Creative Edge Nutrition, Inc., Acquires SCD Enterprises, LLC

MADISON HEIGHTS, Mich., Aug. 20, 2012 /PRNewswire/ -- Creative Edge Nutrition, Inc. (FITX), a nutritional supplement company focusing on active lifestyles, is announcing today that they have acquired SCD Enterprises, LLC. We will continue to aggressively grow and expand our presence in the sports nutrition marketplace through both organic growth and strategic acquisitions, as we move forward all details will be released.

In reference to this latest acquisition Bill Chaaban, Creative Edge Nutrition's CEO and President, stated: "We are glad to be able to announce this strategic development. The opportunity that this deal has provided to all parties is noteworthy."

About Creative Edge Nutrition, Inc.

Creative Edge Nutrition is a holding company and a Nutritional Supplement Company focused on developing innovative, high quality supplements. The company offers a broad spectrum of capsules, tablets, and powders, as well as science based products in the principal categories of weight management, nutrition challenges, energy and fitness. The Company manufactures under strict GMP guidelines at GMP Certified and/or FDA registered facilities. http://www.CenergyNutrition.com and http://www.facebook.com/pages/Creative-Edge-Nutrition-Inc/115224738609211

Safe Harbor Notice

This press release may contain "forward-looking statements" within the meaning of the Private Securities Litigation Reform Act of 1995, such as statements relating to financial results and plans for future development activities, and are thus prospective. Forward-looking statements include all statements that are not statements of historical fact regarding intent, belief or current expectations of the Company, its directors or its officers. Investors are cautioned that any such forward-looking statements are not guarantees of future performance and involve risks and uncertainties, many of which are beyond the Company's ability to control. Actual results may differ materially from those projected in the forward-looking statements. Among the factors that could cause actual results to differ materially from those indicated in the forward-looking statements are risks and uncertainties associated with the Company's business and finances in general, including the ability to continue and manage its growth, competition, global economic conditions and other factors discussed in detail in the Company's periodic filings with the Security and Exchange Commission. The Company undertakes no obligation to update any forward-looking statements.

Contact: Paul Thomas (313) 655-1669 Email: Info@cenergynutrition.com

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Creative Edge Nutrition, Inc., Acquires SCD Enterprises, LLC

Harvard scientists encode an entire book onto DNA

Summary: A team of Harvard researchers have managed to encode a book onto DNA, paving the way for wider use of the technology as a storage medium.

Harvard researchers have succeeded in storing an entire book on DNA and reading the information back, paving the way for the use of the building block of life as a high-density storage medium.

The research was published in Science on Friday. The researchers used a combination of commercial tools for DNA synthesis and new methods of DNA sequencing to store a copy of lead researcher George Church's forthcoming book Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves in DNA onto DNA.

"The density is remarkably high," Church says in a video explaining the research. "We can store on the order of almost a zettabyte [of data] in a gram of DNA."

This method can store data at densities many orders of magnitude greater than current non-biological techniques. By comparison, Church's DNA method can store around 125TB of information in one cubic millimetre of DNA, while prototype heat-assisted magnetic recording technology from Seagate can store 125GB of information per square inch.

The team stored the information by encoding the book as binary code and using the base pairs of DNA for binary characters. A and C stood for zero, while T and G for one. The book was split into 96-bit data blocks which each had a 19-bit address to allow them to be reassembled. Each block was written as its unique DNA sequence, which the team sequenced 54,898 of to create the book.

In the future, Church imagines a world full of "very inexpensive [DNA-based] biological cameras" that record video footage for later analysis by big data technologies. However, the cost of the sequencing and encoding technology would need to dramatically come down for such a scenario to be possible.

The funding for the research came from the US office of Naval Research, Agilent Technologies and the Wyss Institute.

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Posted in DNA

The First Book To Be Encoded in DNA

Two Harvard scientists have produced 70 billion copies of a book in DNA code --and it's smaller than the size of your thumbnail.

Lisa Poole / AP FILE

In his lab at the Harvard Medical School in Boston, George Church, Harvard Medical School Genetics professor, shows DNA sequence data for Dr. John Halamka, chief information officer, following a news conference on Monday, Oct. 20, 2008 where a group of mostly scientists and researchers said they will post their medical records and DNA sequence of some of their own genes online for the sake of research. Both George Church and Dr. Halamka are part of the group that plan to post their medical and DNA sequence of some of their own genes online.

Despite the fact there are 70 billion copies of it in existence, very few people have actually read the book Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves in DNA, by George Church and Ed Regis. The reason? It is written in the basic building blocks of life: Deoxyribonucleic acid, or DNA.

Church, along with his colleague Sriram Kosuri, both molecular geneticists from the Wyss Institute for Biomedical Engineering at Harvard, used the book to demonstrate a breakthrough in DNA data storage. By copying the 53,000 word book (alongside 11 jpeg images and a computer program) theyve managed to squeeze a thousand times more data than ever previously encoded into strands of DNA, as reported in the August 17 issue of the journal Science. (To give you some idea of how much information were talking about, 70 billion copies is morethan three times the total number of copies for the next 200 most popular books in the world combined.)

(MORE: The Meaning of Life According to Geneticist J. Craig Venter)

Part of DNAs genius is just how conspicuously small it is: so dense and energy efficient that one gram of the stuff can hold 455 billion gigabytes. Four grams could in theory hold ever scrap of data the entire world produces in a year. Couple this with a theoretical lifespan of 3.5 billion years and you have a revolution in data storage, with wide ranging implications for the amount of information we could record and store.

Dont expect your library to transform from paperbacks to vials of DNA anytime soon though. It took a decade to work out the next generation of reading and writing of DNA Ive been working on reading for 38 years, and writing since the 90s, Church tells TIME.

The actual work of encoding the book into DNA and then decoding it and copying it only took a couple weeks. I did it with my own two hands! says Dr. Church, which is very rare to have that kind of time to spend doing something like this. Church and Kosuri took a computer file of Regenesisand converted it into binary code strings of ones and zeroes. They then translated that code into the basic building blocks of DNA. The 1s stand for adenine (A) or cytosine (C) and the zero for guanine (G) and thymine (T), says Kosuri. Using a computer program, this translation was simple.

