Smokers With Lung Cancer Have Tenfold Genetic Damage

Featured Article Academic Journal Main Category: Smoking / Quit Smoking Also Included In: Lung Cancer;Genetics Article Date: 17 Sep 2012 - 12:00 PDT

Current ratings for: Smokers With Lung Cancer Have Tenfold Genetic Damage

Senior author Richard K. Wilson is director of The Genome Institute at Washington University School of Medicine in St. Louis in the US. He says in a media statement that none of his team was surprised that the genomes of smokers with lung cancer had more mutations than the genomes of never-smokers with the disease:

"But it was surprising to see 10-fold more mutations. It does reinforce the old message - don't smoke," he adds.

Within non-small cell there are also three further classifications: adenocarcinomas (usually found in an outer area of the lung); squamous cell carcinomas (usually found in the center of the lung next to a bronchus or air tube); and large cell carcinomas (these can occur in any part of the lung and tend to grow and spread faster than the other two classes).

In their paper, the researchers describe how they carried out "whole-genome and transcriptome sequencing of tumor and adjacent normal tissue samples" from all 17 patients.

Across all 17 patients they identified just over 3,700 mutations, with an average mutation frequency more than 10-fold higher in the smokers compared to the never-smokers.

However, the researchers can't say whether these will work on these mutations in lung cancer patients, as first author Ramaswamy Govindan, an oncologist who treats patients at Siteman Cancer Center at Barnes-Jewish Hospital and Washington University, explains:

"Whether these drugs will actually work in patients with these DNA alterations still needs to be studied."

"But papers like this open up the landscape to understand what's happening. Now we need to drill deeper and do studies to understand how these mutations cause and promote cancer, and how they can be targeted for therapy," he adds.

Read the original post:

Smokers With Lung Cancer Have Tenfold Genetic Damage

Freedom Run Ends with Ball Four in Extras

September 17, 2012 - Frontier League (FL) Florence Freedom Marion, IL-The Southern Illinois Miners won their first ever Frontier League Championship on a bases loaded walk in the twelfth inning to defeat the Florence Freedom Sunday night 4-3. The Miners won the best of five series three games to one.

The Miners jumped out to a 3-0 lead in the fourth inning. Javier Herrera scored on a throwing error by second baseman Pierre Lepage and Chad Maddox hit a two run homerun.

The Freedom got on the board in the seventh. Jim Jacquot led off the inning with a walk. Stephen Cardullo then singled into centerfield. Alvaro Rameriz misplayed the ball which allowed both runners to score.

The Freedom then tied the game in the eighth. With the bases loaded Jacquot reached on a fielder's choice scoring Kyle Bluestein to tie the game at 3-3.

The game went into extra innings with neither offense scoring until the twelfth. Jorge Marban(1-1)took the loss as he walked the leadoff batter Maddox. Carlos Mendez then advanced him to second base on a sacrifice bunt. Sean Coughlin then drew a walk. After Cannon Lester struck out swinging, Will Block was intentially walked to load the bases by Brent Choban. With the bases loaded and two outs, Choban faced Jake Kaase. With the count 3-2, Choban walked Kaase to force home Maddox to give the Miners the game winning run.

Andy Clark started the game for the Freedom and went five innings allowing five hits on two earned runs and earned a no decision. Brandon Mathes then pitched six strong innings allowing three hits and striking out eight in his appearance out of the bullpen keeping the Freedom in the game.

Peter Fatse and Stephen Cardullo each had three hits to lead the Freedom in their final game of the season.

The 2012 team ended up winning 57 games which was the most in franchise history since the team moved to Florence in 2003. They also became the first team in franchise history to play in the postseason and in the Frontier League championship series.

Discuss this story on the Frontier League message board... Digg this story Add to Del.icio.us

The opinions expressed in this release are those of the organization issuing it, and do not necessarily reflect the thoughts or opinions of OurSports Central or its staff.

See original here:

Freedom Run Ends with Ball Four in Extras

Freedom cross campaign growing in Steubenville

STEUBENVILLE - A group of parishioners from the Holy Family Catholic Church have organized a yard freedom cross campaign they hope will spread across the city and country.

Don Jordan said the idea for freedom crosses was prompted by the Freedom From Religion Foundation threat to sue the city over an unofficial logo that includes a cross and the silhouette of the Christ the King chapel on the Franciscan University of Steubenville campus.

"We had a number of concerns regarding the foundation that threatened to sue the city. We felt it was an attack on our religious freedom. Our bishops have urged Catholics to pray, fast and take action in response to the attack on our religious freedom. This is our way of taking action," explained Jordan.

