From the Vault: My Darwinian Daughters | The Loom

[An old post I'm fond of]

My wife and I have two lovely daughters: Charlotte is two and a half, and Veronica is seven weeks. And we are tired. We think of ourselves as being on the losing end of a tag-team wrestling match–particularly at about seven in the morning, after Veronica has gone through a few hours of pre-dawn nursing, squirming, groaning, crying, spewing, and nursing. Just when she has faded off into angelic sleep, Charlotte wakes up from a long restful night and wants to eat Cheerios, do some jumping jacks, and type on my laptop pretty much all at the same time. It’s like the Destroyer giving the Crusher the high-five as one goes out of the ring and the other comes in to deliver the final flying scissor kick.

I’ve looked for some enlightenment about this daily bruising from evolutionary biologists. For them, these golden years are all about energy and information. In order for a child to thrive–and, ultimately, to pass on its parents’ genes–it needs a lot of energy to grow. Getting enough milk in the first year or two of life makes a huge difference to a baby’s health. But a mother can’t just nurse her baby on some rigid schedule–four ounces at noon, and then four at midnight–because a baby’s hunger is influenced by everything from the weather to its mother’s own changing health. She needs a sign, and her baby is happy to give her one, in the form of a cry.

The parental brain is finely tuned to a baby’s cry; in the middle of the night it brings us stumbling over to see what’s the matter. We’re pretty normal as animals go in this respect—when a bird comes to its nest and hears the sound of hungry squawks, it automatically rushes off to catch more bugs. Cuckoo birds take advantage of their slavish dedication to these squawks. They lay an egg in the nest of another bird, such as a reed warbler, and when the new cuckoo hatches it kicks out the reed warbler chicks. Yet the reed warbler parents feed the cuckoo that killed their family. Why? Because the cuckoo can mimic the sound of a nest full of reed warblers.

In the 1970s, the biologist Robert Trivers had an unsettling realization: a mother’s own child is a bit like the parasitic cuckoo. She and her child only share half of their genes, which means that their evolutionary interests aren’t the same. A baby has the best shot at surviving to adulthood and having babies of its own if it gets as much food, protection, attention, and so on from its mother as possible. And anything that a baby can do to get all this may boost its odds of success. In the womb, for example, a fetus sends out signals that increase the flow of nutrients from its mother’s blood vessels.

But what’s good for the baby is not entirely good for the mother, evolutionarily speaking. The best strategy for a mother to pass on her genes may be to spread her energies out evenly to all her children. Bearing and raising children is hard work, particularly for humans, and if a mother works too hard fostering one child, she may have fewer resources for her next one. Her genes will have a better chance of getting passed down if she can keep the manipulations of any individual baby in check. Mothers, for example, seem to slow down the growth of their babies in the womb. As a result, the average baby is not born at the optimal weight for avoiding an early death. It’s a little on the light side. Only an evolutionary tug of war can explain that gap.

Once out of the womb, baby still struggles with mother. The baby still needs milk, warmth, and protection. Its mother, on the other hand, may have a different unconscious agenda. If she wants to have another child, she needs to switch her baby eventually from high-energy milk to low-energy food. (Nursing lowers the chances of getting pregnant.) The conflict gets even tougher if the baby is weak or the mother is struggling to survive herself. It may be better to cut her losses and hope the next baby has better luck.

A baby is not helpless, though. After all, it has a direct line into its mother’s head. Babies may manipulate their mothers into offering them more care with signals like crying. According to one theory, crying is a kind of “honest advertising” to convince a mother a baby’s worth the effort. Crying, after all, doesn’t come for free–it may actually double a baby’s metabolism. So by crying, a baby may be saying, I can afford to waste this energy because I’m such a strong kid. Crying-as-advertising might solve the mystery of colic—the inconsolable wails of some children who otherwise seem perfectly healthy. They may just be trying particularly hard to impress their parents. (Here’s a post about how the colors of autumn leaves may also be honest advertising, sent from trees to the insects that eat them.)

The tantrums and clinginess of older babies may just be new variations on this basic strategy. As mothers slowly try to wean their kids, the kids respond by getting in as much nursing and attention as they can. The more the child can nurse, the longer it will take for its mother to have another child.