While the future implications and applications are not yet clear, the DNA storage industry is moving at an incredible speed. Classical electronic technology is moving forward something like 1.5 fold per year, says Dr. Church, whereas reading and writing DNA is improving roughly ten fold per year. Weve already had a million-fold improvement in the past few years, which is shocking.

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IntegenX Launches First RapidHIT Human DNA Identification System in Europe

PLEASANTON, Calif. & THE HAGUE, Netherlands--(BUSINESS WIRE)--

IntegenX Inc., a leading developer of rapid human DNA identification technology, today launched its RapidHIT Human DNA Identification System to the European law enforcement and forensic communities at the 6th European Academy of Forensic Science (EAFS) Conference in The Hague, The Netherlands. Representatives from IntegenX are on site at the meeting to demonstrate the self-contained desktop system and share data produced by its first users.

The RapidHIT System automates and accelerates the process of producing standardized DNA profiles from cheek swabs and other human samples in about 90 minutes. Rapid DNA analysis is a transformative technology that promises to fundamentally change the way investigations are conducted by enabling law enforcement personnel to quickly and definitively link suspects to crimes while they are still in custody.

We have spent a great deal of time working closely with the law enforcement, forensic and judicial communities to understand their needs and priorities for DNA-based human identification, and are now confident that we are the partner of choice to help the international community to successfully deploy this important advance in crime solving, said Stevan Jovanovich, President and Chief Executive Officer of IntegenX. This is a very exciting time as we introduce the worlds first rapid DNA analysis system to the professionals who will be on the cutting edge of implementing it to identify offenders, clear innocent suspects quickly, and prevent future crimes.

Numerous international law enforcement and security agencies use DNA-based human identification to make informed decisions regarding the arrest, detention or release of suspects, as well as to analyze crime scene evidence. By integrating a multi-step, multi-system process, rapid DNA technology has the potential to accelerate and expand the use of proven DNA technologies to help the efforts of law enforcement, homeland security, and defense to create safer communities.

The RapidHIT System will be on display at EAFS in exhibit space #58. Technical marketing manager Keith Elliot will describe the instrument and early data from users in Real-time DNA Using the RapidHIT 200, Tuesday, August 21 at 11:00 AM, and IntegenX will contribute additional information at the Mobile DNA Technologies workshop on Wednesday, August 22 at 9:30 AM.

IntegenX will begin shipping early access RapidHIT systems this month. The company will launch the system to the U.S. market at the 119th Annual International Association of Chiefs of Police Conference and Law Enforcement Education and Technology Exposition in San Diego, California, September 29 October 3, 2012.

In celebration of this historic milestone in forensics, IntegenX has produced a short video that features leaders in law enforcement discussing the impact of rapid DNA in crime fighting. The video is available for download and distribution at http://integenx.com/video-rapid-dna-with-the-integenx-rapidhit-200/.

About IntegenX Inc.

IntegenX, headquartered in Pleasanton, California, is a leading developer of rapid human DNA identification technology, next-gen sequencing library preparation, and DNA/RNA ambient temperature stability and storage products. IntegenX technology platforms are the result of the integration of advanced fluidics, optics, and biochemistry capabilities to produce products for DNA-based human identity testing and forensics, next generation sequencing and biodefense applications. The companys expertise and extensive intellectual property includes its patented MOVe valve technology, patent-pending PrepX reagent kits for next generation sequencing library preparation, as well as a portfolio of patented reagents for DNA and RNA preservation including GenTegra for stabilization and storage of purified DNA and RNA, and GenPlate for storage of blood samples. For more information, please visit http://www.integenx.com.

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IntegenX Launches First RapidHIT Human DNA Identification System in Europe

Posted in DNA

Harvard Stores 70 Billion Books Using DNA

Harvard researchers have been able to use sequencing technology to store 70 billion copies of a yet-unpublished book in DNA binary code.

The results of the project by researchers at Harvard University's Wyss Institute for Biologically Inspired Engineering at Harvard University were published last week in the peer-reviewed journal Science.

"The total world's information, which is 1.8 zettabytes, [could be stored] in about four grams of DNA," said Sriram Kosuri, a senior scientist at the Wyss Institute and senior author of the paper, in a video presentation.

The researchers created the binary code through DNA markers to preserve the text of the book, Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves in DNA. The book was written by research team member George Church.

"We ... wanted something that represents modern digital, so we used an HTML version of a book," Church said in a video presentation.

"The HTML form -- let's say the web form -- includes digital images [and a] Java script programming language that performs something interactively with a person. So we encoded that into zeros and ones into DNA," Church added.

A DNA double helix in an undated artist's illustration released by the National Human Genome Research Institute. (Source: Reuters)Church, a professor of genetics at the Harvard Medical School, helped develop the first direct genomic sequencing method in 1984. He was also a member of the team that initiated the Human Genome Project that year as a scientist working at Biogen Inc.

The Harvard researchers stored 5.5 petabits, or 1 million gigabits, per cubic millimeter in the DNA storage medium. Because of the slow process for setting down the data, the researchers consider the DNA storage medium currently suitable only for data archive purposes.

"The information density and scale compare favorably with other experimental storage methods from biology and physics," Kosuri said.

The team also included Yuan Gao, a former Wyss postdoctoral scholar and now an associate professor of biomedical engineering at Johns Hopkins University.

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Rep. Todd Akin needs to take a course in female biology

As soon as I read the comments that Rep. Todd Akin (R-Mo.) made Sunday about how legitimate rapes dont result in pregnancy, my first thoughts were 1) what an insensitive ignoramus, and 2) its long past time that we require our politicians to take and pass a course in female biology. After all, if theyre going to be enacting laws that affect womens health and bodies, they should at least understand how the female body works.

Its clear that right now many of them simply dont have a clue.

Akin showed his ignorance while defending his no-exceptions stance on abortion during an interview on a local Missouri television station Sunday morning. It seems to me, first of all, from what I understand from doctors [pregnancy from rape is] really rare, he told KTVI-TV. If its a legitimate rape, the female has ways to try to shut that whole thing down."