FREEDOM Robert Lantz of Steubenville outlined the word freedom on a freedom cross that volunteers are constructing out of 2-by-4-inch boards. Several parishioners from Holy Family Catholic Church have created 200 freedom crosses to protest a legal challenge to Steubenvilles unofficial logo that includes a cross and silhouette of the Franciscan University of Steubenville Christ the King chapel. The Freedom Crosses also are on sale at Nelsons Fine Art and Gifts store on Lincoln Avenue. - Dave Gossett

"The Holy Family Evangelization program and our other parish ministries banded together to develop the 'freedom cross' for Holy Family parishioners to place in their yards as a witness to our faith and our right to religious freedom," stated Jordan.

"The idea came from the photos from the Sept. 11 attack on the Twin Towers. I will always remember the photo of the damaged girders that had been twisted into a cross. The New York firefighters hung an American flag on the girders. That photo will always remain with me and it inspired our freedom cross design," said John Miller, a volunteer.

The idea caught fire among several parishioners who have helped create the wooden crosses with the word, "freedom" stenciled across the front and a small American flag placed at the top of the cross.

"We are cutting, assembling and painting approximately 200 crosses for our Holy Family parishioners. And we talked to Mark Nelson of the Nelson Fine Art and Gifts business and he has agreed to create a very similar design for sale to the general public," said Jordan.

"We started our first production run Friday, and the freedom crosses are available at our store on Lincoln Avenue for $10 each or on our freedomtothemax.com website. This is about promoting freedom of religion in our country. We have already had requests from several area citizens who want to express their support for our religious freedom," said Nelson.

Jordan said several officials from Franciscan University of Steubenville spoke to parishioners after a recent Sunday Mass.

View original post here:

Freedom cross campaign growing in Steubenville

Fraser Institute to Release Annual Economic Freedom of the World Report Tuesday, September 18

TORONTO, ONTARIO--(Marketwire - Sep 17, 2012) - The Fraser Institute will release the Economic Freedom of the World: 2012 Annual Report on Tuesday, September 18 at 6:30 a.m. (Eastern).

The peer-reviewed report ranks 144 countries around the world based on 42 distinct measures of policies that encourage economic freedom, the cornerstones of which are personal choice, voluntary exchange, freedom to compete, and security of private property.

"Research shows that people living in countries with high levels of economic freedom benefit from uninterrupted prosperity, greater political and civil liberties, and longer life expectancies," said Fred McMahon, Fraser Institute vice-president of international policy research.

"Sadly, citizens living in the bottom-ranked countries face a significantly lower quality of life since they lose the benefits that come from growth spurred on by economic freedom and suffer reduced prosperity."

A news release with additional information will be issued via Marketwire at 6:30 a.m. (Eastern) on Tuesday, September 18.

The full report will also be available as a free PDF download at http://www.fraserinstitute.org and http://www.freetheworld.com.

McMahon will be in Toronto and available for media interviews the day of the release.

Follow the Fraser Institute on Twitter

Like us on Facebook

The Fraser Institute is an independent Canadian public policy research and educational organization with offices in Vancouver, Calgary, Toronto, and Montreal and ties to a global network of 85 think-tanks. Its mission is to measure, study, and communicate the impact of competitive markets and government intervention on the welfare of individuals. To protect the Institute''s independence, it does not accept grants from governments or contracts for research. Visit http://www.fraserinstitute.org.

See the rest here:

Fraser Institute to Release Annual Economic Freedom of the World Report Tuesday, September 18

Will Hancock Co. beaches rebound from Isaac?

HANCOCK COUNTY, MS (WLOX) -

Hancock County beaches remain closed as the damage from Hurricane Isaac is assessed. It's an especially hard blow since the county was in the middle of a replenishment project to undo the damage from Hurricane Katrina seven years ago.

Right before Isaac, 300,000 cubic yards of fluffy white sand had been pumped in and crews were in the process of spreading it in areas where sand had been eroded away by previous storms.

"We were about 98-percent complete," said Hancock County District 1 Supervisor David Yarborough. "I was devastated. When you get to that point and then you've got to start over."

Engineers have spent the past couple of weeks trying to determine just how much of the new sand was lost during the storm.

"They're GPSing and have used instrumentation to shoot the elevations and compare it to the previous. Looks like to date we've found we've lost somewhere around 40,000 to 50,000 cubic yards of sand," said Hancock County Road Manager Bill Johnson. "Again, we're not finished. Rain has slowed us down."

From Bayou Caddy to Whispering Pines Street in Waveland, about 75 to 80 percent of the beach debris is cleaned up. And the thousands of dead nutria that littered the beach are gone, too.

"From Whispering Pines back to Washington Street, where we are located today, is more like in the 50 percent range," Johnson said.

Sections of the beach could be open by the end of September.

"Once the beach is clean, it will be usable more so than presentable, I guess you can say," explained Yarborough.

More here:

Will Hancock Co. beaches rebound from Isaac?