Studies on our primate cousins back up these theories. It turns out that infant monkeys make about ten times more contacts with their mothers than vice versa, and that the mothers push away the babies as they get older. They even start ignoring their babies’ distress calls–because often these calls turn out to be false alarms. (My personal favorite is the observation that young monkeys and apes sometimes jump on adults during sex. One chimp that was adopted by a married couple apparently jumped on them as well.)

But there’s a flip side to this hypothesis: if it’s the product of evolution, it must be partly the result of genes. In the February issue of the journal Behavioral Ecology and Sociobiology, Dario Maestripieri of the University of Chicago reports his elegant study of the genes behind the mother-child struggle. At a colony of rhesus macaque monkeys, he found 10 babies who were all born within a day of each other. He shuffled them among their mothers, and the foster mothers raised the babies as if they were their own. Maestripieri then watched how they got along as the babies grew older and the mothers prepared to have another baby.

Not surprisingly, these foster families got into more conflicts as the mothers approached their next opportunity to mate. But Maestripieri also found that some babies became pushier than others, while some mothers brushed them off more than others. And when he compared the foster children with their biological mothers, he found a genetic link between them. The clingiest infants had biological mothers who tended to rebuff their foster children. In other words, the pushy-baby genes and the tough-mom genes were bundled up as a package. As mothers become tougher, the genes that favor pushy babies get favored. Maestripieri has taken a snapshot of a struggle between parents and children that has lasted for millions of years.

All of this doesn’t help me feel more awake this morning, but at least it helps to remind me that Charlotte and Veronica aren’t in this tag-team match out of personal spite. It’s just evolution, Dad.


The Plot Thickens: Missing Iranian Nuclear Scientist Turns Up in D.C. | 80beats

AmiriShahram Amiri is at the Pakistani embassy in Washington D.C. Unless he’s not.

The missing Iranian nuclear scientist is no stranger to intrigue and indecision: Last month we covered dueling YouTube videos in which two men, both claiming to be Amiri, say that either he was being held against his will in the United States or was studying freely and happily here. Today his case took more strange turns, as government officials in Pakistan claimed that Amiri is currently at their embassy in Washington, awaiting a return trip to Iran.

Today Amiri was quoted by Iranian official media as claiming that the US government had intended to return him to Iran to cover up his kidnapping in Saudi Arabia. “Following the release of my interview in the internet which brought disgrace to the US government for this abduction, they wanted to send me back quietly to Iran by another country’s airline,” he told state radio from the Iranian interests office in Washington. “Doing so, they wanted to deny the main story and cover up this abduction. However, they finally failed” [The Guardian].

The U.S. State Department confirmed that Amiri is at the Pakistani embassy, but the government has maintained that he was in the United States on his own volition, and said today that he’s returning home of his own free will as well. According to an AP account, State Department spokesman P.J. Crowley used the opportunity to take a political jab at Iran over the American hikers still held in Iran.

However, while both Pakistan and the U.S. agree at least that Amiri is in D.C., the Pakistani embassy in D.C. didn’t get the memo. Wired.com reports that workers there were denying today that Amiri is in the building.

That’s from an individual at the press office who didn’t identify herself and said she could not speak for the record. She added she couldn’t explain why a spokesman for the Pakistani Foreign Ministry in Islamabad told reporters that the scientist is at the embassy’s Iranian interest section, about two miles away from the main facility in D.C.’s Glover Park neighborhood. But she also didn’t split hairs: “He’s not in the embassy at all” [Wired.com].

Because of the icy relationship between Iran and the United States, the two nations don’t have direct diplomatic ties. Pakistan handles Iranian interests in Washington, while Switzerland handles American diplomacy in Tehran.

Whichever nation is telling the truth (or the most reasonable estimation thereof), it’s not hard to see why the United States would be interested in Amiri, or why Iran would want to argue that he was a kidnapping victim rather than a defector. It is widely assumed that Amiri could provide information about Iran’s nuclear program.

Born in the Western Iranian city of Kermanshah in 1977, Amiri worked as a radio isotope researcher at Malek Ashtar Industrial University, which is affiliated with the Revolutionary Guard, an elite military branch, as well as for Iran’s Atomic Energy Organization. He was on a religious pilgrimage to Saudi Arabia in the spring of 2009 when he vanished [Los Angeles Times].