But lets assume that maybe that didnt work or something, he added. I think there should be some punishment, but the punishment ought to be on the rapist and not attacking the child.

Akins ridiculous idea that women have some kind of natural defense that somehow fights off conception during a legitimate rape isnt new to a particular wing of the political spectrum, as Garance Franke-Rute, a senior editor at the Atlantic, pointed out on Sunday afternoon:

Arguments like his have cropped up again and again on the right over the past quarter century and the idea that trauma is a form of birth control continues to be promulgated by anti-abortion forces that seek to outlaw all abortions, even in cases of rape or incest. The push for a no-exceptions anti-abortion policy has for decades gone hand in hand with efforts to downplay the frequency with which rape- or incest-related pregnancies occur, and even to deny that they happen, at all. In other words, it's not just Akin singing this tune.

Franke-Rute then quotes from a 1999 article written by Dr. John C. Willke, a past-president of the National Right to Life Committee and the current president of the ban-all-abortions Life Issues Institutes (and who may be one of those unnamed doctors that Akin referred to in his TV comments):

When pro-lifers speak of rape pregnancies, we should commonly use the phrase "forcible rape" or "assault rape," for that specifies what we're talking about. Rape can also be statutory. Depending upon your state law, statutory rape can be consensual, but we're not addressing that here .... Assault rape pregnancies are extremely rare.

.... What is certainly one of the most important reasons why a rape victim rarely gets pregnant, and that's physical trauma. Every woman is aware that stress and emotional factors can alter her menstrual cycle. To get and stay pregnant a woman's body must produce a very sophisticated mix of hormones. Hormone production is controlled by a part of the brain that is easily influenced by emotions. There's no greater emotional trauma that can be experienced by a woman than an assault rape. This can radically upset her possibility of ovulation, fertilization, implantation and even nurturing of a pregnancy. So what further percentage reduction in pregnancy will this cause? No one knows, but this factor certainly cuts this last figure by at least 50 percent and probably more.

Of course, Willke offers no scientific evidence to support this biologically bogus theory about rape, hormones and the menstrual cycle. And it is bogus. Although its difficult to truly know how many pregnancies result from rape because rapes are so underreported, a team of University of South Carolina researchers took a stab at it in 1996. They estimated that about 32,000 pregnancies resulted from rape each year in the United States.

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Rep. Todd Akin needs to take a course in female biology

Forget Flying Ant Day … it's actually a month! 4,000 people join 'citizen survey' to pin-point outbreaks across the UK

Survey led by University of Gloucestershire discovers there is no single day for swarming nuisance

By Eddie Wrenn

PUBLISHED: 04:36 EST, 20 August 2012 | UPDATED: 05:22 EST, 20 August 2012

One of the first major studies of 'Flying Ant Day' has revealed that the nuisance outbreaks can occur anytime in the space of a month.

The Society of Biology asked members of the public to cover their mouths and keep a record each time they saw the pesky insects take to the air in their annual battle to find a mate.

Adam Hart, an ecologist and insect expert at the University of Gloucestershire, led the call to arms, and discovered that the outbreaks could come anytime over the period of a month.

It was previously assumed the ants synchronised their swarms to increase their reproductive chances, but instead of the 'Friday night' approach, is appears there is a more complex pattern at play.

Swarming: The most common flying ants seen at the moment is the black garden ant, Lasius niger

More than 4,000 people responded to the survey across June and July, and their sightings reveal that even within a small town can have outbreaks on different days.

Hart told The Scientist: 'Its really too early to tell but even a casual glance at the data so far shows that flying ant emergence is a spatially and temporally complex event.

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Forget Flying Ant Day ... it's actually a month! 4,000 people join 'citizen survey' to pin-point outbreaks across the UK

NDSU Faculty Receives NSF Funding for Chemistry Research

Newswise Sivaguru (Siva) Jayaraman, Ph.D., associate professor of chemistry and biochemistry at North Dakota State University, Fargo, has received a three-year, $429,500 award from the National Science Foundation (NSF) to conduct research outlined in his proposal titled Light Induced Enantiospecific Chiral Transfer in Solution. The funding also provides research opportunities to graduate and undergraduate students to develop environmentally benign, green strategies to perform chemical reactions.

The research program in Dr. Sivas group focuses on using light to transfer molecular chirality in photochemical reactions (reactions initiated by light) to produce molecules that are chiral (have two non-superimposable mirror images) and make only one of the two possible forms (a single enantiomer).

Based on the funding from the National Science Foundation, his research group will study light-induced enantiospecific chiral transfer in solution. One of the research goals is to gain a fundamental understanding of interaction of light with photoreactive substrates, coupled with an intricate control over molecular reactivity, dynamics and non-bonding interactions to enhance stereoselectivity in the photoproducts.

Synthesizing chiral compounds with high stereoselectivity during light-induced transformations provides an opportunity to develop sustainable strategies with minimal impact on the environment, said Dr. Jayaraman.

Students learn how modern chemical methods can be used for synthesizing compounds with minimal environmental impact. With this most recent NSF funding, students involved in the proposed investigations will learn both traditional techniques to characterize and evaluate asymmetric induction during enantiospecific phototransformations and modern spectroscopic methods and characterization techniques to assess excited state reactivity.

The award is a renewal grant of Dr. Jayaramans CAREER award, which includes research opportunities for NDSU students. His research also provides opportunities to area high school students through a program called PICNICS (Parents Involvement with Children, Nurturing Intellectual Curiosity in Science).

As part of the PICNICS program, top area high school students conduct a variety of research each summer alongside graduate students and postdoctoral fellows at the Department of Chemistry and Biochemistry, NDSU, Fargo. The PICNICS program was developed by Dr. Jayaraman as an outreach component in his NSF CAREER award to engage high school students and their parents about recent science and technology advancements and to encourage high school juniors and seniors to consider science as a career path.

Dr. Sivaguru (Siva) Jayaraman joined the faculty at NDSU in 2006. He was promoted to associate professor in 2011. He previously received an NSF CAREER award in 2008, a Grammaticakis-Neumann Prize from the Swiss Chemical Society in 2010, a Young-investigator award from the Inter-American Photochemical Society (I-APS) in 2011, and a Young-investigator award from Sigma Xi in 2012.