Request for Cootinator for Plaentary Astronomy Concepts With a Future 2.4-meter Telescope

NASA is exploring the use of a 2.4-m mirror system recently gifted to them by the National Reconnaissance Office; this system could be the nucleus of a new ultraviolet-optical (UVO) space telescope. Information is available at the website of a recent Princeton meeting:

http://www.princeton.edu/astro/news-events/public-events /new-telescope-meeting/

including a program with links to the presented talks. The first letter of intent to use this system focuses on astrophysics applications. NASA has indicated that broader usage (including planetary science) will be considered in a future announcement. Paul Scowen (Arizona State University) has offered to coordinate initial studies for non-astrophysics uses. He requests information about the requirements planetary scientists would have for a 2.4m UVO space telescope. The task would be to outline what performance specifications planetary astronomers would like/need in terms of imaging quality, resolution, throughput, wavelength bandpass, spectral resolution and coverage, field of view, and limiting surface brightness detection in, say, 1000 seconds. Someone is needed to coordinate responses from the planetary community and provide them to Paul, and responses are needed for the coordinator to coordinate. If you are interested being this coordinator, please contact Heidi Hammel (hbh@alum.mit.edu).

Please follow SpaceRef on Twitter and Like us on Facebook.

The rest is here:

Request for Cootinator for Plaentary Astronomy Concepts With a Future 2.4-meter Telescope

Libration libretto | Bad Astronomy

Sticking with my theme of art and astronomy

Back in March 2012, I posted a remarkable video from NASAs Goddard Space Flight Center (where I used to work) showing the motion of the Moon and how its appearance changes over the course of the year. The video went somewhat viral probably because of the awesome music I added from Kevin Macleod and I was pleased with it.

But then my friend, the skeptic and awesomely talented mezzo-soprano Hai-Ting Chin, asked me about libration, because she was working on a musical piece about it. Shes done several scientific songs with her partner Matthew Schickele, so its not as weird as it sounds. At least, not for them. Or me.

So we chatted back and forth a bit, and the result is this amazing piece of haunting and lovely music.

She sang this at the 2012 NECSS, and I wish I couldve been there to hear it. Wow. My sisters a mezzo-soprano, so I have some familiarity here: Hai-Tings voice is incredible. The piano is played by Erika Switzer.

I know the words to operatic music can be difficult to understand, so here are the lyrics:

This is animation. Each frame represents one hour; the whole, one year. The moon keeps the same face to us, but not exactly the same face. Because of the tilt and shape of its orbit we see the moon from slightly different angles. In a time lapse it looks like its wobbling. This is libration. That rocking and tilting is real, its called libration.

The moons orbit is not a circle, but an ellipse. The speed varies, but the spin is constant. Together these geometries let us look East a little more, then West a little more. And the orbits tilt lets us look South a little more, then North a little more. This is libration. The moons libration.

How flipping cool is this? Hai-Ting and Matt write the Scopes Monkey Choir blog, which you should have in your feed reader.

I love how science inspires art. Love. I hope to see more and more of this kind of scientific art as time goes on. The more ways we can show people how amazing and wonderful the Universe is, the better.

View post:

Libration libretto | Bad Astronomy

Smartphone ATMs Purchase And Exchange Old Devices

September 17, 2012

Lee Rannals for redOrbit.com Your Universe Online

Got a few of those old school Nokia 5120 phones lying around? Try depositing them inside an ecoATM kiosk and see if you cant get at least some parking meter change out of it.

A new artificial intelligence system is able to differentiate various consumer electronics products and determine a market value, then exchange some cash for the product.

Users will be able to walk up to the ecoATM kiosks and accept either cash or store credit for the value the machine gives them.

The ecoATM helps to find second homes for three-fourths of the phones it collects, sending the remaining ones to environmentally responsible recycling channels to reclaim any rare earth elements and keep toxic components from landfills.

The basic technologies of machine vision, artificial intelligence and robotics that we use have existed for many years, but none have been applied to the particular problem of consumer recycling, ecoATM co-founder and NSF principal investigator Mark Bowles said in a statement. But weve done much more than just apply existing technology to an old problemwe developed significant innovations for each of those basic elements to make the system commercially viable.

The ecoATM system began as a wood-box prototype that required a representative to ensure that users were being honest about their trades.

With funding from the NSF Small Business Innovation Research grant, researchers were able to develop artificial intelligence and diagnostics that delivered 97.5% accuracy for device recognition, allowing the ecoATMs to operate unsupervised.

Bowles said traditional machine vision relies on pattern matching, which is pairing a new image to a known one. This approach isnt useful for the ecoATMs evaluation process, which includes eight separate grades based on a devices level of damage.

Read the original:

Smartphone ATMs Purchase And Exchange Old Devices

B/E Aerospace Expansion

B/E Aerospace Expands

B/E Aerospace Expansion 6 PM

ROCKFORD (WIFR) -- The aerospace industry is getting stronger in the Stateline as a new manufacturing research facility celebrates their grand opening.

