' Freedom Party behind Peoples Party and Christian Democrats

From Cliff Thies:

Recent polling data suggest that the three main center-right parties of the Netherlands appear headed for a majority in the upcoming June 9th snap election.

Among the three center-right parties, the market-liberal Peoples Party looks be finish strongest (and would presumably name the country's next Prime Minister), followed by the conservative Christian Democrats, and the populist Freedom Party.

Again, according to recent polling data, these parties will secure 77 of the 150 seats in the Dutch parliament, enough to form a government. The four main center-left parties - the Social Democrats, Socialists, Greens and Democrats - will secure 64 seats, the centrist Christian Union 6, and two very small parties the remaining 3.

Were these figures to be realized, the Peoples Party and Christian Democrats would probably be forced to deal with the Freedom Party.

Note - Wilders PVV is in many ways a breakaway from the Christian Democrats. He himself was originally a member of the Christian Democrats.

Another grand coalition is not advisable given the failure of the former grand coalition which precipitated the snap election, and the centrist Christian Union won't have enough seats. A coalition of the three center-right parties would require some compromise or accommodation of the divergent social positions of these parties, but this has happened previously in post-war Netherlands.

Note - Hans Viegel, former Deputy Prime Minister of the Peoples Party has openly advocated closer ties to Geert Wilders and the Party of Freedom, along with a coalition of Rita Verdonk's (photo) Proud of the Netherlands movement. Photo above Geert Wilders with current Peoples Party leader Mark Rutte.

The Barefoot Professor says barefoot running could minimize injuries

NatureVideoChannel — January 27, 2010 — Harvard professor Daniel Lieberman has ditched his trainers and started running barefoot. His research shows that barefoot runners, who tend to land on their fore-foot, generate less impact shock than runners in sports shoes who land heel first. This makes barefoot running comfortable and could minimize running-related injuries. Find the original research here: http://dx.doi.org/10.1038/nature08723

Humans have engaged in endurance running for millions of years1, but the modern running shoe was not invented until the 1970s. For most of human evolutionary history, runners were either barefoot or wore minimal footwear such as sandals or moccasins with smaller heels and little cushioning relative to modern running shoes.

Posted at Clinical Cases and Images. Stay updated and subscribe, follow us on Twitter and connect on Facebook.


Childhood diabetes associated with increasing birth weight – 7% increase in risk for every 1000 g in weight

Childhood onset diabetes is associated with increasing birth weight, equivalent to a 7% increase in risk for every 1000 g in weight.

Caesarean section increases the risk by around 20%.

The risk of childhood onset diabetes increases with maternal age: 5% for each five years of age.

References:
Maternal age and diabetes in childhood. BMJ 2010;340:c623.

Image source: Wikipedia, GNU Free Documentation License.

Posted at Clinical Cases and Images. Stay updated and subscribe, follow us on Twitter and connect on Facebook.


Morbid Magicians, Demented Doctors, and Sinister Swamis: The Golden Age of the American Spook Show, Observatory, Monday, May 17


This Monday, Morbid Anatomy presents at Observatory "Morbid Magicians, Demented Doctors, and Sinister Swamis: The Golden Age of the American Spook Show," an illustrated lecture by Shane Morton of the Atlanta Silver Scream Spook Show. As an added bonus, DJ Davin Kuntze has promised to play his beloved Victrola until the night ends or until he runs out of needles, whichever comes first. So as you can see, this is a night not-to-be-missed. Full details follow; hope to see you there!

Morbid Magicians, Demented Doctors, and Sinister Swamis: The Golden Age of the American Spook Show
An Illustrated lecture by Shane Morton of Atlanta’s Silver Scream Spook Show

Date: Monday, May 17

Time: 8:00 PM

Admission: $5

There was a time when morbid magicians, demented doctors, and sinister swamis ran wild over this country! Audiences packed in to witness live midnight performances of ghosts being conjured above their heads, raging gorillas grabbing women from their seats, and Frankenstein’s Monster stomping loose through darkened movie palaces! The 1930’s-50’s was the golden era of a now virtually lost performance art form. But what resonated with people then, remains powerful to us today. Find out all about the fascinating world of the great American spook show at tonight’s lecture, which will give your goose pimples goose pimples, and scare the yell out of you!