Related Content:
80beats: Dueling Videos: Is Iranian Nuclear Scientist a Defector or Kidnap Victim?
80beats: Iran Blocks Gmail; Will Offer Surveillance-Friendly National Email Instead
80beats: The Tweets Heard Round the World: Twitter Spreads Word of Iranian Protests
Discoblog: Update: Iran’s Numbers Even Fishier Than Previously Reported


Amazonian Mega-Storm Knocked Down Half a Billion Trees | 80beats

fallen-treeNorth Americans may remember 2005 as the year of Hurricane Katrina, but below the equator another fearsome tempest wrought its own devastation that year. From January 16th to 18th a line of thunderstorms tore through the Amazon basin, and researchers who conducted a botanical “body count” after the storm estimate that it laid low between 441 and 663 million trees.

Over the course of two days, a squall line measuring 620 miles (1,000 km) long and 124 miles (200 km) wide raged across the region from southwest to northeast, with buzzsaw-like winds of 90 mph (146 km/hr) causing widespread damage to property and a handful of deaths [Time].

Jeffrey Chambers, a forest ecologist at Tulane University, wanted to assess the damage caused throughout the massive Amazon basin, so he turned to satellites.

Using satellite images of about 34,000 square kilometers of the region from 2004 and comparing them with post-storm images, the researchers discovered that the wind had cut an enormous swath through the rainforest, running in a northeasterly direction across the Amazon basin. In all, the storm affected possibly 70% of the basin. [ScienceNOW]

Previously, other researchers had suggested that drought was responsible for a massive tree die-off in 2005, but Chambers says the satellite data and investigations of five field sites disproved the drought theory. In the hardest hit areas, the researchers found up to 80 percent of the trees snapped in half or blown over from their roots. Says Chambers:

“If a tree dies from drought, it generally dies standing…. It looks very different from trees that die snapped by a storm.” [Discovery News]

The paper and its full details will appear in the journal Geophysical Research Letters. Environmentalists note that the huge blow-down didn’t do the planet any favors, since the Amazon acts as a carbon sink–its living trees suck up and store planet-warming carbon dioxide. But as fallen trees rot, they release their stored carbon dioxide back into the atmosphere. What’s more, some climate change forecasts predict that there will be more severe storms in a warmer world, so it’s possible that the Amazon will be battered by more mega-storms in the future.

Related Content:
80beats: Amazonians Turned Poor Land Into Great Farms—and Healthy Ecosystems
80beats: Massive Hydroelectric Dam in the Amazon Will Go Ahead
80beats: Next Year’s Nike: Amazon-Friendly Air Jordans
80beats: Researchers Find the Lost “Garden Cities” of the Ancient Amazon
DISCOVER: Clear-Cutting Has a High Cost

Image: Jeffrey Chambers/Tulane University


Are Colleges Worth the Price of Admission? | The Intersection

The talented professors/writers Claudia Dreifus and Andrew Hacker have a new book coming out in August called Higher Education? How Colleges Are Wasting Our Money and Failing Our Kids—and What We Can Do About It. It's a topic CM and I frequently explore here so I'm very much looking forward to this one. Yesterday's Chronicle of Higher Eduction included an interesting article adapted from their book entitled, Are Colleges Worth the Price of Admission? Good question. Hacker and Dreifus begin: Tuition charges at both public and private colleges have more than doubled—in real dollars—compared with a generation ago. For most Americans, educating their offspring will be the largest financial outlay, after their home mortgage, they'll ever make. And if parents can't or won't pay, young people often find themselves burdened with staggering loans. Graduating with six figures' worth of debt is becoming increasingly common. So are colleges giving good value for those investments? What are families buying? What are individuals—and our society as a whole—gaining from higher education?
So after years of interviews with policymakers, students, and university leaders... Their conclusion?
Colleges are taking on too many roles and doing none of them well. They are staffed by casts ...


Want to Monitor the Earth’s Magnetic Field? There’s an App for That. | Discoblog

solarisSure, your GPS-enabled cellphone might tell you which way is north, but why settle for a mere compass when you can monitor the Earth’s entire magnetic field?

According to its developer, Tomasso, a Droid app called Solaris weaves together data from several satellites that monitor the Sun’s activity and its effects on our planet’s magnetic field.