At NDSU, Dr. Jayaraman received the 2010 Excellence in Research Award, 2011 Excellence in Teaching award and 2012 Peltier Award for Innovation in Teaching. He completed a post-doctoral fellowship at Columbia University, New York, N.Y., after receiving his Ph.D. from Tulane University, New Orleans, La. He received a masters degree in chemistry from the Indian Institute of Technology, Madras, India, and completed a bachelors degree in chemistry from St. Josephs College, Bharathidasan University, Trichy, India.

For more info regarding Dr. Sivaguru Jayaramans research, teaching and outreach visit http://sivagroup.chem.ndsu.nodak.edu/

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'True Blood' Recap: 'Sunset'

Vampire behavioral science and setup work for next week's season-ender were the name of the game in this week's episode of "True Blood," as most of the cast converges on Authority headquarters for the grand finale.

Hive-minded idealists Bill's rapid evolution from sensitive gentleman to power-hungry Lilith freak is one of the weirdest things to happen this season... and apparently, we're not the only ones who think so. Jessica, newly arrived at Authority headquarters, is shocked to see how her maker has changed. Her pleas to return to Bon Temps to warn Sookie and Jason of the Russell threat fail to sway him, and when she tries a bluff that appeals to Bill's newfound faith (giving Jason Stackhouse the gift of fangs), he calls her out with sneering superiority and sends her out to make good on it.

Instead, Jessica slips stakes her security detail and runs for Fangtasia, where Pam gives her a hiding place and us some long-awaited exposition. Namely: nesting behavior, which causes a group of vampires living in one home to act as catty and exclusive as a table of eighth grade mean girls. And at the Authority, the nest has been kicked into overdrive by blood-of-Lilith use... which explains not only Bill's devolvement into this season's biggest douche canoe, but also why the chancellors keep having visions of the bloodied and be-merkin-ed Lilith standing in various hallways and personally selecting them to lead the cause.

But not every Authority figure is on the train to Crazytown. Haunted by visions of the ghostly and disappointed Godric, Nora runs to Eric who, unlike the rest, has been faking his zealotry for forgiveness and makeup sex. And when a pissed-off visiting dignitary from the U.S. government presents an opportunity, Eric kills him and then takes off with Nora for a damage-control "glamouring campaign"... which is, of course, all a ploy to escape. And they do! Which is great, but considering that the big multi-cast-member finale looks to be taking place at the building they just left, they'll probably be back.

Where's Warlow? Back at the faerie bordello, Sookie looks for answers to her plight from an ancient elder faerie who, as Maurella explains, "operates on many frequencies at once" which is a nice way of saying that she's a dyed-in-the-wool weirdo. (She warns Sook that trouble is coming, but she also wants to know if she's "for or against" John Cougar Mellencamp and Boyz II Men.) The only thing that can sober her up? The news of Russell Edginton's return. The Elderfaerie vows that the Fae will fight, and when Russell and Steve find their way to the portal, it looks like she'll vanquish them post-haste... but no, the overconfident Elder makes a wild pitch, hits Jason Stackhouse with the vanquishing intended for Russell, and gets sucked to death in a matter of seconds. The bad news: no more mid-1990s R&B group references. The worse news: Russell's bellyful of blood means that he can now see the incredible, edible fae.

And now, your moment of zen Alcide. Shirtless. With an axe. You're welcome. And though we don't yet know what the werewolf's role in the final episode will be, Alcide and Daddy Herveaux have worked through their issues enough to tag team a marauding pack of babyvamps which sets them up nicely for whatever showdown is in store next week.

What did you think of this week's "True Blood"? Sound off in the comments and on Twitter!

Tags True Blood, TV Recaps

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'True Blood' Recap: 'Sunset'

DNA touted as a data-storage device

Researchers have encoded a full book in DNA, the largest amount of information stored on the biological medium yet.

The data encoded is the digital version of the book, made up of more than 50,000 words, 11 images and one computer program.

The overall size of the data is around 0.7 megabytes, report the scientists, led by George Church of Harvard Medical School. For their work, the researchers have used only off-the-shelf technology.

In their article, published online by Science magazine, the scientists argue that DNA has unique advantages for data storage.

They calculate that their method has by far the highest data density of any medium until now, beating flash media or even quantum holography by orders of magnitude. This is partly because DNA is three dimensional while other storage techniques are restricted to two dimensions.

Yet the main advantage of DNA storage may be durability. DNA can survive millenniums unharmed, as demonstrated by the sequencing of genetic information from ancient fossils.

At the same time, the tools and techniques necessary for reading out the information will be present in future generations, because they are ubiquitous in nature, the scientists write.

The main disadvantage at this time is expense. The authors admit that the cost and time needed to encode the information make it largely impractical at the moment.

But they point out that the cost of DNA synthesis and sequencing has been dropping by a factor larger than five each year, much higher than the rate for electronic media, albeit from a much higher starting point.

The scientists conclude that DNA is becoming an increasingly practical storage medium at a time when digital information is accumulating at an exponential rate.

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Posted in DNA

Researchers write book using DNA

Researchers have encoded a full book in DNA, the largest amount of information stored on the biological medium yet.

The data encoded is the digital version of the book, made up of more than 50,000 words, 11 images and one computer program. The overall size of the data is around 0.7 megabytes, report the scientists, led by George Church of Harvard Medical School. For their work, the researchers have used only off-the-shelf technology.

In their article, published on-line by Science magazine, the scientists argue that DNA has unique advantages for data storage. They calculate that their method has by far the highest data density of any medium until now, beating flash media or even quantum holography by orders of magnitude. This is partly because DNA is three dimensional while other storage techniques are restricted to two dimensions.

Yet the main advantage of DNA storage may be durability. DNA can survive millennia unharmed, as demonstrated by the sequencing of genetic information from ancient fossils. At the same time, the tools and techniques necessary for reading out the information will be present in future generations, because they are ubiquitous in nature, the scientists write.

The main disadvantage at this time is expense. The authors admit that the cost and time needed to encode the information make it largely impractical at the moment, except for highly specific applications, like century-scale archiving.