Shane Morton is an artist, performer and musician from Atlanta, Georgia. He runs the Silver Scream Spook Show, the only spook show to exist in over a generation. You can find out more about Morton and his work at http://wwww.silverscreamspookshow.com and http://www.myspace.com/silverscreamspookshow.

You can find out more about this presentation here. You can get directions to Observatory--which is next door to the Morbid Anatomy Library (more on that here)--by clicking here. You can find out more about Observatory here, join our mailing list by clicking here, and join us on Facebook by clicking here. Click on image to see larger version.

Atlantis to Launch Tomorrow

Current Status: GO

Launch Date: Friday, 2:20 pm ET (10 minute window)

Odds of Launch: 70 percent

Shuttle: Atlantis (OV-104) – Sad to say this is the final scheduled flight for Atlantis.

Mission: STS-132

Mission Length: 12 days

EVA’s: 3 (on flight days: 4,6,8)

Primary Objectives: deliver an Integrated Cargo Carrier and a Russian-built Mini Research Module to the
International Space Station.

Commander: Ken Ham

Pilot: Tony Antonelli

Mission Specialists: Garrett Reisman, Michael Good, Piers Sellers and Steve Bowen


Launch Pad 39A — Webcam Image courtesy: NASA/Kennedy Space Center

NOAA’s Forecast:

Tomorrow: Sunny, with a high near 83. East southeast wind between 10 and 15 mph.

To keep current with the news about the launch, I recommend you go to NASA’s Launch Blog which should be live around 9:00 am ET. You will need to refresh your browser to get the latest from that site, but it’s THE place to get the up to the minute stuff especially if you can’t watch NASA TV.

I will be watching the launch itself on NASA-TV

Image Credits: NASA / NOAA

Biology of Genomes tweeted | Gene Expression

Check out the #bg2010 hash-tag on twitter. There’s a lot of interesting tidbits. Here are some tweets from the presentation on the Neandertal genome in relation to the Denisova hominin (a.k.a. “X-woman”):

lukejostins SP: The Denisova finger is from the Neanderthal line, but didn’t interbreed with humans, hence looking like an outgroup

dgmacarthur: SP claims that Neanderthals and Denisova archaics are more closely related than either are to humans; intriguing.

dgmacarthur: SP: next steps: generate 10-20X coverage of Neanderthal, sequence other archaic humans (e.g. Denisova).

I hope Dr. Daniel MacAthur and Luke Jostins will say more when they get back to Perfidious Albion.

Why science fiction matters for people who don’t read science fiction | Gene Expression

Mythologist of Our Age: Why Ray Bradbury’s stories have seeped into the culture:

Science fiction dates as quickly as any genre, and Bradbury is not entirely immune to this. The futuristic rocket ships he wrote about in 1950 look a lot like the first-generation NASA rockets; the music of the future is Rachmaninoff and Duke Ellington; and in the terrifying “Mars is Heaven,” the planet bears an eerie resemblance to Green Bluff, Ill., right down to Victorian houses “covered with scrolls and rococo.” But the reason Bradbury’s stories still sing on the page is that, despite all his humanoid robots, automated houses, and rocket men, his interest is not in future technologies but in people as they live now—and how the proliferation of convenient technology alters the way we think and the way we treat each other.

