Prepping for FDA filing, Loxo rolls up data on its site-agnostic cancer med larotrectinib – FierceBiotech

CHICAGOWhen Merck & Co.s Keytruda won approval last week to treat tumors based on a common biomarkerrather than the location in the body where the tumor originated, talk was thatthe true start of precision medicine had arrived.

The $1.3 billion market cap biotech Loxo Oncology is hoping to be a part of that journey. At the American Society of Clinical Oncology meeting Saturday, Loxo posted the latest data for its experimental larotrectinib (LOXO-101), amedicationit hopes will treat an array of cancers innearly a dozen sites across the body.

The data showed that 50 larotrectinib patients withtumors harboring tropomyosin receptor kinase (TRK) fusions had a 76% objective response rate (ORR) across tumor types. The drug met its primary endpoint; key secondary endpoints, including progression-free survival and duration of response, had not yet been reached.

The data drewfrom three trials, a phase 1 study in adults, a phase 2 study called Navigate, and a phase 1/2 pediatric trial called Scout.The results were based on the intention-to-treat principle, using the first 55 TRK fusion patients enrolled to the three trials, regardless of their prior therapy or tumor-tissue diagnostic method.

In all, 44 adults and 12 younger patients were enrolled, with tumors identified by 14 different lab tests. The TRK fusion patients carried a host of primary diagnoses, including appendiceal cancer, breast cancer, cholangiocarcinoma, colorectal cancer, gastrointestinal stromal tumor, infantile fibrosarcoma, lung cancer and more.

The confirmed overall response rate was 76% in 50 patients, with these rates generally consistent across tumor types, TRK gene fusions, and various diagnostic tests, Loxo said in a statement.

In the pediatric setting, larotrectinib also showed promising activity in the presurgical management of patients with infantile fibrosarcoma, with three patients treated to best response.

The drug, developed in partnership with Array Biopharma,has a breakthrough designation from the FDA to treat children and adults with metastatic or inoperable solid tumors that test positive for the TRK biomarker, and who've either failed on previous treatments or have no acceptable alternatives.

In the safety department, Loxo says that seven(13%) of the study patients had their doses reduced because of side effects, but no patients stopped taking larotrectinib after suffering side effects.

All patients whose doses were lowered experienced tumor regression, which then continued on the reduced dose. Nearly all of the dose reductions were due to infrequent neurocognitive adverse events, likely a result of on-target TRK inhibition in the [central nervous system], Loxo explained.

Loxo added that sixpatients responded to larotrectinib but later progressed, a pattern referred to as acquired resistance.

The company is gathering other evidence forlarotrectinib'sapplication for FDA approval, slated for late this year or early next. Acentral, independent radiology review will be performed in the second half of 2017, and Loxo plans to announce that data before the end of the year. A separate assessment by independent radiologists, not yet conducted, will also be required to support its regulatory filing, the companynotes.

TRK is a neuron-stimulating factor that is active in fetal development but has its expression switched off later in life. In some cases, the TRK gene can fuse with other genes and reactivate, causing various forms of cancer.

Loxo's development program for the drug is agnostic to any particular tumor type, focusing instead on recruiting patients whose cancer cells express the TRK gene. If approved, the drug could be prescribed across multiple solid tumor types on the strength of genetic testing for neurotrophic TRK (NTRK) fusion proteins, which it will do with the help of Roche.

RELATED: Merck's Keytruda wins first FDA nod to treat genetically ID'd tumors anywhere in the body

NTRK mutations crop up in a small percentage of patients with any particular cancer, but they add up. The company estimated last year that between 1,500 and 5,000 late-stage cancer patients could be eligible for treatmentin the U.S. each year, with a similar number in Europe.

[T]he larotrectinib TRK fusion story fulfills the promise of precision medicine, where tumor genetics rather than tumor site of origin define the treatment approach," said David Hyman, lead investigator in the Navigate trial and chief of the early drug development service at Memorial Sloan Kettering Cancer Center."It is now incumbent upon the clinical oncology and pathology communities to examine our testing paradigms, so that TRK fusions and other actionable biomarkers become part of the standard patient workup."

The company also has two follow-up candidatesLOXO-292 and LOXO-195which target other cancer-causing genes resulting from fusions with kinase genes.

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Prepping for FDA filing, Loxo rolls up data on its site-agnostic cancer med larotrectinib - FierceBiotech

Combination therapy targets genetic mutation found in many cancers – Medical Xpress

June 2, 2017 Credit: CC0 Public Domain

A study at The University of Texas MD Anderson Cancer Center has shown promise for effective treatment of therapy-resistant cancers caused by a mutation of the RAS gene found in many cancers. The pre-clinical study combined therapies targeting the inhibitors polyADP ribose polymerase (PARP) and mitogen-activated protein kinase (MEK). The findings were published this week in Science Translational Medicine.

Mutations in the RAS gene account for more than 90 percent of pancreatic cancers, 50 percent of colorectal cancers, and 30 percent of lung cancers, and a significant portion of many other types of tumors. Unfortunately, these cancers are usually resistant to traditional treatments contributing to poor patient outcomes.

"Nowhere is the need for targeted therapies greater than for cancers driven by oncogenic RAS, which represents the most common type of potentially targetable mutation in cancer," said Gordon Mills, M.D., Ph.D., chair of Systems Biology. "Our study demonstrated that the rational combination of PARP and MEK inhibitors warrants clinical investigation in patients with RAS-mutant tumors where there are few effective therapeutic options."

PARP inhibitors block a key pathway for cellular DNA repair, effectively stopping many cancers with defects in DNA repair from growing, but the disease soon gains resistance due to the tumor's cell ability to adapt to stresses caused by the therapy. MEK inhibitors also are used to affect pathways often overactive in some cancers.

Mills' team found that combinations of PARP and MEK inhibitors evoked "unexpected cytotoxic effects" in vitro and in vivo in multiple RAS-mutant tumor models across tumor lineages where RAS mutations are prevalent. The combination therapy worked independent of mutations in tumor suppressor genes including BRCA1, BRCA2 and p53, suggesting the dual therapy's potential as a treatment for multiple RAS-mutant cancers. It also was effective for tumors that had become resistant to PARP, as well as in cells that did not have aberrations in BRCA1 and BRCA2, suggesting the combination could expand to a wide spectrum of patients likely to benefit.

"The sensitivity of RAS-mutant cells to the combination appears to be independent of intrinsic gene expression patterns, as observed across multiple different lineages," said Mills. "Because the synergistic responses to MEK1 and PARP1 combinations also were independent of p53 mutation status, the approach should be effective in both normal and mutant p53 tumors. Together, the in vitro and in vivo data argue that a MEK1 and PARP1combination offer the potential to induce cell death and increase the magnitude, duration and spectrum of PARP activity."

Currently, clinical trials in this area of investigation are under consideration at MD Anderson.

Explore further: New findings may enhance PARP inhibitors therapy in breast cancer

More information: C. Sun el al., "Rational combination therapy with PARP and MEK inhibitors capitalizes on therapeutic liabilities in RAS mutant cancers," Science Translational Medicine (2017). stm.sciencemag.org/lookup/doi/10.1126/scitranslmed.aal5148

Findings from a new study reveal that PARP inhibitors, an emerging class of drugs being studied in cancer clinical trials, may be enhanced by combining them with inhibitors targeting an oncogene known as c-MET which is overexpressed ...

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Researchers from the Wellcome Trust Sanger Institute and their collaborators have discovered that a greater number of breast cancers are genetically similar to rarer cases with faulty BRCA1 or BRCA2 genes. The results published ...

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About one-third of patients with ovarian cancer who wouldn't be expected to respond to a PARP inhibitor had partial shrinkage of their tumor when a kinase inhibitor was added to treatment, report scientists from Dana-Farber ...