But they point out that the cost of DNA synthesis and sequencing has been dropping by a factor larger than five each year, much higher than the rate for electronic media, albeit from a much higher starting point. The scientists conclude that DNA is becoming an increasingly practical storage medium, at a time when digital information is accumulating at an exponential rate.

For their work, the researchers split into pieces the information of the book Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves, co-written by Church. They then synthesized short DNA fragments of around 160 nucleotides the bits in DNA. Each fragment carries part of the book, information about its position, as well as parts necessary for reading and replicating the piece.

In the process, the scientists have created 70 billion copies of the book. When reading out the information, the data was recovered with but 10 errors overall.

The first demonstration of encoding information into DNA dates back to 1988. Until now, the largest amount of data encoded in nucleic acid has been only 7,920 bits, around one-700th what Churchs team has accomplished. The authors report on a number of improvements over previous methods that make this feat possible, including a more flexible method of encoding data, using shorter and thereby easier to handle DNA pieces, and next-generation technologies for synthesis and sequencing.

For the future, the researchers propose improvements in compression and accuracy, to make the storage denser and less error-prone.

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Back-To-School Nutrition

August 19, 2012 (CHICAGO) -- Summer break is over, and as students head back to school, many are also returning to their athletic schedules. But staying fit isn't just a matter of working out. Nutrition is also important.

Registered dietitian Christine Palumbo (www.ChristinePalumbo.com), Good Sense Eating columnist for Chicago Parent magazine and a paid consultant to the California Raisin Marketing Board, says this is really a great opportunity to get young people engaged in talking about good nutrition and how they should be eating. She came into our ABC7 studio kitchen to show a recipe for a healthy snack.

Christine's Tips:

Ingredients: 6 whole wheat flour tortillas (8 inches) 6 tblsps smooth peanut butter 3/4 cup raisins

Method: 1. Warm tortillas on a hot griddle to soften enough for rolling. 2. Arrange on cutting board, and spread 1 tablespoon peanut butter evenly over each. 3. Sprinkle 2 tablespoons of raisins evenly on top of peanut butter. 4. Roll up tightly. Slice diagonally 1/2 -inch thick. 5. Serve immediately or wrap and pack into lunch box for later.

Nutrition Facts Per Serving: Calories 230 (30 percent from fat); Total Fat 9g (sat 1.5g, mono 4g, poly 2g, trans 0g ); Cholesterol 0mg; Protein 8g; Carbohydrate 38g; (Dietary Fiber 4g; Sugars 16g; ); Iron 2mg; Sodium 180mg; Calcium 23mg; Potassium 342mg

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From microbiology to macro football, Rudock readies for his time

Quarterback Jake Rudock during the media day for University of Iowa football at the practice field in Iowa City on Monday, August 6, 2012. (Cliff Jette/The Gazette-KCRG TV9)

IOWA CITY Jake Rudock and James Vandenberg have so much to talk about.

Whos the best organic chemistry professor? What about microbiology, any suggestions there? What are you going to do with those used Medical College Admissions Test prep books?

We actually do talk about classes more than youd think, Rudock said. What about this? Who do I not want [for a professor]? Who do I really have to avoid? Who do I not have to worry about?

Of course, theres also the football.

The Iowa quarterbacks are on similar paths in football and life. Vandenberg is the veteran on the field, 3,022 yards and 25 TDs last season. Hes also a fifth-year senior academically and a integrative physiology major who plans to take a run at the MCAT and medical school.

Caption: Iowa quarterback James Vandenberg (16) works out during the team's practice at Chaparral High School Tuesday, Dec. 27, 2011 in Scottsdale. The team is preparing for their Insight Bowl matchup against Oklahoma on December 30th. (Brian Ray/ SourceMedia Group News)

Rudock, a 6-3, 200-pound redshirt freshman, is the rookie. As a senior at St. Thomas Aquinas High School in Weston, Fla., he led his team to district, regional state and national titles with a 15-0 record. He took a redshirt in 2011 and now is poised for a run at No. 2 quarterback with junior-college transfer Cody Sokol also in that mix.

Iowa has been lucky in QB health. In the last five years, Iowa QBs have missed less than three games. The cautionary red flag is up at No. 2 simply based on experience. Vandenberg has 499 career attempts. The rest of the depth chart, might as well throw in true freshman C.J. Beathard and walk-ons Kyle Anderson and Dan Hartlieb, has zero.

Yes, this has first-year offensive coordinator Greg Davis attention.

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From microbiology to macro football, Rudock readies for his time

DNA evidence could bring PC Blakelock killers to trial

DNA evidence could finally bring the killers of PC Keith Blakelock to justice, 27 years after the policeman was murdered during the Broadwater Farm riots in Tottenham.

Reports yesterday claimed Scotland Yard were just weeks away from bringing charges against a man who was under 18 at the time of the murder. Two QCs agreed there is a "realistic prospect of prosecution", a key test for the Crown Prosecution Service, the Sunday Telegraph claimed.

Last night the Metropolitan Police denied charges were imminent but confirmed modern scientific techniques had been used to analyse DNA evidence from PC Blakelock's flame-retardant overalls and more than a dozen murder weapons as part of an ongoing cold case review of the crime.

Five men aged between 40 and 51 were arrested in 2010 and are still on police bail.

PC Blakelock, a 40-year-old father of three, was attacked as he tried to protect firefighters who were tackling a supermarket blaze at the height of the riot on the Broadwater Farm estate in October 1985. After stumbling he was surrounded by a mob screaming: "Kill the pig."

He was stabbed more than 40 times with different weapons, including a machete, and when he was finally dragged free by colleagues a kitchen knife was still embedded in his throat.

Winston Silcott, Mark Braithwaite and Engin Raghip were convicted in March 1987 of his murder but all three convictions were quashed four and a half years later after forensic tests on pages of key interview records suggested they had been fabricated. Silcott accepted 50,000 compensation from the Home Office but remained in prison for an unrelated murder and was released in 2003. None of the three men originally convicted is the suspect in the new case.