savionoOne of the aspects of science fiction as a genre is that the masters of the field when viewed from outside of the core science fiction reading audience are often not necessarily dominant within the subculture. The core science fiction readership, those who immerse themselves in the genre, and might actually show up at a science fiction convention, are not the typical casual readers who might pick something up at the airport bookstore. They’re disproportionately male, disproportionately virgin, disproportionately young, and disproportionately nerdy, with a strong technical bent. For a quantitative overview of the reality of the demographic assertions I’m making, I point you to William Sims Bainbridge’s Dimensions of Science Fiction. For a more impressionistic “insider” view, you might check out Isaac Asimov’s memoirs. For examples of the “literature” which confirm that the audience for science fiction is really peculiar, I point you to Hal Clement’s oeuvre. His stories and novels would simply be unpublishable outside of the confines of the genre, they’re difficult to read for the typical person. Certainly there is action-packed space opera galore, socially conscious works of Ursula K. Le Guin, and authors who can be called literary stylists, such as Gene Wolfe. But these are in some ways deviations from type (notably, Le Guin and Wolfe are more fantasists than science fiction authors).

The heart of science fiction as a genre is “hard science fiction,” the other variants are to a great extent dilutions or modifications on the elements which you find within hard sf, with its outward focus on space, future orientation, and its embeddedness in a world where engineering is paramount. It is also notable that authors who become prominent outside of science fiction are not necessarily thought of as science fiction authors once they’ve achieved mainstream success. Sometimes this is due to the author’s own wishes, case in point being Kurt Vonnegut, who in his early years published in genre pulp magazines before becoming a literary sensation. Vonnegut pulled off the equivalent of going from working in porn to being a mainstream actor.

This weirdness of science fiction is due, I think, to the psychological diversity of mankind. Socially awkward teenage men with minimal interpersonal skills and no sexual experience with the opposite or same sex, but great fluency in the language of technology and science, are going to produce fiction which reflects their experiences, priorities and biases. They will consume fiction which reflects their experiences, priorities and biases. One reason that science fiction has traditionally been weak on character development is that many of the writers and readers are themselves tone deaf to the textured reality of most human social experiences (reading Isaac Asimov’s memoirs it seems clear that many of the early science fiction writers and fans were nerdy types who lacked social skills but made up for it with their raw intelligence).

All this makes it comprehensible why Ray Bradbury’s work has seeped into our culture; his works are only superficially science fiction. They have the exterior of science fiction, but at their heart they speak to the typical man on the street, not the nerds who form the genre’s core. Bradbury shrugged off his technical blunders without much self-consciousness. His errors were so numerous and blatant that fans, editors and critics such as Damon Knight took to mocking him in print. This is not to say that most science fiction is very technically coherent or thought out. Obviously it isn’t, else the authors wouldn’t be writers, they’d be NASA engineers designing FTL space ships. But Bradbury’s errors were often embarrassing howlers which went beyond the pale. But that’s fine for the general public, their focus would be on Bradbury’s abilities to write compelling characters and weave narrative which speaks to non-scientific issues. Which is why Ray Bradbury matters to the general public, and Larry Niven does not, and someone who considers themself a “crunchy conservative” and traditionalist Christian was intrigued by the possibilities in his fiction. Reality check: if someone who is enamored with St. Benedict and the Church Fathers thinks your literature might speak to him, you probably aren’t producing very good science fiction (as opposed to fiction).

Note: I’m focusing here on people who have read science fiction in book form. Not people who like Star Trek films. Science fiction films are generally space opera for obvious reasons, and some such as Star Wars really have more fantasy than science fiction elements (though there is good evidence that Star Wars took many of its ideas from 1930s space opera, especially E. E. Smith’s stories).