NASA satellite team STEREO (Solar TErrestrial RElations Observatory) provides information on “Earth-directed solar ejections.” NASA’s SDO (Solar Dynamics Observatory) also gives stats on what the Sun is sending our way in the forms of solar wind and energetic particles. Finally, the NOAA’s polar orbiter satellites provide information on the Earth’s weather.

Combining this information, the app allegedly can show (almost) real-time changes in the Earth’s magnetic field from solar activity and even indicate when trapped, Sun-spewed subatomic particles are making a spectacular show, in the form of the northern or southern lights.

The app can also tell you when to look up since, as reported by Gizmodo, the “Phone vibrates when geomagnetic storm level rises or aurora may be overhead at your location.”

Related content:
Discoblog: NASA iPhone App Lets You Drive a Lunar Rover (Just Try Not to Get Stuck)
Discoblog: Need to Find the Big Dipper? There’s an App for That
Discoblog: iCop: Police to Use Facial Recognition App to Nab Criminals
Discoblog: Augmented Reality Phone App Can Identify Strangers on the Street
Discoblog: iPhone Translator App Speaks for You, Using Your Mouth

Image: Solaris / Tomasso via AndriodPIT


Could an Oversized Noggin Help Stave Off the Effects of Alzheimer’s? | 80beats

bigheadFinally, a big head comes in handy.

For a study out this week in Neurology, scientists looked at 270 Alzheimer’s patients from the Multi-Institutional Research in Alzheimer’s Genetic Epidemiology study (MIRAGE) and found that a larger head size was correlated with better-preserved cognitive and memory skills. The team, led by Robert Perneczky, argues that a bigger cranial circumference could mean a person has more “brain reserve,” offering some protection against the deterioration brought on by Alzheimer’s.

Finding this out took a lot more than just scanning the patients for cerebral atrophy and then wrapping a tape measure around their heads to gauge circumference:

They took blood to see which variant of the APOE gene was in their DNA (having one or two copies of the e4 version of APOE is thought to increase one’s risk of Alzheimer’s). They looked up the results of each patient’s most recent mini-mental state examination (MMSE) to measure cognitive function. They also took into account each patient’s age and ethnicity, how long they’d had Alzheimer’s and whether they had diabetes, hypertension or major depression [Los Angeles Times].

When the scientists controlled for the other factors and simply compared head size to cognitive function, they found that patients with the larger heads scored higher on the MMSE cognitive test.

Unfortunately for most of us, the brain reaches nearly its full size—93 percent of it—by the time we’re 6. So if the researchers are right about brain size and its effect against the ravages of Alzheimer’s, then the best time to start protecting a person’s mental health late in life is early in life.

Dr Simon Ridley, head of research for the Alzheimer’s Research Trust, said: “Alzheimer’s is a very complex disease, so we should be careful not to focus too much on a single risk factor, particularly as there is little we can do about the size of our heads. The researchers have also posed the idea that nutrition, injury or infection in early life can have an impact on brain reserve, suggesting that we should look after our brain from day one” [BBC News].

Related Content:
80beats: Lack of ZZZZs Linked to Alzheimer’s in Mice
80beats: Big Neurons & Way With Words May Help Prevent Alzheimer’s
80beats: A Toke a Day Might Keep Alzheimer’s Away
80beats: New Theory of Alzheimer’s: Brain’s Memory Center Is “Overworked”

Image: flickr / Délirante bestiole


Rosetta sends back gorgeous asteroid closeups | Bad Astronomy

The European space probe Rosetta passed about 3000 km from the asteroid Lutetia on Saturday, July 10, 2010, and it sent back incredible closeup images of the rock. Check ’em out below!