In 2003, Scotland Yard reopened the murder investigation after a review indicated there were possible new lines of inquiry. Fourteen men were arrested in 2010 on suspicion of involvement in PC Blakelock's murder or the attempted murder of PC Richard Coombes, who was also viciously attacked during the riot.

Since then nine of the men have been released without charge. The other five are still on police bail.

Botched convictions

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DNA evidence could bring PC Blakelock killers to trial

Posted in DNA

DNA checks done on family trees

Some people who have traced their family trees are now turning to science to see whether historical data is accurate.

For a few hundred dollars, a growing number of people are buying online DNA kits.

Dale Johns is president of the South Australian Genealogy Society.

"People who want to have their tests done, they can find a provider on the web and there's one we use in America," he said.

"They pay their money, they get a little kit and they take a swab out of their mouth and seal that up and send it back."

Ancestry researcher Antoinette Wade is enjoying the process.

"I recently had a test called Family Finder done and I have actually found some second cousins that I'm in communication with based on our DNA and that's very exciting," she said.

Another society member Robert Blair has had several tests done on DNA, and even had some cousins tested as well, to prove a person in his family tree did not belong there.

"The DNA tests showed that I was right. The ancestor that we thought was an ancestor wasn't really an ancestor," he said.

A DNA special interest group is among several that meet at Genealogy SA's headquarters, with others including English, Irish, German and other European groups.

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DNA checks done on family trees

Posted in DNA

'DNA wires' could help physicians diagnose disease

ScienceDaily (Aug. 19, 2012) In a discovery that defies the popular meaning of the word "wire," scientists have found that Mother Nature uses DNA as a wire to detect the constantly occurring genetic damage and mistakes that if left unrepaired can result in diseases like cancer and underpin the physical and mental decline of aging.

That topic DNA wires and their potential use in identifying people at risk for certain diseases is the focus of a plenary talk on August 19 during the 244th National Meeting & Exposition of the American Chemical Society in Philadelphia, Pennsylvania.

"DNA is a very fragile and special wire," said Jacqueline K. Barton, Ph.D., who delivered the talk. "You're never going to wire a house with it, and it isn't sturdy enough to use in popular electronic devices. But that fragile state is exactly what makes DNA so good as an electrical biosensor to identify DNA damage."

Barton won the U.S. National Medal of Science, the nation's highest honor for scientific achievement, for discovering that cells use the double strands of the DNA helix like a wire for signaling, which is critical to detecting and repairing genetic damage. She is a professor of chemistry and is chair of the division of chemistry and chemical engineering at the California Institute of Technology in Pasadena.

Damage is constantly occurring to DNA, Barton explained damage that skin cells, for instance, receive from excessive exposure to sunlight or that lung cells get hit with from carcinogens in cigarette smoke. Cells have a natural repair system in which special proteins constantly patrol the spiral-staircase architecture of DNA. They monitor the 3 billion units, or "base pairs," in DNA, looking for and mending damage from carcinogens and other sources.

Barton and other scientists noticed years ago that the DNA architecture chemically resembles the solid-state materials used in transistors and other electronic components. And DNA's bases, or units, are stacked on top of each other in an arrangement that seemed capable of conducting electricity.

"It's like a stack of copper pennies," said Barton. "And when in good condition and properly aligned, that stack of copper pennies can be conductive. But if one of the pennies is a little bit awry if it's not stacked so well then you're not going to be able to get good conductivity in it. But if those bases are mismatched or if there is any other damage to the DNA, as can happen with damage that leads to cancer, the wire is interrupted and electricity will not flow properly."

Barton's team established that the electrons that comprise a flow of electricity can move from one end of a DNA strand to the other, just as they do through an electrical wire. In one recent advance, the team was able to send electricity down a 34-nanometer-long piece of DNA. That might not sound like much -- a nanometer is one-tenth the width of a human hair. But that is just the right scale for use in medical diagnostic devices and biosensors to pick up on mutations, or changes, in DNA that could lead to cancer and other diseases.

Barton's research suggested that DNA uses its electrical properties to signal repair proteins that fix DNA damage. If the DNA is no longer conducting electricity properly, that would be a signal for repair proteins to do their thing. Barton's team is applying that knowledge in developing "DNA chips," devices that take advantage of DNA's natural electrical conductivity and its ability to bind to other strands of DNA that have a complementary sequence of base units, and thus probe that sequence for damage. Such a DNA chip would help diagnose disease risk by changes in electrical conductivity resulting from mutations or some other damage.

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'DNA wires' could help physicians diagnose disease

Posted in DNA

Science teachers spend week in Yellowstone studying climate change

A week in Yellowstone National Park with a bunch of climate scientists is how Shirley Greene, a biology teacher atLewis and Clark Middle School, spenther summer vacation.

"It's incredible," Greene said. "We've been talking to scientists, traveling around the park."

The teachers finished their week at the park onFriday. They'll return home just in time for classes to begin Wednesday, energized for the coming school year.

Greene attended the weeklong workshop with her husband, Steve Greene, who teaches earth science at West High and colleague Trish Loken, who also teachesbiology at Lewis and Clark.

The program at Yellowstone is part of the 12-park program called 2012 Parks Climate Change Challenge sponsored by the National Park Foundation.

Loken and the Greenes were part of a group of 15 public school teachers selected to attend the program at Yellowstone. Shirley Greene, a member of the Montana Science Teachers Association, found out about the programthrough the groupand applied.

The Parks Climate Change Challengeprogram is designed to help teachers develop engaging lesson plans, create hands-on service projects and plan field trips to help students better understand climate change and develop a strong connection to the national parks, said Al Nash, a Yellowstone National Park spokesman.

The group spent time with park scientists and staff from Montana State University covering everything from geology to biology.

Wednesday they learned about the vanishing biomes of the mountain pika, which has steadily moved its habitatup in elevation as temperatures increase.

"At some point you get to the top of the mountain and there's nowhere else to go,"Greene said.