That flush you hear on airplanes may be possible thanks to B/E Aerospace. It's a Rockford company that produces waste and water systems. They just opened a 38,000 square foot research facility. B/E is one of more than 130 aerospace-related companies now in the Rockford area.

That's one of the other reasons we picked this area. It does have other aerospace companies in the area, which we can draw on talent from those various companies as well, said Mark Pondelick.

The expansion created 74 jobs. Members of the Rockford area aerospace network say the ongoing growth in the aerospace industry will be a great boost to Rockfords economy.

"I think aerospace is a great opportunity to look at onshoring, where the types of jobs we do here don't make themselves very available to offshore, low-wage type of work. It's a great thing to help build our economy, said Jeff Kaney.

The Rockford area aerospace network compares the expansion of the aerospace industry in Rockford to what Chrysler did in Belvidere. "I believe in five or ten years we're going to see a cementing. We're going to see more companies that are here growing, and I believe we will be attracting more and more suppliers to the area, General Manager Mark Pondelick says.

This expansion strengthens B/E's relationship with local companies they've been working with since opening in 2007.

All 74 positions at the facility have already been filled. But more jobs might be added as new projects are introduced. B/E Aerospace is the world's leading manufacturer of all aircraft cabin interior products, not just waste and water systems.

Link:

B/E Aerospace Expansion

Vector Aerospace Exhibiting at Africa Aerospace and Defence 2012

Toronto, ON Vector Aerospace Corporation, an industry leader in providing aviation maintenance, repair and overhaul (MRO) services for helicopter and fixed-wing aircraft will exhibit at Africa Aerospace and Defence 2012 (AAD 2012), taking place at the Waterkloof Air Force Base Centurion, City of Tshwane, South Africa from September 19-23, 2012 (Booth 6W4).

Vector Aerospace is excited to participate at AAD 2012, says Jeff Poirier, president of Vector Aerospace Engine Services Atlantic. Our comprehensive engine and component repair, overhaul and test services deliver exceptional value and benefit to our customers. We have the diverse capability to accommodate our customers specific requirements and the detailed product knowledge, experience and international service centre network to meet their needs. We look forward to meeting with operators at AAD 2012 to discuss how the Vector team can support their specific engine repair and overhaul requirements with superior quality and unparalleled customer satisfaction.

Vector Aerospace, with facilities located in Canada, the United States, the United Kingdom, South Africa, France and Australia, holds approvals from some of the world's leading OEMs including Pratt & Whitney Canada, Rolls-Royce, Turbomeca, General Electric and Honeywell. Products supported include the Pratt & Whitney Canada PT6T, PT6A, JT15D, PW100, PW307 and PW308A series engines; Rolls-Royce M250; Rolls-Royce T56/501D; Turbomeca Arriel 1 and Arriel 2; General Electric T58 / CT58 and CT-7A / T700 engines; Honeywell TFE731 and Honeywell ALF 502/LF507 (all engine lines include complete test capability); dynamic components, full-service avionics capability; up to and including glass cockpit engineering, development and integration, complete aircraft rewires, as well as airframes and major inspections support for a variety of Eurocopter, Sikorsky, Boeing and AgustaWestland helicopter models.

Visit Vector Aerospace at AAD 2012 (booth 6W4) to meet with our Sales, Customer Support and Operations team.

About Vector Aerospace Corporation (Vector)

Vector is a global independent provider of aviation maintenance, repair and overhaul services. Through facilities in Canada, the United States, the United Kingdom, France, Africa and Australia it provides services to commercial and military customers for various types of gas turbine engines, components and helicopter airframes.

Principal operations include Vector Aerospace Engine Services-Atlantic; Vector Aerospace Engine Services-UK; Vector Aerospace Helicopter Services-North America; SECA, A Vector Aerospace Company; Vector Aerospace International Limited and Pathix ASP. Vector also provides information technology solutions to an international customer base. Vector employs approximately 2,800 employees.

A comprehensive overview of Vectors capabilities can be viewed at http://www.vectoraerospace.com

The rest is here:

Vector Aerospace Exhibiting at Africa Aerospace and Defence 2012

UTC Aerospace Systems Showcases ISR Sensors at AFA

CHARLOTTE, N.C., Sept.17, 2012 /PRNewswire/ --UTC Aerospace Systems, a unit of United Technologies Corp. (UTX), introduces a full range of core capability advanced ISR (intelligence, surveillance and reconnaissance) sensors at the Air Forces Association (AFA) conference and technology exposition, which takes place at the Gaylord National Resort and Convention Center, Washington, D.C. on September 17-19.