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<p>This series of pictures was taken as Rosetta approached Lutetia.</p><p>The first image in the upper left was taken about 9.5 hours before closest approach, when Rosetta was still 510,000 km (315,000 miles) from the asteroid - more distant than the Moon is from the Earth!</p><p>The last image (lower right) was obtained an hour and a half before the close encounter when the probe was still 81,000 km (50,000 miles) from Lutetia.</p><p>In the first image, details only about 20 km (12 miles) across can be seen, but that improves by almost a factor of 10 in the last image!</p><p><span><em>Credit: ESA 2010 MPS for OSIRIS Team. MPS/UPD/LAM/IAA/RSSD/INTA/UPM/DASP/IDA</em></span></p><span>This is the final sequence of images taken right at closest approach. The bottom right image was taken just at the moment that Rosetta passed Lutetia.<em><br /><br /><br />Credit: ESA 2010 MPS for OSIRIS Team. MPS/UPD/LAM/IAA/RSSD/INTA/UPM/DASP/IDA</em></span>For the first time ever, a spacecraft approached closely enough to the asteroid Lutetia to see its surface clearly. Craters dot the surface, as well as grooves. Note the elongated crater near the bottom (left of center); was that from a nearly horizontal impact? It's curious that it points almost directly to the crater to the left. That may just be coincidence; the surface is so cratered that some are bound to be in patterns just randomly.<br /><span><em><br />Credit: ESA 2010 MPS for OSIRIS Team. MPS/UPD/LAM/IAA/RSSD/INTA/UPM/DASP/IDA</em></span>Another closeup of Lutetia's surface provided by Rosetta. In this shot, you can again see a variety of craters peppering the asteroid, as well as some grooves that follow the landscape. Those curves give a relative age for the grooves: they must have formed <em>after</em> the impact crater on the right, which distorted the landscape. Also, had they formed before, the impact would have eradicated them. Images like this can give scientists a vast amount of insight into the history of the asteroid.<br /><span><em><br />Credit: ESA 2010 MPS for OSIRIS Team. MPS/UPD/LAM/IAA/RSSD/INTA/UPM/DASP/IDA</em></span><span>After Rosetta passed Lutetia, its cameras were pointed back to the rock, and therefore back toward the inner solar system. That geometry gives us an amazing, brooding, and lovely view we never get from Earth: a crescent asteroid.<em> <br /><br />Credit: ESA 2010 MPS for OSIRIS Team. MPS/UPD/LAM/IAA/RSSD/INTA/UPM/DASP/IDA</em></span><span>When Rosetta was still 36,000 km (22,000 miles) from Lutetia, it snapped this jaw-dropping shot of the asteroid with Saturn in the distant background. This means the spacecraft, the asteroid, and Saturn were almost exactly along the same line, a configuration that probably only lasted for a few seconds. It's remarkable that controllers on the ground were able to take this picture at just the right moment to obtain this amazing picture!<br /><em><br /><br />Credit: ESA 2010 MPS for OSIRIS Team. MPS/UPD/LAM/IAA/RSSD/INTA/UPM/DASP/IDA</em></span>

Emily Lakdawalla at the Planetary Society Blog has more details, as always.


Related posts:

- Rosetta takes some home pictures
- Rosetta swings past home one final time
- Rosetta swings by Mars


The Super-Hot Atlantic | The Intersection

And no, I don't mean sexy. This is a NASA image from the start of hurricane season, showing the sea surface temperatures in the tropical Atlantic and especially in the main hurricane development region. I got the image from this great analysis over at the WWF Climate Blog, which is mainly devoted to summarizing a recent congressional briefing on why we very likely have a really bad hurricane year to look forward to. Some observations that emerged from that meeting:
* We've never had a pre-season forecast of 23 storms before. Let's hope that is an overshot, rather than an undershot.
* The Atlantic is even hotter than it was before the devastating 2005 hurricane season.
* Oh yeah, and there's oil out there. (The title of the briefing was "Hurricanes and Oil Will Mix: Managing Risk Now.") How much of the Atlantic's current, alarming temperature has to do with global warming? Well, listen to Greg Holland of the National Center for Atmospheric Research:
When asked about the degree to which rising greenhouse gas (GHG) concentrations in the atmosphere were contributing to the trend of rising sea surface temperatures in the tropical Atlantic Ocean, Holland said the temperatures could not be explained without accounting for rising GHG concentrations. He said that ...


The Tattoo That Wasn’t There | The Loom

gestalt440Matt writes, “I took an alternate path to understanding the world from most of your readers. I switched from psychology to history in order to better research what really happened as opposed to what kids are taught in school. A concept that stuck with me and in fact is a critical reference point for me in every day life is our tendency to seek patterns and to see things that aren’t there. As a tribute to the fallibility of our complex brains my first tattoo is a visualization of the Gestalt Law of Closure.”

Click here to go to the full Science Tattoo Emporium.


Guess This!

UPDATE:  SOLVED at 12:11 CDT by Dwight

Cheers, all.  Hope you’ve had a good week since I last puzzled you.  I’ll try to do it again.  I know; I have an evil streak.