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Science teachers spend week in Yellowstone studying climate change

Couple of reasons to attend Pathology Visions 2012

 Just a couple of reasons to attend Pathology Visions 2012:

KENNETH BLOOM

IMPLEMENTING A HIGH VOLUME DIGITAL PATHOLOGY REFERENCE LABORATORY

Bio
Kenneth_BloomDr. Bloom is Chief Medical Officer of Clarient a GE Healthcare company, Medical Director of Clarient Diagnostic Services and President of Clarient Pathology Services. Dr. Bloom specializes in pathology with a special interest in breast disease and esoteric testing including immunohistochemistry, fluorescence in-situ hybridization and molecular analysis. Dr. Bloom has spent more than two decades serving in leadership and advisory roles for hospitals, medical schools and industry. He has been a prolific researcher and lecturer in the fields of pathology, cancer, telemedicine and informatics. While at Rush Dr. Bloom was a principle investigator in the design and implementation of the first commercial telepathology system as well as the information systems used for Anatomic Pathology, Surgery, Cancer Registry and Radiation Therapy. Dr. Bloom is a member of the College of American pathologists and serves as a member of the Technology Assessment Committee Personalized Healthcare Committee.

Abstract
Clarient has been a leader in digital pathology since its start in 2004. We digitize over 2000 slides each day utilizing a variety of commercial scanners for diagnostic, prognostic and predictive indications. Approximately 50-60 consults are reviewed each day by a combination of our internal pathology team, remote Clarient pathologists and our network of academic pathologists around the country. Consultation slides are scanned at 20X magnification and reviewed on-line utilizing our proprietary viewer. Since all slides are digitized, real time consultation with clients and pathologists across the country is routine. Prognostic and predictive testing is performed on over 30,000 breast cancer cases each year, and most of our clients choose to utilize image analysis algorithms to aid them in their interpretation. An expanding portfolio of non-breast prognostic and predictive markers are being added these markers become relevant to patient care. I will discuss the issues that we faced building and then scaling a digital pathology service. Our analysis of scanners, viewers, image analysis software and image storage will be presented.

Objectives
1) Define the components of a digital pathology system.

2) Describe the pros and cons of available digital pathology solutions.

3) Understand the process of implementing a digital pathology solution in a CLIA laboratory.

 

 

 

 

 

PRASHANT BAVI

USE OF DIGITAL PATHOLOGY SIGNIFICANTLY IMPROVES THE QUALITY OF TISSUE MICROARRAY CONSTRUCTION

Bio
PbPrashant Bavi is a research pathologist at Research Centre, King Faisal Specialist Hospital, Riyadh, Saudi Arabia. He has a successful track record of over 50 publications in high impact peer reviewed journals and more than 70 presentations in international meetings. With 12 years of experience, he is well versed in oncology, biobanking, digital pathology, translational research & lab administration. Over the years, he has developed a diverse set of skills in anatomical pathology, molecular pathology, data management & biomarker validation. Other areas of his competence are scientific writing including reviewing manuscripts & serving on the editorial board. An avid proponent of digital pathology, he firmly believes in inculcating principles of productivity & time management such lateral thinking, mind mapping & “Getting Things Done” in research & diagnostic pathology. His long-term goals are harvesting the best quality samples, participate in meaningful biomarker discovery & making an impact on personalized medicine.

Abstract
Background: In the last decade, tissue microarray(TMA) has been established in translational cancer research as a high throughput tool. Similar to digital pathology, traditional purists took time to adopt TMAs as a tool in biomarker discovery and validation; teaching and as a IHC control for validation. Technology transfer, setting aside funds to purchase an arrayer, and dedicated personnel to map slides and construct TMA are still major bottle necks. Final quality of a constructed TMA depends on the yield of slides and the number of representative cores arrayed. Study of rare events in pathology pose a particular challenge for the lab personnel to accurately identify the area of interest by superimposing the slide on the paraffin block before extracting the tissue core. Therefore, we studied the effect of digital pathology in mapping the region of interest and constructing TMA’s.

Methods: We constructed two identical TMA blocs of 0.6mm diameter from 50 rare histological events that included R&S cells from Hodgkin’s lymphoma, multifocal microscopic carcinoma in thyroid and lymphovasuclar embol/perineural infiltration in colorectal carcinoma. One array block was done in the traditional way and the other array we did digital mapping of scanned images from slides, printing the life-sized images. Slides were scanned with Aperio ScanscopeCS; mapping done with Imagescope and TMA constructed using Semiautomated Arrayer, CM1 Mirlacher, Neuenburg, Germany. Using a image manipulation program IrfanView, we printed the images in the same aspect ratio as it was scanned on a semi-transparent paper.

Results: Preliminary results of 10 microscopic multifocal papillary thyroid carcinoma showed a 100% accuracy in picking up the microscopic lesions as compared to 60% with the traditional approach. Remarkably accuracy was associated with a increase in speed.

Conclusions: Modifying the process of TMA construction by embracing digital pathology is beneficial and should be adopted routinely. The tangible benefits are:(i) improved accuracy; (ii) saves time (iii) increases the speed; (iv) potentially reduces errors of misidentification and (v) frees up the lab technician to be utilized for other tasks.

Objectives
Although tissue microarray technology, as a high throughput tool, has revolutionized biomarker discovery in translational research, it has some key bottlenecks. Digital pathology has been used in IHC quantification. However, there is a potential of using scanned images for constructing tissue microarrays Embracing of these 2 technologies has immediate tangible benefits of improvement in speed, accuracy, saving of time and freeing up scarce technical staff. In addition this methodology reduced risk of misidentification and provides robust documentation of mapped images on for future usage.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

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Breaking News: Federal Appeals Court Once Again Upholds Gene Patents, Invalidates Comparison Method Patents

The U.S. Court of Appeals for the Federal Circuit announced that it once again partially reversed a lower court’s ruling in the Myriad gene patent case. In a 2-1 decision, the federal court of appeals ruled that companies can patent genes, but cannot patent methods to compare those gene sequences.

This is the second time the Federal appeals court has considered this lawsuit. The Supreme Court vacated this court’s July 2011 decision following the high court’s unanimous ruling in favor of Mayo Collaborative Services in its medical patent suit against Prometheus Laboratories. The Supreme Court then remanded it back to the Federal appeals court in light of the Mayo decision.