Image Credit: IMDB

NCBI ROFL: Unpleasantness and physiological responses in using sanitary napkins. | Discoblog

"This study investigated the physiological and psychological effects of sanitary napkins (SN) on women in hemorrhage treatment during the menstrual phase. Mesh and non-woven napkins were employed, and the effects were studied during the follicular and menstrual phases; mesh SN presented a higher textural surface-roughness. In both phases, the increases in systolic and diastolic blood pressure were significantly dependent on the application intervals. The low-frequency component of systolic blood pressure variability significantly increased, while the salivary secretion rate decreased with the use of mesh SN during the follicular phase compared with non-woven SN. In addition, the heart rate during the menstrual phase significantly increased in subjects after the replacement of mesh SN compared with non-woven SN. In cases of wearing the unpleasant mesh SN, electroencephalography (EEG) manifested bilateral enhancements in beta and alpha2 waves in the frontal areas increased arousal level during both phases. From the above findings, napkin use increased physiological loading and wearing napkins with higher textural surface-roughness tended to increase activities of the autonomic nervous system and brain arousal level." Related content:
Discoblog: NCBI ROFL: Uh, no. Aunt Flo means no ho, bro!
Discoblog: NCBI ROFL: Best materials and methods ever.
Discoblog: NCBI ROFL: analysis taken too far WTF is NCBI ROFL? ...


SETIcon update | Bad Astronomy

seti_instituteI’ll be at SETIcon, a celebration of 50 years of the Search for Extraterrestrial Intelligence, August 13 – 15. It’ll be a lot of fun, featuring some famous scientists and actors from Star Trek.

Part of the festivities will be a night of Rock Band hosted by me. If people pander enough, then I might take the stage as well. Can I sing or play drums? Come and find out.

They’ve also announced some new guests, including my friends Robert Sawyer (who wrote the novel Flash Forward) and astronomer Gibor Basri, who was a panelist on the recent Quest for a Living World event I moderated last month. Gibor is actively involved in the Kepler mission, which is looking for new Earths orbiting other stars.

Also — and this is very cool — there will be a copy of the novel Contact signed by Carl Sagan, Jodie Foster, and Jill Tarter auctioned at the event. Cripes, I may bid on that myself.

I plan on having a blast. I wind up working hard at these meetings a lot of the time, but for this one I think there will be some kicking back and actually enjoying it. You should come, too.


Found: The Genes That Help Tibetans Live at the Top of the World | 80beats

Tibetan_ladyTibetans not only occupy one of the most extreme locations on Earth, they’ve been doing it for thousands of years. This week in a study in the journal Science, scientists have for the first time picked out the particular genetic features that allow these people to survive in the low oxygen levels of the Tibetan Plateau, which is around 15,000 feet above sea level. Curiously, the way they have evolved to survive is unlike that of other high-altitude dwellers around the world.

The American and Chinese researchers doing the study started by keying on 247 genes that looked like good candidates—they tended to change across populations, and seemed to play a role in controlling a person’s blood oxygen level.

Then they analyzed segments of DNA that include those 247 genes in 31 unrelated Tibetans, 45 Chinese, and 45 Japanese lowland people whose DNA was genotyped in the HapMap Project. By identifying regions that had a characteristic signature of being strongly altered by natural selection, they were able to identify relatively new gene variants that had swept through highland Tibetans, but not Chinese or Japanese lowlanders [ScienceNOW].

Ten of the genes turned out to be particularly promising, with two, called EGLN1 and PPARA, showing up in the Tibetans who had the lowest levels of oxygen in their bloodstream.

That sounds strange at first. Typically, people who visit high-altitude locales tend to develop higher red blood cell counts and high concentrations of hemoglobin—which carries oxygen from the lungs—as their bodies try to adapt to the decreased oxygen in the atmosphere. Even some permanent mountain dwellers, like people in the Andes Mountains of South America, show this pattern. They’ve adopted high hemoglobin concentrations to survive there.

But not so the Tibetans. Increasing one’s hemoglobin can make blood too viscous, which is part of the reason people who visit Tibet often end up suffering health problems. Instead, over the presumably many thousands of years in Tibet, the people evolved to live with relatively low concentrations of hemoglobin, which must then act with great efficiency to keep enough oxygen in their blood. Scientists had seen this before, but now that they have pinned down some of the genes responsible, they can begin to investigate how exactly the Tibetans’ systems pull this off.