Today’s object (yes, you’ll be looking for an object) is so familiar to everyone, you can guess it even if you haven’t been a blog reader and this is your first riddle attempt.  That’s the trip-up for the people who are used to the riddles; so don’t over-look the obvious.  Ready?  Okay…

NASA/ESA Hubble image of IRAS 05437+2502... No, it's not the answer, it's a clue.

This object is thought of as one thing… and it is one thing… mostly.

It used to be much smaller than it is now.

It’s not finished.

There are two little surprises at the center of this wonder.

One of the surprises is responsible.

This absolutely horrified our ancestors…

… and then it was forgotten.

When it was rediscovered, it was something different.

Now it carries the designation of “number one”.

It makes an appearance in modern literature and games.

This used to be visible to the unaided eye, but no longer.

In the northern hemisphere, you must search the winter sky to find this.

That should do it.  I’ve given you a lot of clues today, but watch out.  Sometimes a lot of information isn’t quite as helpful as it looks.  Still, this is a fun little brain-buster, and should only be up a few minutes, so get your guess in!

(when two phobias collide)

“Keep a Distance From the Media” | The Intersection

Andy Revkin has the scoop on a letter from the IPCC (very misguided, to my mind) advising its scientists against having media contacts. An IPCC scientist, Edward R. Carr, also thinks this is a very bad idea. More specifically, IPCC chair Rajendra Pachauri wrote this to researchers:
I would also like to emphasize that enhanced media interest in the work of the IPCC would probably subject you to queries about your work and the IPCC. My sincere advice would be that you keep a distance from the media and should any questions be asked about the Working Group with which you are associated, please direct such media questions to the Co-chairs of your Working Group and for any questions regarding the IPCC to the secretariat of the IPCC. What Pachauri's letter should have said is the following:
I would also like to emphasize that enhanced media interest in the work of the IPCC would probably subject you to queries about your work and the IPCC. For this reason, the IPCC has developed a number of tip sheets, trainings, and other content to help scientists who may receive queries from the media. We also have several trained media consultants available at any time to answer your questions about the ...


Dispute over longevity research getting more coverage | Gene Expression

Earlier this week I pointed to the controversy which has erupted around the widely reported new paper, Genetic Signatures of Exceptional Longevity in Humans. Newsweek did the most thorough early reporting, but now The New York Times has published a follow up story covering the scientific criticisms to the original paper’s methodology. There’s nothing new in The Times‘ piece as such, but it shows that concerted scientific objection to the reception or interpretation of a particular finding which is widely disseminated in the media can yield results. Too often the mainstream media ends up serving as a glorified press release service, but in this case scientists are making their voices heard, and the media narrative is adjusting to the underlying discussion in the scientific community.

I’ve been told there may be more coming out which may shed light on this controversy next week. Stay tuned…

Video Illusions | Bad Astronomy

I love optical illusions, and I’m fascinated by the mechanics of vision, so I have to share with you this video. This technique of animation has been known for a long time, but it’s still pretty cool.

Another video discusses how this is done. I had a card I carried in my wallet for years that did a similar type of illusion using a lenticular overlay which, when you moved the card back and forth, made it look like little colored spirals were rotating in different directions. I bought it when I was in college, but sadly I lost it last year (I’m pretty sure I dropped it at Comic Con). I have no idea how to replace it. If any of you has seen something like it, please let me know!

Tip o’ the Fresnel lens to BABLoggee Cristiana Senni.


Singularity Summit 2010 | Gene Expression

The Singularity Summit is going to happen in about a month in San Francisco (August 14th-15th). Registration here. Yes, Ray Kurzweil will be there, but also Irene Pepperberg, James Randi and John Tooby. If you want to meet the ladies, probably not your scene (perhaps more accurately the lady, or two). But if you want to high five Robin Hanson at an after hours meet-up, get ready to party!

Here are my reflections from last year.