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Broncos LB Todd Davis Eyes Consistency And Chemistry – Predominantly Orange

Sep 18, 2016; Denver, CO, USA; Denver Broncos inside linebacker Todd Davis (51) during player introductions prior to the game against the Indianapolis Colts at Sports Authority Field at Mile High. Mandatory Credit: Isaiah J. Downing-USA TODAY Sports

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Last season Todd Davis experienced what it was like to be an NFL starter. However the experience came with hard lessons and bits and pieces of success.

Davis registered 97 tackles and 0.5 sacks. While the stats dont necessarily scream starter or impact player, Davis adapted quickly against various elements of on field adversity.

Primarily, Davis was targeted by opposing offenses in coverage by going empty and running the tailback on certain routes. Davis lacked speed that would enable him to cover most tailbacks out of the backfield.

With the struggles that come natural on the playing field, so do the positive learning lessons. Living in the shadow and question of replacing Danny Trevathan, Davis focused on bettering himself.

In the journey of self fulfillment, Davis is embracing truth and learning to grow from it.

Its huge for me. I think it means that were going to tell the truth. By us telling the truth and living by the truth, were going to be better. We dont have to sugarcoat things. We just tell it how it is and we grow from that. Todd Davis on what the Truth motto means to him (Via Denver Broncos PR)

Davis understood that he struggled in pass coverage and expressed that he has been working hard to improve that area of his game. Davis spoke on his desire to remain on the field in key situations. I would love to stay on the field during those key third downs and in the down packages. Im definitely working on my coverage and just trying to have a reason for me to not be off the field

Surely, knowing that he must improve on his coverage means he understands that he must accomplish that in order to improve his shelf life and value as a member of an elite defense.

I just want to be better. I watched film and I saw some of the areas that I can improve in and some of the ways that I can enhance my game Davis said.

Another element that Davis said was important to him was developing chemistry with the man next to him, Brandon Marshall.

I think its been great Davis said.

Hes from Vegas and Im from California. Those places are so close together. Were able to bond and talk about things. [For example] growing up, we have a lot of similarities, childhood memories or things we used to listen to. I think that really brought us together. Just playing together, I think we have a chemistry like nobody else. Todd Davis on his chemistry with Brandon Marshall (Via Denver Broncos PR)

Davis spoke highly of new defensive coordinator Joe Woods and Head Coach Vance Joseph. He even went along to explain how Joseph has shifted the mentality of the entire team to compete and finish.

I love everything about him. I love his personality, his intensity and what he brings to the locker room and in the meeting room Davis spoke of Joseph. The passion that Joseph has for his defense is still there and its evident. I love seeing him getting fired up when we make a play in practice.

Todd Davis spoke of new defensive coordinator Joe Woods in a positive light as well. He just brings a new attitude, a new life to us. The way he calls plays and his mentality behind the defense is going to be huge for us.

Three years ago I was not fond of Todd Davis because I believed he wasnt ready. Last season was a big question mark heading into the year, but overall Davis impressed me as each week passed. A revealing stat was that Davis didnt miss a single tackle last season.

As an inside linebacker that is a phenomenal stat and gives Davis enough confidence to keep working hard and staying hungry. I still believe he needs to work heavily on his pass coverage, but other than that I am looking forward to what this season will bring for Todd Davis.

What are your thoughts Broncos Country?

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Broncos LB Todd Davis Eyes Consistency And Chemistry - Predominantly Orange

Theater Review | I Do! I Do!: Topnotch performers, genuine chemistry make musical believable – The Columbus Dispatch

By Michael Grossberg For The Columbus Dispatch

I Do! I Do!, a mid-1960s Broadway vehicle for Mary Martin and Robert Preston, is rarely revived these days.

Yet, thanks to the warm humor and affectionate sweetness of two topnotch performers, CATCO makes a sentimental case for the musicals old-fashioned portrait of a 50-year marriage. CATCOs season finale, which opened Friday in the Riffe Centers Studio Two Theatre, finds its heart in a husband-wife team of veteran actors.

Joe Bishara and Liz Wheeler have an easy comfort level and noticeably genuine chemistry with each other that naturally anchors their performances throughout the two-character, two-act, two-hour show. As Michael and Agnes Snow, the pair build an amusing, touching and convincing relationship from wedding night until well past honeymoon's end.

Bishara embodies Michaels initial romantic idealism but also his flaws, from unconscious arrogance and a writers self-absorption to a male chauvinism more common (and less disturbing) generations ago. Wheeler shapes a compelling arc from the girlish nervousness of a nave bride to the greater maturity of a patient housewife and mother. Well, patient up to a point.

Director Steven C. Anderson trusts the material, even when its quaint, and guides the performers to highlight the gentle humor and lilting melodies.

The singing is especially lovely in My Cup Runneth Over, the stand-out hit from the tuneful score by The Fantasticks team of composer Harvey Schmidt and author-lyricist Tom Jones. But the duet Nobodys Perfect has greater comic impact because the lyrics ring true.

Wheeler revels in the flamboyant opportunities for comic melodrama in Flaming Agnes, a revenge fantasy that follows Michaels confession of adultery. (Today, though, the song seems to trivialize the betrayal, as if men will be men and women should put up with them at their worst.)

Parental issues enliven the shorter second act, whose highlights include Michaels funny The Father of the Bride and the wish-fulfillment duet When the Kids Get Married.

Music director Quinton Jones expertly backs the performers on piano, visible behind a translucent rear grid and four movable cushioned squares of furniture that combine to form the couples four-poster bed.

The crisp staging and abstracted scenic design - by Darin Keesing, with golden-hued lighting by Cynthia Stillings - helps make the somewhat dated script seem timeless, or at least not as obviously rooted in the shows original era (1895-1945). Such rueful comedy-drama, about the predictable but comforting rites of lifes passages, sparks laughs of recognition as well as sighs.

Older couples, in particular, are likely to appreciate this musical the most because theyve lived through much of it.

mgrossberg1@gmail.com @mgrossberg1

CATCO will present I Do! I Do! at 8 p.m. Saturday, 2 p.m. Sunday, 11 a.m. Wednesday, 8 p.m. Thursday through June 10, 2 p.m. June 11, 11 a.m. June 14, 8 p.m. June 15-17 and 2 p.m. June 18 in the Riffe Centers Studio Two Theatre, 77 S. High St. Tickets cost $40 Fridays and Saturdays, or $35 Sundays, $30 Thursdays, $20 Wednesdays, $15 for students two hours before showtime. Call 614-469-0939 or visit http://www.catcoistheatre.org

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Puma Biotechnology Announces Positive PB272 Phase II Data from TBCRC 022 Trial in Patients with HER2-Positive … – Business Wire (press release)

LOS ANGELES--(BUSINESS WIRE)--Puma Biotechnology, Inc. (Nasdaq: PBYI), a biopharmaceutical company, announced the presentation of positive results from an ongoing Phase II clinical trial (Translational Breast Cancer Research Consortium TBCRC 022) of Puma's investigational drug PB272 (neratinib) for the treatment of HER2-positive metastatic breast cancer that has metastasized to the brain. The data were presented today in an oral presentation at the American Society of Clinical Oncology (ASCO) 2017 Annual Meeting in Chicago, Illinois.