Technical staff from UTC Aerospace Systems (booth 301) are available to discuss the Sentinel wide area motion imagery (WAMI) sensor system. Sentinel CA-247 represents the first operational, nighttime wide area capability, and has been deployed for two years. With more than a dozen systems produced to date and over 10,000 operational hours, Sentinel offers warfighters an unprecedented level of situation awareness: the right mix of day and nighttime coverage, high resolution over broad areas, and combat-proven performance at low risk and an affordable price.

Also on display is the SYERS-3 multi-spectral sensor, a truly adaptive sensor that offers the customer a feature-rich, high-quality image. SYERS-3 delivers the highest resolution multi-spectral intelligence providing detailed information day or night, even in challenging environments. Visitors to the show are invited to speak with technical staff to determine the best ISR solution for any application providing the desired imaging and greatest value for the operator.

UTC Aerospace Systems designs, manufactures and services integrated systems and components for the aerospace and defense industries. UTC Aerospace Systems supports a global customer base with significant worldwide manufacturing and customer service facilities.

United Technologies Corp., based in Hartford, Connecticut, is a diversified company providing high technology products and services to the building and aerospace industries.

http://www.utcaerospacesystems.com

Read more here:

UTC Aerospace Systems Showcases ISR Sensors at AFA

Research and Markets: Future Horizons in the US Microbiology Market: Supplier Shares and Sales Forecasts for 100 …

DUBLIN--(BUSINESS WIRE)--

Research and Markets (http://www.researchandmarkets.com/research/nngc8m/future_horizons) has announced the addition of the "Future Horizons in the US Microbiology Market: Supplier Shares and Sales Forecasts for 100 Infectious Disease Tests by Market Segment" report to their offering.

Highlights

- Comprehensive 1,037-page analysis of the US microbiology testing market.

- Major issues pertaining to the US microbiology laboratory practice, as well as key economic, regulatory, demographic, social and technological trends with significant market impact during the next ten years.

- Current scientific views on the definition, epidemiology, and etiology of major infectious diseases and microorganisms.

- Ten-year test volume and sales forecasts for nearly 80 microbiology tests performed in US hospitals, blood banks, physician offices, public health and commercial laboratories.

- Instrumentation technologies and feature comparison of leading analyzers.

- Sales and market shares of leading suppliers.

- Emerging diagnostic technologies and their potential market applications.

Visit link:
Research and Markets: Future Horizons in the US Microbiology Market: Supplier Shares and Sales Forecasts for 100 ...

ACLU challenges California DNA collection practice

SAN FRANCISCO An Alabama man was charged this month with the 1980 murder of an Oxnard teen. A Placerville man was arrested last month for a 1986 rape and murder of a San Mateo teen. A San Francisco man is currently on trial for the murder and robbery of a tourist two decades ago.

Technological advances in genetic research and computers in recent years have turned solving "cold cases" into near-routine police work. The California Attorney General reports that the state's DNA database of close to 2 million samples spits outs more than 425 "hits" a month, more than double the average monthly rate of 183 in 2008. More than 10,000 suspects have been identified in the last five years.

But on Wednesday, the American Civil Liberties Union will argue before a federal appellate court in San Francisco that California's DNA collection efforts have become unconstitutionally aggressive and that the spike in hits comes at the expense of civil liberties.

The ACLU is asking the 9th U.S. Circuit Court of Appeals to strike down California's Proposition 69, which authorized police to obtain a genetic sample from every person arrested on felony charges, not just those convicted. Some 25 other states have enacted similar laws since 62 percent of the California electorate passed the measure in 2004.

The issue of the warrantless swabbing of the cheek with a Q-tip of everyone arrested for a felony has sparked one of the hottest "search and seizure" debates in state and federal courts in decades.

The U.S. Supreme Court has already signaled its willingness to review Maryland's DNA collection law after a federal appeals court there ruled it unconstitutional in April. The California Supreme Court has agreed to review a lower court's overturning of the California law. Several other state and federal courts have already ruled or are weighing the issue throughout the country.

While the courts are sorting out the issue, California law enforcement officials are collecting more than 11,000 samples a month.

"Cold hit DNA is integral to bringing criminals to justice," said San Francisco District Attorney George Gascon, whose office is prosecuting William Payne for the 1983 strangulation murder of Nikolaus Crumbley. Crumbley's body was found in the city's McLaren Park along with DNA that was finally matched to Payne earlier this year. Payne denies killing Crumbley, saying his DNA was found at the scene because the two had had consensual sex. The match was made after Payne submitted a DNA sample after an unrelated assault conviction.

"Almost three decades later, we have charged the person responsible for this horrific murder," Gascon said.

The 9th Circuit itself has previously upheld the California law, which went into full effect in 2009. But underscoring the importance of the debate, a majority of the court's 24 judges voted to reconsider that divided ruling of three-judge panel. The matter now goes before a special "en banc" court of 11 judges.