Hiroshima | Cosmic Variance

Last week I found myself on a tram in Hiroshima, heading to the stop “A-bomb dome”. I was surrounded by Japanese passengers, and for the first time in Japan I felt self-conscious and uncomfortable. I am an American working at Los Alamos, the literal and figurative birthplace of the atomic bomb. Memories of my visit to Trinity Site are still fresh. The weight of history is unavoidable. As in a classic Bruegel painting, however, nobody seems to pay particular notice. Everyone moves forward with their lives. A few days after the bomb, they restored streetcar service to parts of the city. There is no evidence of that terrible instant. None, that is, until you get off the tram stop and confront the dome. You’ve seen images of it countless times. But standing in front of it, surrounded by the bustling city of Hiroshima, is an altogether different experience.

hiroshimaThere is a museum near the dome, with the impossible task of presenting the bomb to the residents of Hiroshima, the inhabitants of Japan, and the rest of the world. The museum is split into two parts. The first focuses on the history of Hiroshima, and the build-up to war. It dwells on the extended decision-making process through which Hiroshima was selected as the first target. The city had strategic significance. The city hadn’t been (conventionally) bombed, which meant that the full effect of the new device could be estimated. It didn’t have significance for the post-war reconstruction plans (in the way that Kyoto did [and the US Secretary of War apparently honeymooned in Kyoto, and had a sentimental attachment]). It didn’t contain American prisoners-of-war. Hiroshima ended up at the top of the list. One thing I found surprising: the museum implies that the timetable for the bombings was heavily influenced by the Russians. The US wanted to pre-empt Russian participation in the Pacific, and were hoping to elicit a Japanese surrender before the Russians could formally enter the war. The other half of the museum focuses on the immediate aftermath of the bomb. It contains artifacts from the day, including stopped watches and bits of clothing and hair. And countless stories, almost entirely of children returning home to their parents in horrific condition, and dying in the subsequent hours or days. There is a focus, both in the museum and in the memorial peace park which surrounds it, on the youngest casualties.

Sixty-five years ago the first atomic bombs were used in war. There is something depressing that humanity finds it necessary to develop such terrible weapons. But perhaps there is something hopeful in that, in the ensuing half century, we’ve had enough sense not to use them again.


The secret history of X and Z – how sex chromosomes from humans and chickens found common ground | Not Exactly Rocket Science

XY

In humans, two chromosomes – X and Y – determine whether we are male or female. Of the two, Y tends to get more attention because of its small, degenerate size. Both X and Y probably evolved from a pair of ordinary chromosomes that have nothing to do with sex (also known as autosomes). The story goes that one of these autosomes developed a gene that immediately caused its bearer to become male, and eventually became the Y chromosome of today. The other one became X.

Throughout its history, Y has been a hotbed of genetic change, gaining, losing and remodelling its genes at breakneck pace, and shrinking by 97%. Its partner – X – has allegedly had a less eventful past, and should faithfully represent the ancestral autosome. This history of X and Y was first proposed in 1914 by Herman Muller, and ever since, his assumptions about X’s stability have gone untested. Now, it seems that Muller was wrong. Daniel Bellott from the Howard Hughes Medical Institute had uncovered the secret history of X, which turns out to be no less storied than Y’s tale.

Bellott’s work began, surprisingly, with chickens. Birds also have sex-setting chromosomes, known as Z and W, which vary between the males and females. The big difference is that in birds, males are ZZ and females are ZW – obviously in humans, males are the ones with the differing pair. Like the Y chromosome, W has shrunk and changed considerably while, as Bellott says, “the sex chromosomes that are present in both sexes (X and Z) were supposed to be above the fray”.

But Bellott showed that this isn’t true by completely sequencing the Z chromosome for the first time. (The chicken genome has been published before but sex chromosomes are notoriously difficult to sequence). His draft revealed that both X and Z arose from different autosome ancestors, and none of the 1,000 genes on the Z chromosome has a counterpart on the X. Nonetheless, they have independently evolved very similar features.

Both are very loosely packed with genes. In any given stretch of DNA, the Z and X chromosomes have half as many genes as other autosomes do. And among these patchily distributed genes are piles of litter – long stretches of repetitive DNA with no clear function. Most of these are sequences known as LINEs. “These LINEs are basically selfish elements,” says Bellott. “If a cell is like a computer, the genome is like a hard drive, and the LINEs are computer viruses that copy themselves over and over, filling up the drive.” Z has 70% more LINEs than any other chicken autosome.

The LINEs can’t quite account for all the extra space between the genes, but that might just be because they’ve decayed over time. Bellott explains, “We think that, for whatever reason, the mechanisms for cleaning out this “junk DNA” are less effective on Z and X chromosomes than on autosomes. As a result, junk builds up in between the genes on the Z and X, but because it doesn’t really do anything for the organism, it slowly decays. After a while, we can’t even recognize the “junk” as LINEs anymore. After millions of years as sex chromosomes, it just looks like the X and the Z have a low gene density.”