The multicenter Phase II clinical trial enrolled patients with HER2-positive metastatic breast cancer who have brain metastases. The trial is being performed by the TBCRC and enrolled three cohorts of patients. Patients in the first cohort (n=40) included those with progressive brain metastases who were administered neratinib monotherapy. Data from this cohort were previously reported at the 2014 ASCO Annual Meeting and published in the Journal of Clinical Oncology in 2016. Patients in the second cohort (n=5) represent patients who had brain metastases which were amenable to surgery and who were administered neratinib monotherapy prior to and after surgical resection. The third cohort (target enrollment=60) enrolled two sub-groups of patients (prior lapatinib-treated and no prior lapatinib) with progressive brain metastases who were administered neratinib in combination with the chemotherapy drug capecitabine. The oral presentation reflects only the patients in the third cohort of patients without prior lapatinib exposure (cohort 3A, n=37), who all had progressive brain metastases at the time of enrollment and who received the combination of capecitabine plus neratinib. A full copy of the oral presentation that was presented at the ASCO Annual Meeting is available on the Puma Biotechnology website. Results from the second cohort and cohort 3B (prior lapatinib-treated) will be presented at a forthcoming medical meeting.

In cohort 3A, 30% of the patients had received prior craniotomy, 65% of the patients had received prior whole brain radiotherapy (WBRT), and 35% had received prior stereotactic radiosurgery (SRS) to the brain. No patients had received prior treatment with lapatinib.

The primary endpoint of the trial was central nervous system (CNS) Objective Response Rate according to a composite criteria that included volumetric brain MRI measurements, steroid use, neurological signs and symptoms, and RECIST evaluation for non-CNS sites. The secondary endpoint of the trial was CNS response by Response Assessment in Neuro-Oncology-Brain Metastases (RANO-BM) Criteria. The efficacy results from the trial showed that 49% of patients experienced a CNS Objective Response by the composite criteria. The results also showed that the CNS response rate using the RANO-BM criteria was 24%. The median time to CNS progression was 5.5 months and the median overall survival was 13.5 months, though 49% of patients remain alive and survival data are immature.

The results for cohort 3A showed that the most frequently observed severe adverse event for the 37 patients evaluable for safety was diarrhea. Patients received antidiarrheal prophylaxis consisting of high dose loperamide, given together with the combination of capecitabine plus neratinib for the first cycle of treatment in order to try to reduce the neratinib-related diarrhea. Among the 37 patients evaluable for safety, 32% of the patients had grade 3 diarrhea and 41% had grade 2 diarrhea.

Neratinib given in combination with capecitabine showed promising activity in patients with heavily pre-treated HER2-positive disease metastatic to the CNS, said Rachel A. Freedman, MD, MPH, Breast Oncology Center, Susan F. Smith Center for Women's Cancers, Dana-Farber Cancer Institute. Despite the introduction of several new treatments for patients with HER2-positive metastatic breast cancer, CNS progression events remain a major source of patient morbidity and mortality. Based on the results from TBCRC-022, we look forward to additional trials with neratinib-based regimens for HER2-positive CNS disease.

We are very pleased with the activity seen in this trial with the combination of neratinib plus capecitabine, said Alan H. Auerbach, CEO and President of Puma Biotechnology. As a small molecule that can cross the blood brain barrier, neratinib potentially offers patients with HER2-positive metastatic breast cancer that has metastasized to the CNS a novel HER2 targeted treatment option. We look forward to working with TBCRC on future trials of neratinib in patients with HER2-positive disease metastatic to the CNS.

About Puma Biotechnology

Puma Biotechnology, Inc. is a biopharmaceutical company with a focus on the development and commercialization of innovative products to enhance cancer care. The Company in-licenses the global development and commercialization rights to three drug candidatesPB272 (neratinib (oral)), PB272 (neratinib (intravenous)) and PB357. Neratinib is a potent irreversible tyrosine kinase inhibitor that blocks signal transduction through the epidermal growth factor receptors, HER1, HER2 and HER4. Currently, the Company is primarily focused on the development of the oral version of neratinib, and its most advanced drug candidates are directed at the treatment of HER2-positive breast cancer. The Company believes that neratinib has clinical application in the treatment of several other cancers as well, including non-small cell lung cancer and other tumor types that over-express or have a mutation in HER2. Further information about Puma Biotechnology can be found at http://www.pumabiotechnology.com.

Forward-Looking Statements

This press release contains forward-looking statements, including statements regarding the development and potential benefits of the Companys drug candidates, the Companys clinical trials and the announcement of data relative to these trials. All forward-looking statements included in this press release involve risks and uncertainties that could cause the Company's actual results to differ materially from the anticipated results and expectations expressed in these forward-looking statements. These statements are based on current expectations, forecasts and assumptions, and actual outcomes and results could differ materially from these statements due to a number of factors, which include, but are not limited to, the fact that the Company has no product revenue and no products approved for marketing, the Company's dependence on PB272, which is still under development and may never receive regulatory approval, the challenges associated with conducting and enrolling clinical trials, the risk that the results of clinical trials may not support the Company's drug candidate claims, even if approved, the risk that physicians and patients may not accept or use the Company's products, the Company's reliance on third parties to conduct its clinical trials and to formulate and manufacture its drug candidates, risks pertaining to securities class action, derivative and defamation lawsuits, the Company's dependence on licensed intellectual property, and the other risk factors disclosed in the periodic and current reports filed by the Company with the Securities and Exchange Commission from time to time, including the Company's Annual Report on Form 10-K for the year ended December 31, 2016. Readers are cautioned not to place undue reliance on these forward-looking statements, which speak only as of the date hereof. The Company assumes no obligation to update these forward-looking statements, except as required by law.

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Evolving Biotechnology – Good Herald

There are plenty of explanations of what biotechnology is, but the simplest one is that it is a field of study where biology is the foundation on which different kinds of technology are developed. Biotechnology is the basis of many different kinds of research in the fields of environment, food science, robotics, agriculture and medicine.

The human involvement in manipulating their environment is now at remarkable levels. From the most basic direct organism manipulations such as fermenting beer and culturing bacteria to advanced nucleotide-based organ regeneration and animal cloning, our knowledge and technology has advanced far beyond what anyone wouldve expected just a decade ago.

But even before there was a name to call it by, biotechnology was in existence. Even something that people have been doing for centuries, like preservatives to keep food edible during winter, is a form of biotechnology. When around 6000 BC, fruit juice was first fermented to form alcohol, it was another instance of biotechnology. Of course, it has emerged as a science only recently.

About twenty years ago, the role of genetics in artificially creating proteins in a living being was discovered. DNA was discovered and molecular biology became a part of mainstream science. This was what gave rise to the study of biotechnology under that name.

The mid 80s brought a revelation in biotechnology genetic structures could be modified by careful combinations between animals and plants. This introduction to transgenic organisms also developed an area for further research into disease resistance and productivity rate increases. Modern biotechnology is used in a variety of ways and the medical and biological research fields have managed to get the most benefit out of it. The methods used have gone beyond ordinary genetic transfers, to include actual plant-generated pharmaceuticals and substance production for antibiotics and insulin.

Modern biotechnology is practiced in three different categories red, white and green. Red Biotechnology is when the genetically altered microorganisms are used to produce medical and pharmaceutical substances, such as proteins, vitamins, antibiotics and vaccines etc. Its also used in genome manipulation.

White Biotechnology is also known as bio-manufacturing and Grey Biotechnology. This is not yet a completely established field and involves manipulating live organisms to create important industrial chemicals. Some of the organisms used in these techniques include bacteria, enzymes, moulds and yeast.

Agricultural Biotechnology, also known as Green Biotechnology, is whats applied into creating better, fresher, more nutritious and longer-lasting agricultural produce. A traditional agricultural biotechnology example is how wheat varieties are cross-bred to produce a disease-resistant crop.

If you are looking for the latest biotech news then take a look at this great new website. Full of details about innovations for the biotech industry , you cant afford to miss it. New inventions, ideas and theories make great reading.

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Bsc Biotechnology What Does The Course Cover? – Good Herald

If you are interested in a career in one of the most interesting areas of science then you should consider joining the field of biotechnology. Armed with a BSc Biotechnology degree, you will be able to apply for many interesting and high paying jobs across a number of industries. As a matter of fact, there are quite a few colleges in Dehradun that offer three year graduate programs in biotechnology because there is a great deal of demand for a degree in this field on account of its robust job prospects. Keep in mind that youll generally need to have a background in science (10 + 2) in order to be able to apply for this course because math, biology and chemistry are very important to students in this field.