“What’s unique about Tibetans is they don’t develop high red blood cells counts,” Dr. Josef T. Prchal, study co-author and a hematologist and professor of internal medicine at the University of Utah, said in a news release. “If we can understand this, we can develop therapies for human disease” [BusinessWeek].

Related Content:
80beats: Tiny Soot Particles May Be Melting Mighty Himalayan Glaciers
DISCOVER: High-Altitude Determines Who Survives in Tibet
Bad Astronomy: From Tibet to Infinity And Back Again
Gene Expression: Tibet & Tibetans, Not Coterminus

Image: Wikimedia Commons


New Contraceptive Wins Gates Money: Blasting Testicles w/Ultrasound | 80beats

sperm220We mentioned on Monday that Bill Gates was giving $300,000 to a geoengineering scheme that would shoot seawater skyward to seed clouds. But the billionaire doesn’t just wanted to save the planet and stop the AIDS crisis—he would also like to improve your sex life.

The Bill & Melinda Gates Foundation funded 78 promising but offbeat projects this week, one of those gifts being $100,000 to James Tsuruta and Paul Dayton of the University of North Carolina to pursue their idea of using ultrasound as a temporary and reversible male contraceptive.

Ultrasound produces a mild heating that appears to disable sperm cells and deplete the supply of stem cells that are required to replenish sperm reserves in the testes. Post-treatment images of the rat testes showed the tubules inside the testes completely lacking in sperm with almost no immature stem cells [The Times].

The scientists have already tried the test on male rats, with promising results. With the Gates’ money and more success in animal trials, they could extend this to human tests by next year, Tsuruta says.

“Our long-term goal is to use ultrasound from therapeutic instruments that are commonly found in sports medicine or physical therapy clinics as an inexpensive, long-term, reversible male contraceptive suitable for use in developing to first world countries” [BBC News].

First, however, they have to fully understand the process. It’s not clear exactly how the mechanism works—we know sperm don’t like excessive heat, but the scientists say it could be heating and shaking working in combination. The Times says that tests have show no long-term damage to the cells that produce sperm. But that doesn’t mean men will line up for this treatment when and if it’s approved.

Allan Pacey, a senior lecturer in andrology at the University of Sheffield, said: “There is certainly a place for an effective non-hormonal contraceptive in men, but whether men would find it acceptable to have their testicles scanned regularly remains to be seen” [The Times].

Related Content:
80beats: Bill Gates Funds Seawater Cloud Seeding, “The Most Benign Form of Geoengineering”
80beats: With $4.5 Million of Pocket Change, Bill Gates Funds Geoengineering Research
80beats: Bill Gates Patents a Device Aimed at Halting Hurricanes
Discoblog: Warning All Male Competitive Cyclists: Less Than 5% of Your Sperm May Be Normal

Image: iStockphoto


Wash Post Hits Cuccinelli Once Again | The Intersection

UVA is filing an extension in response to Cuccinelli's egregious request--but it should be fighting back in court, writes the paper:
Mr. Cuccinelli, apparently, speculates that Mr. Mann defrauded taxpayers by obtaining research grants to study global temperatures. It's clear from his statements that the "Climategate" controversy -- in which hackers stole records of e-mails between climate researchers that global warming skeptics then distorted -- inspired his witch hunt. Is there any doubt that the attorney general is trying to restoke that row with a fresh batch of e-mails?
In the process, he would deal grave harm to scientific inquiry throughout Virginia's public higher education system. Science progresses when researchers can propose ideas freely, differ in their methods and argue about the interpretations of their results. The commonwealth should nurture that process, not make scientists fear that they will be subject to investigation if a politician dislikes their conclusions. There comes a time when one has to stand up to bullying tactics--not to mention fundamental assaults on the ability of scientists to do their work. This is one of those times. UVA needs to stand up and be counted in defense of reason.