Continued here:
ACLU challenges California DNA collection practice

Posted in DNA

Junk DNA, Junky PR

A week ago, a huge, painstakingly orchestrated PR campaign was timed to coincide with multiple publications of a long-term study by the ENCODE consortium in top-ranking journals. The ENCODE project (EP) is essentially the next stage after the Human Genome Project (HGP). The HGP sequenced all our DNA (actually a mixture of individual genomes); the EP is an attempt to define what all our DNA does by several circumstantial-evidence gathering and analysis techniques.

The EP results purportedly revolutionize our understanding of the genome by proving that DNA hitherto labeled junk is in fact functional and this knowledge will enable us to maintain individual wellbeing but also miraculously cure intractable diseases like cancer and diabetes.

Unlike the arsenic bacteria fiasco, the EP experiments were done carefully and thoroughly. The information unearthed and collated with this research is very useful, if only a foundation; as with the HGP, this cataloguing quest also contributed to development of techniques. What is way off are the claims, both proximal and distal.

A similar kind of theory of everything hype surrounded the HGP but in the case of the EP the hype has been ratcheted several fold, partly due to the increased capacity for rapid, saturating online dissemination. And science journalists who should know better (in Science, BBC, NY Times, The Guardian, Discover Magazine) made things worse by conflating junk, non-protein-coding and regulatory DNA.

Biologists particularly those of us involved in dissecting RNA regulation have known since the eighties that much of junk DNA has functions (to paraphrase Sydney Brenner, junk is not garbage). The EP results dont alter the current view of the genome, they just provide a basis for further investigation; their definition of functional is biochemically active two very different beasts; the functions (let alone any disease cures) will require exhaustive independent authentication of the EP batch results.

Additionally, the findings were embargoed for years to enable the PR blitz at minimum unseemly when public funds are involved. On the larger canvas, EP signals the increased siphoning of ever-scarcer funds into mega-projects that preempt imaginative, risky work. Last but not least, the PR phrasing choices put wind in the sails of creationists and intelligent design (ID) adherents, by implying that everything in the genome has a purpose under heaven.

What did the study actually do? The EP consortium labs systematically catalogued such things as DNAase I hypersensitive and methylated sites, transcription factor (TF) binding sites and transcribed regions in many cell types. Unmethylated nuclease-sensitive DNA is in the open configuration aka euchromatin, a state in which DNA can discharge its various roles. The TF sites mean little by themselves: to give you a sense of their predictive power, any synthetically made DNA stretch will contain several such sites. Whether they have a function depends on a whole slew of prerequisites. Ditto the transcripts, of which more anon.

Lets tackle junk DNA first, a term I find as ugly and misleading as the word slush for responses to open submission calls. Semantic baggage aside, the label junk was traditionally given to DNA segments with no apparent function. Back in the depths of time (well, circa 1970), all DNA that did not code for proteins or proximal regulatory elements (promoters and terminators) was tossed on the junk pile.

However, in the eighties the definition of functional DNA started shifting rapidly, though I suspect it will never reach the 80% used by the EP PR juggernaut. To show you how the definition has drifted, expanded, and had its meaning muddied as a term of art that is useful for everyone besides the workaday splicers et al who are abreast of trendy interpretations that may elude the laity, lets meander down the genome buffet table.

Protein-coding segments in the genome (called exons, which are interrupted by non-protein-coding segments called introns) account for about 2% of the total. That percentage increases a bit if non-protein-coding but clearly functional RNAs are factored in (structural RNAs: the U family, r- and tRNAs; regulatory miRNAs and their cousins).

Go here to read the rest:
Junk DNA, Junky PR

Posted in DNA

Calif. DNA Collection From Arrestees Challenged

An Alabama man was charged this month with the 1980 murder of an Oxnard teen. A Placerville man was arrested last month for a 1986 rape and murder of a San Mateo teen. A San Francisco man is currently on trial for the murder and robbery of a tourist two decades ago.

Technological advances in genetic research and computers in recent years have turned solving "cold cases" into near-routine police work. The California Attorney General reports that the state's DNA database of close to 2 million samples spits outs more than 425 "hits" a month, more than double the average monthly rate of 183 in 2008. More than 10,000 suspects have been identified in the last five years.

But on Wednesday, the American Civil Liberties Union will argue before a federal appellate court in San Francisco that California's DNA collection efforts have become unconstitutionally aggressive and that the spike in hits comes at the expense of civil liberties.

The ACLU is asking the 9th U.S. Circuit Court of Appeals to strike down California's Proposition 69, which authorized police to obtain a genetic sample from every person arrested on felony charges, not just those convicted. Some 25 other states have enacted similar laws since 62 percent of the California electorate passed the measure in 2004.

The issue of the warrantless swabbing of the cheek with a Q-tip of everyone arrested for a felony has sparked one of the hottest "search and seizure" debates in state and federal courts in decades.