The field of biotechnology is growing at a very rapid pace and it is also essential to many industries. The importance of this field comes from its ability to use technological methodologies to improve a number of biological systems in order to create new processes and products that have the ability to improve our life overall. The field of biotechnology consists of many different areas of study. Some of the most important ones are Immunology, Molecular Biology, Genetic Engineering, Microbiology and Environmental Biotechnology, just to name a few. Plant and animal biotechnology are also important areas of study.

Since the field of biotechnology is a very vast one that covers many different areas of study, it is best for you to understand which area appeals to you the best before you select a particular program. It is also important to keep in mind that the employment opportunities offered by each area of study differ considerably. Even so, you will find that employment opportunities for a BSc biotechnology graduate are fairly robust.

If you have a BSc Biotechnology degree then you will be able to get employment right away although a Masters degree will brighten your job prospects further. As a graduate, you will be able to get jobs in various fields including chemicals, pharmaceuticals, food processing and agriculture. The government is a very good source of jobs for biotechnologists and so are many large corporate houses. Waste management is a very important area these days and there is great need for biotechnologists who specialize in this area. As you can see, biotechnology is a very large and important field that is worth entering.

For more information on B.Sc Biotechnology. Visit Today http://bfitdoon.com/bsc-biotechnology.php

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Behavioral science hacks for your next speaking opportunity – SmartBrief (registration) (blog)


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Behavioral science hacks for your next speaking opportunity
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I was giving a presentation on behavioral science and customer experience at the end of a long conference. Sure, I could've hit my listeners over the head with an academic discourse on predicted utility versus value-seeking, but showing it drove the ...

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SHOP TALK: Eldar Shafir on the effects scarcity – centraljersey.com

Memorial Day weekend followed by Princeton University reunions and graduation is a time when most Princeton residents rarely think about scarcity. Generally, the conversation under tents and in backyards is filled with groans about too much food, too much drink, too many people, too many cars, and too much stuff loaded into those cars.

On the weekend of June 10, however, several Princetonians are going to be thinking a lot about scarcity, thanks to Princeton University Professor Eldar Shafir. Dr. Shafir who is speaking at a Housing Initiatives of Princeton Garden Party benefit June 10 is internationally renowned, along with his co-author Dr. Sendhil Mullainathan from Harvard University, for the 2013 book "Scarcity: Why Having Too Little Means So Much."

As a behavioral scientist whose main area of interest is behavioral economics and decision-making, Shafir will talk about the thesis of his book the scarcity vicious cycle and relate it to the mission of HIP. Individuals with a scarcity of funds fail to make smart decisions concerning their finances for a variety of cognitive reasons, including the lack of supportive resources, thus their lives spiral downward. It turns out that the work done by HIP could be a case study for Shafirs academic work.

Since 2004, the Housing Initiatives of Princeton has been helping to break that downward spiral for dozens of people by offering a holistic menu of services to those in dire financial circumstances. It is dedicated to transitioning low-income working families and individuals who are homeless or facing imminent homelessness to permanent housing and sustained self-sufficiency.

The charitable non-profit does far more than place a temporary roof over ones head. The organization becomes a supportive resource for clients by providing individualized case management services to enhance life skills needed to attain self-sufficiency and permanent housing and ultimately to succeed independently.

Most in Princeton have a comfortable life," Shafir said. "We can afford to hire accountants, investment brokers, mortgage brokers, psychologists, attorneys to help make smart decisions about our well being. But there are those who are struggling with a scarcity of funds and do not have the support systems. The problems associated with poverty consume mental energy and capacity. Those struggling financially often make decisions that perpetuate and exacerbate poverty."

The concept of scarcity and smart decision-making applies to more than financial decisions, and thus everyone can relate to the premise of the book, regardless of his or her economic situation, noted HIP Interim Board Chair Carol Golden. The authors research and conclusions describe how scarcity creates a similar psychology for everyone struggling to manage with less than they need. Busy people fail to manage their time efficiently for the same reasons the poor and those maxed out on credit cards fail to manage their money. The dynamics of scarcity reveal why dieters find it hard to resist temptation, why students and busy executives mismanage their time.

The book is so significant, in my opinion, because it gives individuals who have no financial problems a real understanding as to why it is extremely difficult for people with great financial challenges to change their lives unless they have access to outside help, said Golden, a Princeton resident and attorney who volunteers her services as the full-time chair of the organization, officially known as Housing Initiatives of Princeton Charitable Trust.

Shafir further elaborated on his thesis in a research paper, Poverty Impedes Cognitive Function, published in the August 2013 issue of Science (written with Anandi Mani and Jiaying Zhao).

According to the papers summary, the poor often behave in less capable ways, which can further perpetuate poverty.

We hypothesize that poverty directly impedes cognitive function and present two studies that test this hypothesis," the authors wrote. "First, we experimentally induced thoughts about finances and found that this reduces cognitive performance among poor but not in well-off participants. Second, we examined the cognitive function of farmers over the planting cycle. We found that the same farmer shows diminished cognitive performance before harvest, when poor, as compared with after harvest, when rich.

"This cannot be explained by differences in time available, nutrition, or work effort. Nor can it be explained with stress: Although farmers do show more stress before harvest, that does not account for diminished cognitive performance. Instead, it appears that poverty itself reduces cognitive capacity. We suggest that this is because poverty-related concerns consume mental resources, leaving less for other tasks. These data provide a previously unexamined perspective and help explain a spectrum of behaviors among the poor.

As Princeton University Professor of Behavioral Science and Public Policy, Shafir, who has been working at the university for the past 25 years, also serves as the director (its inaugural director) of Princetons Kahneman-Treisman Center for Behavioral Science and Public Policy, and co-founder and scientific director at ideas42, a social science research and development lab.

A $10 million anonymous gift created theCenter for Behavioral Science and Public Policy at Princeton, enabling the university to strengthen its leading role in this emerging field and improve the development of effective policymaking. The donor, a Princeton University parent, was a longtime admirer of the work of Dr. Daniel Kahneman, a Nobel laureate, and a Princeton University professor of psychology and public affairs emeritus, and Dr. Anne Treisman, a Princeton University professor of psychology emerita.

The center is building on the research that earned Kahneman the Nobel Prize in economic sciences in 2002. The award-winning work integrated insights from psychological research into economics, particularly concerning decision making under uncertainty.

In the traditional view, policies are designed for people who make rational decisions based on thorough consideration of the options and on well-informed cost-benefit analyses," the university stated in a release announcing the gift in 2015. "In the approach pioneered at Princeton, policies are developed with a focus on what really drives people in decision making the idiosyncratic and sometimes surprising ways in which they view their choices, perceive the social, economic and political world around them, and decide whether or not, and how, to act. Why do some people spend too much and save too little, choose unhealthy diets that might shorten their lives?"

Princeton University President Christopher Eisgruber said:

This generous gift will allow us to deepen and expand our efforts in an extremely promising area of teaching and research. . . . Princetons faculty members are applying behavioral science techniques to topics that include law, economics, health care, household finance and dispute resolution, Princeton University President Christopher Eisgruber said. "We expect that the research conducted at the center will directly influence local, national and global public policy, identifying new approaches to address social problems and improve lives.

And HIP clients and supporters offer an abundance, not scarcity, of thanks for the academic work and research that will help HIP serve the community in the most effective manner possible.

The Housing Initiatives of Princeton will host its annual Garden Party, June 10, beginning at 4 p.m. at a private residence in Princeton. Admission costs $95 and features Shafir's talk, cocktails and light fare. To register, go towww.housinginitiativesofprinceton.org.