The American Civil Liberties Union (ACLU) is representing plaintiffs (including the CAP) in a suit challenging gene patents on human DNA, specifically Myriad Genetics’ patent claims on BRCA 1 and BRCA 2 genes. CAP and other medical societies and organizations provided amicus briefs in support of Mayo at various points in the litigation.

“It is extremely disappointing that despite the Supreme Court’s ruling, the appeals court has failed to fully re-consider the facts of this case,” said ACLU attorney Chris Hansen. “This ruling prevents doctors and scientists from exchanging their ideas and research freely. Human DNA is a natural entity like air or water. It does not belong to any one company.”

The ACLU declined to comment on what this means for the future of the case, except to say their attorneys are weighing all legal options and will discuss future strategies with the plaintiffs.

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Should/Could the FDA Regulate Whole Slide Imaging as a Class II Device?

Frequent readers and those who have heard me speak publicly on the topic of government regulation and oversight of whole slide imaging recognize that I really do not think that manufacturers need a stamp of approval from the FDA to the effect that "FDA Approved for Primary H&E Diagnosis" on their claims and marketing materials.  Perhaps manufacturers think they do because their sense is that more and more pathologists will in fact buy the technology if it indeed has that stamp of approval that the agency concerned with regulating food, drugs and devices in the bests interests of patient safety and assuring apprropriate risk:benefit ratios says it is OK to use for primary diagnosis.

With that being said, we now know it is unlikely that these devices will be regarded as Class I devices (see below).  As they will not be regarded as Class I, I think the device or instrument in question is then regarded as a Class III device requiring pre-market approcal "for which insufficient information exists to assure safety and effectiveness solely through the general or special controls sufficient for Class I or Class II devices" (see below according to The FDA Class Classification).

Why then could whole slide imaging devices/systems not be regarded as Class II?  

FDA_salmonellaLet's assume with whole slide imaging is regarded as being higher risk for potential injury or harm than a Class I device historically and essentially, according to the definition, "for which general controls alone are insufficient to assure safety and effectiveness, and existing methods are available to provide such assurances. In addition to complying with general controls, Class II devices are also subject to special controls. A few Class II devices are exempt from the premarket notification. Special controls may include special labeling requirements, mandatory performance standards and postmarket surveillance. Devices in Class II are held to a higher level of assurance than Class I devices, and are designed to perform as indicated without causing injury or harm to patient or user."

Don't we actually have this with digital pathology today?  Special labeling requirements, i.e. certain stains from certain vendors for purposes of prognostic and therapeutic testing (ER, PR, HER2, Ki-67), mandatory performance standards, i.e. constant review, quality assurance, correlations and peer reviews in surgical pathology, a degree of scrutiny unrivaled in any specialty in medicine in terms of self-auditing ourselves and lastly, postmarket surveillance. Here we have 100s of papers written with 1000s of cases studied in peer-reviewed literature and decades worth of experience as a specialty.  In a recent survey on digital pathology conducted, 20% of respondents  mentioned using digital pathology for primary clinical diagnosis.

Usesfordp

In a more recent follow up post on the survey a couple of weeks ago, there was discussion of the best use cases for digital pathology.  They are what this survey affirms, in my opinion, image analysis, i.e. ER/PR/HER2 scoring and second opinions/consultations/expert reviews.

Unless your practice is in New York and you are in Aspen, in which case you probably either need to move your lab or move yourself, I do not understand the need for "Primry H&E Diagnosis" by digital pathology.  The instances I can think of include in-office laboratories and the occassional times when you are in Aspen, 1000s of miles from your histology laboratory on a temporary basis.  Given the number of times of these occurrences and the number of slides produced and read in these types of practice settings, it is a very small percentage of the estimated tens of millions of slides produced annually in the United States.

Nonetheless, assuming we recognize more risk than the microscope itself in this instance (a Class I exempt device) and we are held to "special controls may include special labeling requirements, mandatory performance standards and postmarket surveillance", it would seem logical that whole slide imaging devices/systems be regarded as Class II and allow the market and practioners to define the nuances of these controls, standards and postmarket surveillance conditions.

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FDA Device Class Classification (as cut and pasted from Wikipedia):

The Food and Drug Administration has recognized three classes of medical devices based on the level of control necessary to assure the safety and effectiveness of the device.  The classification procedures are described in the Code of Federal Regulations, Title 21, part 860 (usually known as 21 CFR 860).

Class I: General controls

Class I devices are subject to the least regulatory control. Class I devices are subject to "General Controls" as are Class II and Class III devices. General controls include provisions that relate to adulteration; misbranding; device registration and listing; premarket notification; banned devices; notification, including repair, replacement, or refund; records and reports; restricted devices; and good manufacturing practices. Class I devices are not intended for use in supporting or sustaining life or to be of substantial importance in preventing impairment to human health, and they may not present a potential unreasonable risk of illness or injury. Most Class I devices are exempt from the premarket notification and/or good manufacturing practices regulation. Examples of Class I devices include elastic bandages, examination gloves, and hand-held surgical instruments.

Class II: General controls with special controls

Class II devices are those for which general controls alone are insufficient to assure safety and effectiveness, and existing methods are available to provide such assurances. In addition to complying with general controls, Class II devices are also subject to special controls. A few Class II devices are exempt from the premarket notification. Special controls may include special labeling requirements, mandatory performance standards and postmarket surveillance. Devices in Class II are held to a higher level of assurance than Class I devices, and are designed to perform as indicated without causing injury or harm to patient or user. Examples of Class II devices include powered wheelchairs, infusion pumps, and surgical drapes.

Class III: General controls and premarket approval

A Class III device is one for which insufficient information exists to assure safety and effectiveness solely through the general or special controls sufficient for Class I or Class II devices. Such a device needs premarket approval, a scientific review to ensure the device's safety and effectiveness, in addition to the general controls of Class I. Class III devices are usually those that support or sustain human life, are of substantial importance in preventing impairment of human health, or which present a potential, unreasonable risk of illness or injury. Examples of Class III devices which currently require a premarket notification include implantable pacemaker, pulse generators, HIV diagnostic tests, automated external defibrillators, and endosseous implants.

 

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