The U.S. Supreme Court has already signaled its willingness to review Maryland's DNA collection law after a federal appeals court there ruled it unconstitutional in April. The California Supreme Court has agreed to review a lower court's overturning of the California law. Several other state and federal courts have already ruled or are weighing the issue throughout the country.

While the courts are sorting out the issue, California law enforcement officials are collecting more than 11,000 samples a month.

"Cold hit DNA is integral to bringing criminals to justice," said San Francisco District Attorney George Gascon, whose office is prosecuting William Payne for the 1983 strangulation murder of Nikolaus Crumbley. Crumbley's body was found in the city's McLaren Park along with DNA that was finally matched to Payne earlier this year. Payne denies killing Crumbley, saying his DNA was found at the scene because the two had had consensual sex. The match was made after Payne submitted a DNA sample after an unrelated assault conviction.

"Almost three decades later, we have charged the person responsible for this horrific murder," Gascon said.

The 9th Circuit itself has previously upheld the California law, which went into full effect in 2009. But underscoring the importance of the debate, a majority of the court's 24 judges voted to reconsider that divided ruling of three-judge panel. The matter now goes before a special "en banc" court of 11 judges.

Here is the original post:
Calif. DNA Collection From Arrestees Challenged

Posted in DNA

Applied DNA Sciences, Textile Centre of Excellence Unveil Textiles Anti-Counterfeiting Platform

STONY BROOK, NY--(Marketwire - Sep 17, 2012) - The Textile Center of Excellence at Huddersfield, United Kingdom (TCOE), and Applied DNA Sciences, Inc. ( OTCBB : APDN ) (Twitter: @APDN), a provider of DNA-based anti-counterfeiting technology and product authentication solutions, announced today the roll out of a new platform for protecting textile brands, under the SigNature DNA brand. The services, which the two organizations call "revolutionary," aim to protect textiles from a wave of counterfeiting which has struck the industry.

The platform includes applications which protect a wide range of textile, apparel and accessory products, including impregnation and authentication of DNA-marked:

The platform will be unveiled at the world-famous Premire Vision Pluriel, opening at Paris Nord Villepinte Parc d'Expositions (exhibition center) at Booth #5C18, from September 19-21, 2012. At the show, APDN and TCOE will feature demonstrations, samples, and technical experts, all showing the "unique, uncopyable, and uncompromising" abilities of the technology in protecting brands from counterfeiting.

In a joint statement, the two organizations said that their technology "offers our industry a unique and powerful means to mark and authenticate original items marked with DNA."

The two organizations described SigNature DNA as "a leading anti-counterfeiting technology that can be incorporated at any point in the textile supply chain as a means to link a genuine product to its original source of manufacture." Botanical SigNature DNA markers are authenticated in a laboratory and help to provide forensic evidence that can be used in a court of law.

The Textile Centre of Excellence has partnered with some of the most prestigious mills in the United Kingdom, including Bower Roebuck, Dormeuil, Holland and Sherry, Taylor and Lodge, and John Foster. Collectively, these fabric designers and weavers supply fabric to many of the most famous designer lines of Europe and America. Its botanical SigNature DNA-based technology protects historic and high-value Yorkshire Wool. APDN has separately partnered with Supima, a promotional organization of American growers of American Pima cotton.

Bill Macbeth, Managing Director of the Textile Centre of Excellence, commented: "SigNature DNA technology offers textile and clothing manufacturers a fool-proof and affordable solution to the growing menace of product counterfeiting. We are ready and willing to help brand owners and manufacturers to boost their brand values and revenues by incorporating this unique protection into their products."

Said Dr. James A Hayward, President and CEO, Applied DNA Sciences: "We believe that the Textile Centre's new platform is a powerful demonstration of the versatility and effectiveness of our SigNature DNA product. We urge visitors to Premiere Vision to visit the TCOE booth and see for themselves how DNA marking and authentication can add great value to their product lines."

About The Textile Centre of Excellence, and the Huddersfield and District Textile Training Company

The Huddersfield and District Textile Training Company was established in 1976 to unite the local textile industry in a shared approach to professional, equitable and high-quality training. In 1999 the company established the Textile Centre of Excellence, a 2 million development located in Leeds Road Huddersfield, providing a wide range of 'state of the art' textile and clothing research and development, training and production facilities including:

See the rest here:
Applied DNA Sciences, Textile Centre of Excellence Unveil Textiles Anti-Counterfeiting Platform

Posted in DNA

New gene could lead to better bug-resistant plants

ScienceDaily (Sep. 17, 2012) The discovery of a new gene could lead to better bug-resistant plants.

Research led by Michigan State University and appearing on the cover of this week's Proceedings of the National Academy of Sciences, demonstrates that domestic tomatoes could re-learn a thing or two from their wild cousins.