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SHOP TALK: Eldar Shafir on the effects scarcity - centraljersey.com

People trust science. So why don't they believe it? – KING5.com

Alia E. Dastagir , USA TODAY , TEGNA 9:48 AM. PDT June 02, 2017

Members of the Union for Concerned Scientists pose for photographs with Muppet character Beaker in front of The White House before heading to the National Mall for the March for Science rally in Washington, D.C. (Photo: Jessica Kourkounis, Getty Images)

Editor's note: This story was originally published in April. It has been updated to include the latest on the Paris climate agreement.

Thousands of scientists and their allies filled the streets of the nations capital onEarth Day for theMarch for Science, advocating for the importance of scientific truth in an era weve ominously been told doesnt value the truth any longer. Just a week later, the People's Climate March in Washington, D.C., demanded policymakers not only respect science, but that they also act on it.

And now, drawing global dismay and condemnation,President Trump has announced that the U.S. willno longer participate in the landmark Paris climate agreement.

Advocates say science is under attack. President Trumps Environmental Protection Agency chief Scott Pruitt doesnt accept evidence that shows humans are causing climate change.Education Secretary Betsy DeVos'2001 commentson wanting to advance Gods kingdom through education have educatorsworried she could undermine the teaching of evolution in public schools.Trumps budget blueprint slashes funding for the National Institutes of Health and the Department of Energy's Office of Science.

Esteemed astrophysicist Neil deGrasse Tyson, in an impassioned video on hisFacebook page, said he fears people have lost the ability to judge what's true and what's not.

"That is a recipe for the complete dismantling of our informed democracy," he says.

The scientific community is alarmed by the Trump administration, and by whatthey see as the diminishing role of objectivescience in American life. But theGeneral Social Survey, one of the oldest and most comprehensive recurring surveys of American attitudes, shows that although trust in public institutions has declined over the last half century, science is the one institution that has not suffered any erosion of public confidence. Americans who say they have a great deal of confidence in science has hovered around 40% since 1973.

Many scientists say there is no war on their profession at all.

According to the 2016 GSS data released this month, people trust scientists more than Congress (6%) and the executive branch (12%). They trust them more than the press (8%). They have more trust in scientists than in the people who run major companies (18%), more than in banks and financial institutions (14%), the Supreme Court (26%) or organized religion (20%).

So why all the headlines about the "war on science"?

Though science still holds an esteemed place in America, there isa gapbetween what scientists and some citizens think a rift that is not entirely new on issues such as climate change, nuclear power, genetically modified foods, human evolution and childhood vaccines.

Americans dont reject science as a whole. People love the weather forecast. They love their smartphones. When people reject science, its because theyre asked to believe something that conflicts with a deeply held view, whether political (myparty does not endorse that), religious (my god didnot say that) or personal (that's not how I was raised).

Manyconservatives reject the science of man-madeclimate change, just as manyliberals reject the science that shows nuclear energy can safely combat it. The views we express signal which politicalgroup we belong to. The gap between what science shows and what people believe, sociologists say, is about our identity.

The issue of climate change isnt about what you know, said Dan Kahan, a professor of psychology and law at Yale and a member of the universitysCultural CognitionProject. Its about who you are.

Polarization has exacerbated our differences, andwe know some of whats to blame:Therise of social media. A more partisan press. A dearth of universally-accepted experts. And greater access to information, which Christopher Graves, president and founder of the Ogilvy Center forBehavioralScience, said does not tug us toward the center, but rather makes us more polarized.

A human being cannot grasp something as a fact if it in any way undermines their identity, Graves said. And that is animmutable human foible. These things have always been there, but not at scale."

The GSS data show confidence in institutions overall has been in decline since the 1970s, though political scientists are quick to caution that this is animperfect benchmark.

Brendan Nyhan, a political scientist atDartmouth College, said trust in the mid-20th century was unnaturally high and polarization was unnaturally low,bolstered by unusual growth in middle class income and a reduction of inequality, which is when the "20th century version of the American dream and the trust in government to produce it was fully mythologized."

There was an usually high level of trust that came out of World War II, before the turn towards a more cynical view ofthe institutions of society especially politics and media after Vietnam and Watergate,"Nyhan said.

So how much more polarization can we expect?

Social scientists aren't sure, but they agreeTrump complicates things.

"He really is an us-versus-them figure," Kahan said. "People arent thinking about the arguments. Theyre thinkingaboutwhat side they're on."

Think about the way you search for information. If youre a new mom who believes vaccines cause autism (and a number of women in your mommy group do, too) are you searching for research that shows whether they actually do, or are you Googling vaccines cause autism to find stories to affirm your belief? (Studies show there isno link between vaccines and autism.)

The mother above is probably motivated by fear. Suchmotivated reasoning,says political scientistCharles Taberof Stony Brook University, shows that we are all fundamentally biased.

You have a basic psychological tendency to perpetuate your own beliefs, he said to really discount anything that runs against your own prior views.

It gets even more complicated.Once weve convinced ourselves of something, research suggests factsdont appeal to us.A studyco-led by Nyhanfound that trying to correct a persons misperception can have a backfire effect. When you encounter facts that dont support your idea, your belief in that idea actually grows stronger.

So what if we did a better job teaching people how science works? Doesn't help, Kahan said. Research shows peoplewith the most science intelligence are also the most partisan.

Its not knowledge but curiosity, Kahan says, that makes us more likely to accept scientific truths. Arecent studythat Kahan led found people with more scientific curiosity were more likely to be open-minded about information that challenged their existing political views.

And arguing helps, too. ScientistsHugo Mercier and Dan Sperber contend in their new book,The Enigma of Reason,that reason isn't somethingthat evolved sohumans could solve problems on their own. It developed so we could work together.

Instead of forcing someone to agree that climate change is caused by humans, Graves said, you can stop once you agree that, for example, flooding in Florida is a problem, and that you have to fix it (the biparti
sanSoutheast Florida Regional Climate Change Compactcan teach us about that).

Marcia McNutt, an American geophysicist and president of the National Academy of Sciences, said she isnt worried about a crisis of science, though she hopes more people would understand science is about the unbiased search for truth" and that benefits everyone.

Being a scientist only means that when I have an intuition about something, I test that intuition, and see if Im right, she said. A very, very smart mentor told me once, I don't trust anyone who hasn't at least changed their mind once in their career.

Science, it appears, may havemore lessons for usthan we think.

2017 USATODAY.COM

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People trust science. So why don't they believe it? - KING5.com

Why Mainstream Media Need to Be Careful About Criticizing Conservatives – Patheos (blog)

Image of newspapers (Wikipedia Commons)

Written by Dr. Gleb Tsipursky, Intentional Insights Co-Founder and President.

________________________________________________________________

Many mainstream media outlets criticized conservatives with a broad brush over the Montana Congressional special election winner Republican Greg Gianforte assaulting a reporter, Ben Jacobs. Yet, according to behavioral science research conducted by myself and others, such criticism may end up hurting the safety of journalists, instead of advancing freedom of the press and pursuit of the truth.

First, the facts of the incident itself. According to the evidence available, Gianforte grabbed Jacobs by the neck, slammed him to the ground, and punched him. The episode was witnessed and corroborated by multiple independent witnesses, including Fox News and BuzzFeed reporters. The local sheriff who earlier gave a financial contribution to Gianfortes campaign charged Gianforte with misdemeanor assault.

How did conservatives respond? The assault took place on the evening of May 24, and Fox News which had a reporter on scene quickly wrote up a fair and balanced account. The Fox News account specifically stated that at no point did any of us who witnessed this assault see Jacobs show any form of physical aggression toward Gianforte, which Fox News certainly did not have to do. In fact, the Fox News story contradicted the official statement offered by Gianfortes campaign, which accused Jacobs of starting the fight by grabbing Gianfortes wrist, a statement now widely seen as a lie. A conservative venue, TheBlaze, ran a piece critical of Gianfortes statement, and The New York Post ran a similar piece.