Why the similarities? It’s possible that both X and Z evolved from autosomes with features that made them more likely to become sex chromosomes. Perhaps, for example, their genes were already sparsely distributed. But Bellott ruled out this idea. He compared X to its closest counterpart in chicken, and Z to its equivalents in humans – none of these relatives had any structural features that made them stand out among other autosomes. There’s nothing that singles them out as ideal candidates for the role of sex chromosome.

So it seems that X and Z chromosomes are true examples of convergent evolution – when two entities take different evolutionary roads to arrive at the same adaptive destinations. Not only have their genes become more widely spread apart, they have also gained extra ones. While the tiny Y and W chromosomes have jettisoned genes at great speed, X and Z seem to have gained genes since their ancient days as autosomes.

The identity of these added genes is particularly surprising – they’re mostly male-specific genes that are only switched on in the testes. And there are lots of them, arrayed in a huge block. These testes-genes make up around a sixty of the Z chromosome and 1% of the chicken’s entire genome!

Z_chromosome

This is particularly surprising because the Z chromosome is present twice in male birds, but the X chromosome is only present once in male humans. You might have expected, for example, the X chromosome to be richer in female-specific genes. Bellott says, “The convergent specialization for testis function suggests that there are strong evolutionary pressures on male reproduction.” Indeed, other studies have suggested that traits related to male reproduction are some of the fastest evolving characteristics in the animal kingdom. These pressures are strong enough to trump any difference in the XY and ZW sex-setting systems.

Reference: Nature http://dx.doi.org/10.1038/nature09172

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The Forecasted Collapse of a Fishery | The Intersection

It could be the dams, fertilizers, pesticides, and related reduced food availability. It might have to do with the amount of water in the region, climate change, and poor regulation. Most likely, it's some combination of these factors compounded by widespread apathy about a population of chinook salmon off the coasts of Northern California--until it was too late. The Press Democrat quoted fisherman Al Vail: “I never caught a fish,” he said. “I've never seen a year like this, and I've been fishing for 45 years.” Sad, but is anyone surprised? Those with an eye to the fishery knew this news would come. The farmers, the environmentalists, the scientists, the fishermen, and much of the public observed and waited. Tragedy of the commons? Perhaps. Tragedy for the fishery and those involved in industry? Obviously. Next up... Blue Fin Tuna?
I'm reminded of Kurt on the fate of the planet in Man Without A Country: "We could have saved it, but we were too damn cheap and lazy."


Is This a Sample from Iwotaka?

Magnified view of microscopic particle, about 0.01 mm in size, from inside the sample return canister with quartz manipulator used by research team who hope it is first ever material returned from an asteroid. Note shadow of manipulating needle above. .Credit: JAXA

A little while ago we heard about the Hayabusa spacecraft making its way back to Earth after visiting the asteroid Iwotaka.

Part of the mission was to land on the asteroid and collect a sample from the asteroid and return it.  Sadly the sampling mechanism failed to work properly, not firing a projectile into the surface so the dust kicked up could be collected inside a canister.  Could the force of the landing craft kick up enough dust to be sampled?  The scientists and engineers at JAXA were hopeful.

Turns out the canister did indeed contain a few very small particles.  Now the question becomes: are they particles from the asteroid or contamination?  Time will tell.  If these are from Iwotaka they will be the first particles ever returned from an asteroid.  The samples are very small but apparently not so small they are useless and they will be extensively tested.

Hayabusa was the first spacecraft to land and take off from an asteroid.  Hayabusa suffered from some failures of its ion engines and really is a tribute to JAXA and their resolve to get the craft back, even if it did take three years longer.  JAXA is one of those space agencies that will emerge in the forefront of space sciences with what looks like more and more like the imminent demise of NASA.  Oh and don’t count China out, although they might not be as apt to share information believe you me they are up and coming.

It will be interesting to see how the private space industry in the US will stack up with other space launch entities, after all, commercial launches have been doing commercial space launches for quite a few years and are really the leaders in such endeavors at this point.  I kind of expect great things from the US industry, but that still remains to be seen.

Check out the JAXA site for more about what they are doing.