Long-term cultivation has led to tomato crops losing beneficial traits common to wild tomatoes. Anthony Schilmiller, MSU research assistant professor of biochemistry and molecular biology, was able to identify a gene that is involved in one of these beneficial traits.

Many tomato secrets are found in its hair. Trichomes, or hair-like protrusions, produce a mixture of specialized chemicals that shape the interactions between the plant and its environment. The location of the chemicals allows some of them to act as the first line of defense against pests.

One class of compounds, acyl sugars, is a frontline defender. Trichomes secrete acyl sugars to fend off pests. Schilmiller teamed with Robert Last, MSU professor of biochemistry and molecular biology, and Amanda Charbonneau, MSU doctoral researcher, to try to understand how these chemicals are made. Little was known about how acyl sugars were produced until now, and this research identifies and describes the first gene that participates in the production of the protective sugars in cultivated tomatoes, Schilmiller said.

"Acyl sugars play a critical role in allowing wild tomatoes to fend off bugs," he said. "Because cultivated tomatoes were not bred for their acyl sugar amounts and quality, they have reduced levels compared to wild ones we do not eat. Understanding how they are made is the first step toward breeding cultivated tomatoes, and other plants in this family, to make them more resistant to herbivores."

Other Solanaceous crops that could benefit from this research include potatoes, peppers, eggplants and petunias.

In addition, this work shows that the newly discovered gene is active only in one specific cell of one trichome type.

"Not only will we be able to potentially engineer heartier tomatoes, but understanding how to specifically target trichome gene expression without affecting the fruit, we'll also be able to add other important chemicals for insect resistance and possibly other beneficial traits to the surface of the plants," Schilmiller said.

The research was funded by the National Science Foundation.

Read the original post:
New gene could lead to better bug-resistant plants

Sandals wins big at World Travel Awards

Photo 1

Sandals Resorts International chief executive officer Adam Stewart (right) receives the World Travel Award (WTA) for Caribbean's Rising Star from Graham Cooke, founder and president of the WTA, as Anastagia Pierre, co-host of the WTA, shares in the moment.

Photo 2

Sandals Resorts International (SRI) CEO Adam Stewart (centre) poses alongside Sandals executives and Graham Cooke (fifth left), president of the World Travel Awards, following the awards ceremony which was hosted at Beaches Turks and Caicos Resort Villages and Spa last Friday.

SRI snagged 15 awards the most among nominees at the glitzy ceremony, billed the 'Oscars of the travel industry' which recognises the finest in the industry in the Caribbean and The Americas.

Sandals, which won the illustrious award as the Caribbean's Leading Hotel Brand, also took top honours as the Caribbean's Leading All-Suite Resort for Sandals Royal Plantation in Ocho Rios, Jamaica; the Caribbean's Leading Honeymoon Resort for Sandals Grande Antigua Resort and Spa; and the Caribbean's Leading Luxury All-Inclusive Resort for Sandals Emerald Bay, Great Exuma, Bahamas.

Fifty awards were handed out at the awards ceremony, which was hosted by former Miss Bahamas Universe Anastagia Pierre and soap opera actor Walt Willey of All My Children fame.

(Photos: Joseph Wellington)

See the article here:

Sandals wins big at World Travel Awards

Advanced Mission Computer For Super Hornet, Growler Successfully Tested

Sun, Sep 16, 2012

The U.S. Navy has successfully flight tested a new mission computer that will expand the performance of the F/A-18E/F Super Hornet and EA-18G Growler. The new Type 4 Advanced Mission Computer (AMC) increases computing power and accelerates image and mission processing functions. Those advances will support new systems being incorporated onto the aircraft, including a Distributed Targeting System, Infrared Search and Track, and a new high-definition touch-screen display.

"The Type 4 Advanced Mission Computer puts game-changing computing power directly into the hands of the warfighters who fly the Super Hornet and Growler," said Kevin Fogarty, director of Boeing F/A-18 and EA-18G Mission Systems. "Working collaboratively with the U.S. Navy and our industry partners, we are increasing combat capability with an affordable, evolutionary approach to technology advancements." The new AMC was tested on a Navy F/A-18F during a 90-minute flight at Naval Air Weapons Station China Lake, CA, verifying that it met critical safety and system requirements. Additional testing is planned. Boeing will deliver to the Navy the first Super Hornets and Growlers with the Type 4 AMC in 2014. General Dynamics Advanced Information Systems is Boeing's principal supplier for development of the AMC. The F/A-18E/F Super Hornet is a low observable, multirole aircraft that performs a multitude of missions, including air superiority, day/night strike with precision-guided weapons, fighter escort, and close air support. The EA-18G Growler is the only air combat platform that provides full airborne electronic attack capability along with the targeting and self-defense capabilities derived from the F/A-18E/F Block II Super Hornet.

(U.S. Navy image)

Original post:

Advanced Mission Computer For Super Hornet, Growler Successfully Tested