Many conservative politicians also responded in a worthy manner. Within 24 hours of the assault, Speaker of the House Paul Ryan stated that Theres never a call for physical altercations I think he should apologize. This length of time is quite reasonable, as Ryan needed to find out the relevant facts. Steve Daines, a Montana Senator and major supporter for Gianforte, also called on Gianforte to apologize, adding I do not condone violence in any way. Under such pressure, Gianforte rescinded his earlier deceptive official statement and instead apologized, saying I should not have treated that reporter that way, and Im sorry Ben Jacobs.

Meme saying People are most comfortable dealing with reality in terms of black or white, but reality tends to come in shades of gray (Made for Intentional Insights by Wayne Straight)

Certainly, some conservatives did not respond well. The conservative radio show host Rush Limbaugh practiced victim-blaming, implying that Gianfortes actions were not a big deal because the journalist was being insolent and disrespectful. The Daily Caller, a prominent conservative website, ran a story about some Montana voters supporting Gianfortes actions. A former Republican congressman defended Gianforte.

Such problematic responses that appeared to condone or ignore violence against reporters do not represent the majority of conservative responses. Nonetheless, The New York Times ran a story entitled A reporter was body slammed, but some conservatives want the news media to apologize. Chris Cuomo of CNN had harsh words for the Republican Party on the morning after the incident, asking You know what I hear? Silence. Where is the GOP? The Philadelphia Inquirer carried a piece entitled In Trumps America, that reporter body slam didnt come out of nowhere.

Other mainstream venues downplayed condemnation by conservatives of Gianfortes behavior and emphasized those standing by him. The Washington Post, in its editorial responding to the incident, quoted Ryans words supporting the right of people from Montanan to elect their representative, while failing to mention that he demanded an apology. In turn, The Atlantic quoted a joke made by Republican Representative Mark Sanford, while conveniently forgetting that Sanfords response also condemned the culture of hostility toward the media that contributed to Gianfortes behavior.

Meme saying Look for the actual truth, not for what just supports your beliefs (Made for Intentional Insights by Lexie Holliday)

Unfortunately, the content on these mainstream media venues fails to provide an accurate depiction of reality, which harms journalist safety. Most of the content does acknowledge in the depths of each piece that many conservatives condemned Gianfortes behavior. Yet behavioral science research on news consumption shows that 59 percent of Americans are casual readers who only read the headlines. Thus, many casual independent or conservative readers would fail to perceive the widespread condemnation by conservative leaders of Gianfortes assault.

This outcome harms the safety of journalists. Research shows that our minds interpret new information in accordance with our past beliefsa thinking error known as the confirmation bias. The confirmation bias is one of several thinking errorsknown in behavioral science scholarship as cognitive biasesthat lead to motivated reasoning, where people pre-select a certain conclusion and reach that conclusion regardless of the facts. Fortunately, we can fight the confirmation bias in such situations by evaluating the opinions of prominent influencers who have political motivations to support one side, but fail to do so or even support the other side. Such strategies have effectively changed peoples perspectives even in our current polarized environment. Unfortunately, many mainstream venues failed their readership by not conveying the data needed for them to draw accurate conclusions and thus advance press freedom.

Meme saying Lizard brain thinking is killing democracy, please think rationally (Made for Intentional Insights by Ed Coolidge)

Another problem comes from one of the strongest findings in behavioral science, which shows that human beings respond very strongly to positive reinforcement. Through the style of their coverage painting all conservatives with a broad brush, these mainstream venues fail to provide positive reinforcement to conservatives who behaved in a prosocial manner. Research suggests that optimal performance comes from a combination of internal and external motivations. External incentives according to research, are especially crucial for promoting prosocial behavior such as protecting freedom of the press.

A further issue is the equating of Trumps behavior with Gianfortes actions. Conservative venues such as Breitbart immediately took the opportunity to condemn such comparisons, and call out what the article depicted as media hypocrisy for failing to do the same when liberals used violence. As others have accurately pointed out, while Trumps actions help create a climate of hostility to the media, it is much more difficult to connect Gianfortes actions to Trumps words. Drawing such connections undermines the already-low media credibility. A much better model for reporting on this connection came from a conservative venue, The American Conservative. It ran a piece that accurately describes how the hostility to mainstream media among Republicans predated Trump, while acknowledging that Trump ramped up this hostility, and criticizing Gianforte for lacking anger management skills. Such reporting, by providing an accurate depiction that attributes only
a small part of the blame to Trumps actions, helps protect journalists.

Next time, these mainstream venues need to provide accurate reporting to avoid undercutting their credibility, to praise prosocial behavior to create incentives and positive reinforcement, and to have all readers take away accurate impressions from their headlines. You can make a difference by writing letters to the editor and making social media posts asking journalists to commit to accurate reporting and to take the Pro-Truth Pledge for the sake of protecting the safety and freedom of the press. What you can do right now is take the pledge yourself to show your own commitment to the truth.

Meme saying Why do we seek the truth? Because its the right thing to do (Made for Intentional Insights by Wayne Straight)

P.S. Want less lies in politics? Take the Pro-Truth Pledge, encourage your friends to do so, and call on your elected representatives to take it!

_______________________________________________________________

Connect with Dr. Gleb Tsipursky on Twitter, on Facebook, and on LinkedIn, and follow his RSS feed and newsletter.

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Why Mainstream Media Need to Be Careful About Criticizing Conservatives - Patheos (blog)

The 2007 Nobel Prize in Physiology or Medicine – Advanced …

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The 2007 Nobel Prize in physiology or medicine is awarded to Drs Mario R. Capecchi, Martin J. Evans and Oliver Smithies for their discoveries of principles for introducing specific gene modifications in mice by the use of embryonic stem cells. Their work has made it possible to modify specific genes in the germline of mammals and to raise offspring that carry and express the modified gene. The toolbox of experimental genetic methods developed by Capecchi, Evans and Smithies, commonly called the knockout technology, has permitted scientists to determine the role of specific genes in development, physiology, and pathology. It has revolutionized life science and plays a key role in the development of medical therapy.

Martin Evans identified and isolated the embryonic stem cell of the early embryo, the cell from which all cells of the adult organism are derived. He established it in cell culture, modified it genetically, and reintroduced it into foster mothers in order to generate a genetically modified offspring. Mario Capecchi and Oliver Smithies, independently of each other, discovered how homologous recombination between segments of DNA molecules can be used to target genes in the mammalian genome and developed methods to generate genetically modified mice. Such animals have become indispensable in medical research. Furthermore, the knowledge concerning stem cell biology and gene technology obtained during the research that led to the "knockout mouse" has changed our understanding of normal development and disease processes and identified new avenues for medical therapy. Fig. 1 shows the general strategy for gene targeting in mice.

B) These ES cells are injected into blastocysts, which are injected into foster mothers to generate chimeric mice able to transmit the mutant gene to their progeny. To facilitate isolation of the desired progeny, the ES cells and recipient blastocysts are derived from mice with different coat colour alleles. In the figure, gene targeted ES cells and their progeny are shown in red and blastocysts in yellow.

A stem cell is a cell that is capable of extensive proliferation, creating more stem cells (self-renewal) as well as more differentiated cellular progeny. Somatic stem cells are necessary for renewal of the tissues of the adult organism. For instance, hematopoietic stem cells in the bone marrow differentiate into blood cells, i.e. erythrocytes, megakaryocytes/platelets, and the different types of leukocytes. While each somatic stem cell of the adult organism is committed to a certain line of differentiation, the early embryo contains stem cells that are totipotent, i.e. they give rise to all cell types in the developing organism. Therefore, the thought that embryonic stem cells from the blastocyst could be used to create to a living mammalian organism has fascinated scientists for many years.

The concept that differentiated cells and tissues are derived from undifferentiated stem cells ("Stammzellen") was already proposed a hundred years ago [1]. However, their precise properties remained elusive for many decades. Studies of testicular teratomas showed that these tumours contain totipotent cells. In the 1950s, Leroy Stevens at the Jackson Laboratory found that mice of the 129Sv strain have a high frequency of such tumours. He showed that their cells could develop into embryoid bodies, i.e. aggregates of embryonic cells. When transplanted, such aggregates could induce solid tumours with many different cell types [2, 3]. A few years later, Kleinsmith and Pierce demonstrated that such tumours were derived from undifferentiated embryonal carcinoma cells [4].

The development of cell culture techniques permitted investigators to establish cultures of embryonal carcinoma cells (EC cells) from murine testicular teratocarcinomas. Several scientists including Martin Evans at the University of Cambridge reported on such cultures in the early 70s [5-7].

Evans obtained 129Sv mice from Stevens, established a colony of mice, and characterized the teratoma derived cells in culture [8, 9]. These embryonal carcinoma (EC) cells could be grown on feeder layers of irradiated fibroblasts. When the latter were withdrawn, extensive in vitro differentiation occurred. It proceeded through a primitive embryonic endoderm, which clumped into embryoid bodies. Attachment on a solid surface gave rise to all kinds of cell types, including skin, nerve, beating cardiac muscle, etc. This showed that the EC cells differentiated in the same way as the inner cell mass of the mouse embryo [8, 9].

Evans saw the potential in using these EC cells not only for cell culture studies but also for creating chimeric mice. In order to realise this vision, he established a collaboration with Richard Gardner in Oxford, who made injections of EC cells into blastocysts and reimplanted them into foster mice. The offspring was chimeric, with contributions from EC cells in nearly every tissue [10]. Similar findings were made by several other groups at about the same time, [11] [12]. However, chimeric mice carrying EC derived cells developed multiple tumours and could not contribute to the germ line due to karyotypic abnormalities.

It became obvious to Evans that an alternative strategy had to be used if one were to obtain germline transmission derived from cultured embryonic stem cells. With the use of monoclonal antibodies, he characterised cell surface macromolecules of EC cells and their normal counterparts, thus identifying molecular markers of early differentiation [13]. The results suggested that normal cells with a similar phenotype as EC cells could be found and used for experiments. In 1980, Evans teamed up with the embryologist Matt Kaufman to combine cell culture and embryo manipulation. As described by Evans in a later review [14], he had intended to use haploid embryos for cell culture but prepared some diploid ones as controls. Evans writes [14]:

"When I cultured these blastocysts as explants in tissue culture, using a medium that had been honed for optimum cloning efficiency of both mouse and human EC cells, I immediately noted an outgrowth of EC-like cells. These cells were clearly recognizeable as the sought-after pluripotential cells, and they passed every test: They formed teratomas in vivo, and they differentiated in vitro. They bore the cell surface antigens that we expected. They stained strongly positive for alkaline phosphatase, were karyotypically normal and, most importantly, made splendid chimeras."

These cells were the embryonic stem cells (ES cells) that became critical for the success of gene targeting. Evans and Kaufman published their report on ES cells in a seminal paper in Nature in July, 1981 [15]. Gail Martin, a former co-worker of Evans, reported similar findings half a year later [16]. In their Nature paper, Evans and Kaufman pointed out the possibility of using ES cells for gene modification. They wrote [15]:

"Their [i.e. ES cells] use as a vehicle for the transfer into the mouse genome of mutant alleles, either selected in cell culture or inserted into the cells via transformation with specific DNA fragments, has been presented as an attractive proposition. In many of these studies the use of pluripotential cells directly isolated from the embryos under study should have great advantages."

Evans' team set up blastocyst injection techniques to test whether indeed ES cells could contribute to functional germ cells and thus be used to create a chimeric mouse. They reported successful germline transmission in 1984, in another landmark paper in Nature [17].

The next step was to determine whether ES cells could be used to introduce genetic material into the germline. Evans and his co-workers infected ES cells with a recombinant retrovirus before injecting them into blastocysts [18]. Retroviral DNA was identified in the founders and transmitted to the F1 offspring, demonstrating introduction of the foreign DNA into the mouse germline [19]. In October, 1986, Evans et al. reported their findings in Nature and concluded that "cultured embryonic cells provide an efficient means for the production of transgenic animals" [19]. In December of that year, another laboratory reported germline transmission of a neomycin resistance gene that they had introduced into ES cells by retroviral infection [20].

Evans now took the important step of introducing a mutant form of a specific, endogenous gene into the mouse genome. He and his co-workers transferred a mutant gene for hypoxanthine phosphoribosyltransferase (HPRT), which is defective in Lesch-Nyhan syndrome, an X-linked monogenic defect of purine metabolism [21]. Several copies of the mutated HPRT gene were introduced into the genome of the ES cells by retroviral infection in culture. Mutated ES cells were injected into blastocysts and contributed to chimeras. The mutations were transmitted germline and identified in the male offspring as loss of HPRT activity. In a paper published in Nature back-to-back with the one from Evans' lab, Hooper et al in Edinburgh reported germline transmission of another mutated HPRT gene, a spontaneous deletion mutation in ES cells [22]. For the first time, models of human disease had been created by genetic manipulation of ES cells.

In their paper [21], Evans and his co-workers point out that their success "opens up the possibility of deriving strains carrying specifically induced alterations in other genes" and suggest that "it may also eventually be possible to produce specific alterations in endogenous genes through homologous recombination with cloned copies modified in vitro", citing the work of Capecchi and Smithies [23, 24]. Indeed, the combination of the two technologies revolutionized experimental medicine, as we now know nearly 20 years later.

The mouse has been a favourite animal for genetic studies for many decades and was an obvious choice for the first attempts to introduce new genes into the mammalian genome. Work in several laboratories had defined conditions for manipulating fertilized mouse eggs and blastocysts in culture. Using these culture techniques, SV40 virus DNA was introduced into blastocysts, which were subsequently implanted into pseudopregnant foster mothers. SV40 DNA could be detected in the offspring but it was impossible to demonstrate with certainty whether the DNA was integrated into the host genome, or remained as episomes [25]. A few years later, the first transgenic mouse was created by infecting embryos with Moloney leukemia virus [26]. A DNA copy of the viral RNA was present in the genome of the transgenic mice and was transferred to the offspring in a Mendelian fashion, therefore virus DNA had been introduced into the mouse germline. Subsequent development has made it possible to introduce and overexpress a large number of transgenes in mice and also other mammals [27]. However, integration of the foreign DNA in the genome occurs at random and the number of copies varies. Although an important tool in life science, transgene technology of this kind lacks precision with regard to the inserted gene and cannot be used to manipulate endogenous genes in a predetermined manner. These inherent problems with the transgenic overexpression technique limit its usefulness.

The principle of recombination between homologous genes has been known for half a century and was recognized by a Nobel Prize to Joshua Lederberg in 1958 for his studies in bacteria. In the 70s, it became evident that eukaryotes employ a similar machinery to mediate exchange of genetic information between homologous chromosomes during meiosis. Early studies in yeast were followed by experiments demonstrating recombination between retroviral DNA sequences in the mammalian genome and introduced oligomeric retroviral DNA. Pioneering work by Richard Axel (2004 Nobel Prize for the discovery of odorant receptors) showed that cultured mammalian cells defective in thymidine kinase could be rescued by introduction of the herpes virus thymidine kinase (tk) gene [28]. Mario Capecchi decided to improve the method and used a fine glass pipette to inject DNA directly into the nucleus [29]. This improved the efficiency of gene transfer dramatically and Capecchi's method was rapidly adopted by other investigators to introduce new genes into fertilized mouse embryos and produce transgenic mice [30]. However, the transferred gene was still introduced at random in the host genome.

Capecchi now made a crucial observation: when the tk gene was injected, copies were integrated in only one or two loci of the host genome, with multiple copies forming head-to-tail concatemers. He reasoned that such concatemers could only be generated by two mechanisms: either by replication or by homologous recombination. A series of careful experiments were performed, which unequivocally demonstrated that head-to-tail concatemers were generated by homologous recombination [31]. This, in turn, provided evidence that mammalian somatic cells possess an efficient enzymatic machinery for mediating homologous recombination. If this machinery could be harnessed to accomplish homologous recombination between a newly introduced DNA molecule and the same DNA sequence in the recipient cell's genome, any cellular gene could be mutated.

Capecchi now submitted a grant proposal to the U.S. National Institutes of Health to test the feasilibity of gene targeting in mammalian cells. It was rejected since the reviewers considered it extremely unlikely that the introduced DNA would find its matching sequence within the host genome (cited by Capecchi in a later review [32])! At about the same time, Martin Evans et al in England proposed a similar strategy in a grant application to the UK Medical Research Council, which was also turned down for being over-ambitious!

Capecchi decided to continue working on homologous recombination in spite of being turned down by NIH. He generated recipient cell lines that carried a defective neomycin resistance gene (neor) and was able to repair it by introducing a functional neor gene [23]. Correction occurred at a relatively high frequency (in one cell per 1,000 injected cells), making it likely that homologous recombination could be used to manipulate genes of the mammalian genome.

In parallel with Capecchi's work, Oliver Smithies had developed the concept that homologous recombination might be used to repair mutated genes. As early as the 1960s he had already established that an allelic variant of haptoglobin had occurred through recombinatorial events [33]. Later on, he cloned human fetal globin genes and concluded that Gγ and Aγ had arisen through a process involving homologous recombination [34]. He devised a stepwise selection procedure for recovering targeted cells carrying modified genes. The strategy was successful and he reported in a landmark paper in the September 19, 1985 issue of Nature the successful integration by homologous recombination of a plasmid into the chromosomal β-globin gene of human erythroleukaemia cells [24].

By 1985, Capecchi had shown that homologous recombination occcurs with high frequency in mammalian cells and Smithies had used homologous recombination to insert a plasmid DNA sequence into a chromosomal gene of a human cell. However, all this work was carried out in cell culture. Could homologous recombination be used to target genes in the germline and obtain strains of genetically modified animals? Both Capecchi and Smithies had heard of Martin Evans' ES cells and decided to give them a try. With the help of Evans, they both set up ES cell culture for use in homologous recombination experiments.

Smithies first used homologous recombination to correct a mutant HPRT gene in cultured ES cells [35]. For this purpose, an ES cell line was used that carried a deletion mutation; this cell line had previously been used for production of mutant mice. The HPRT gene was repaired with a plasmid carrying the missing promoter and first 2 exons and Smithies showed that treated cells survived and grew in HAT selection medium, which requires HPRT enzyme activity. Smithies and his co-authors concluded that "This modification of a chosen gene in pluripotent ES cells demonstrates the feasibility of this route to manipulate mammalian genomes in predetermined ways" [35].

Capecchi's team also chose the HPRT gene for their early studies. Standard methods were available for selectively growing cells with functional HPRT enzymes and had already been used for several years for selection of mutants, hybridoma cells in monoclonal antibody production etc. Thomas and Capecchi [36] introduced a neomycin resistance gene into an exon of the HPRT gene in ES cells and showed that clones of transfected cells had lost HPRT but gained neoR activity. They concluded in their Cell paper that "It is hoped that this combination of using ES cells as the recipient cell line and site-specific mutagenesis achieved by gene targeting will provide the means for generating mice of any desired genotype." [36] They continued by outlining an experimental strategy:

"An advantage of this scenario is that the first generation chimera will usually be heterozygous for the targeted mutation and that subsequent breeding can be used to generate the homozygous animal. Thus, only one of the two loci need be inactivated, and recessive lethals can be maintained as heterozygotes. If successful, this technology will be used in the future to dissect the developmental pathway of the mouse as well as to generate mouse models for human disease." [36]

This vision has become reality and is now a cornerstone of experimental medicine.

It was important to proceed from the "model gene" HPRT to a general strategy that would allow targeting of genes whose function cannot be selected for in cell culture. Thomas and Capecchi [36] had pointed out that the frequency of homologous recombination vs random integration was 1/1,000, which should be high enough to permit targeting of non-selectable genes as well. This observation prompted work to develop the methods needed for such approaches. The following year, Capecchi's positive-negative selection strategy for enriching ES cells containing a targeted disruption of any transfected gene was presented in Nature [37] (Fig 2). A neomycin resistance element (neoR) is introduced into an exon of the replacement vector, which also has a thymidine kinase (HSV-tk) element at its end. Homologous recombination of the targeted gene will result in neoR expression but the tk element will be lost since it was outside of the recombining DNA sequences. In contrast, random integration of the replacement vector will introduce tk as well as neoR into the gene. This strategy was successfully used to disrupt the int-2 gene, which is a member of the fibroblast growth factor (FGF) family [37].

All the components were now in place for producing gene-targeted mouse strains: the development of ES cell culture, the demonstration that gene modification in such cells can be transmitted to the germline and registered in the offspring, the observation that homologous recombination occurs with high frequency in the mammalian genome, the application of gene transfer methods to ES cells, and the invention of strategies for enriching transfected cells. Several laboratories joined the race and 1989 saw the birth of several different knockout mice [38-41]. Fig 3 shows the molecular evidence for correction of the mutant HPRT gene in the germline by Smithies and co-workers [39].

After the establishment of gene targeting technology, several important modifications and developments, in several laboratories, have extended its use in significant ways. An ingenious development of gene targeting has been made by introducing recognition sites for the enzyme Cre recombinase, so-called loxP sites, into existing genes. When mice carrying such "floxed" genes are mated with transgenic mice expressing Cre recombinase, the target gene of the offspring is modified through Cre action [42-44]. Another site-specific recombinase, Flp, is also frequently used to construct conditional targeting of genes in mice [45]. The activity of the Cre, or Flp, gene can be controlled by placing it under a suitable promoter to achieve tissue-specific gene targeting [46]. Expression of Cre and hence targeting of the floxed gene can be restricted to e.g. T cells (lck promoter), cardiac muscle (cardiac myosin promoter), neurons (enolase promoter) or epithelia (cytokeratin promoter).

Cre expression can also be controlled temporally, by introducing an element into the promoter which requires a ligand such as a drug for induction [47]. Tetracyclin, type I-interferon and tamoxifen (which binds to an estrogen receptor-binding element) have all been used to obtain drug-inducible promoters. In this way, a desired gene can be targeted by administrating the drug. By introducing a tamoxifen site into a tissue-specific promoter, gene targeting can be obtained selectively in a certain tissue when the mouse is treated with the drug.

Cre-lox technology can also be used to replace an existing gene with another one [48]. Such "knock-in" has been used e.g. to replace murine immunoglobulin or MHC genes with human ones in order to "humanize" the mouse with regard to immune function. It has also been used to replace an allele with another one, the latter for instance being an allele suspected to cause disease.

Gene targeting has transformed scientific medicine by permitting experimental testing of hypotheses regarding the function of specific genes. Prior to gene targeting, our understanding of the role of genes in higher organisms was deduced from observations of spontaneous mutations in patients and experimental animals, linkage and association studies, administration of gene products to animals and, to some extent, from cell culture experiments. However, cell culture is not helpful for understanding functions and diseases involving multicellular, integrative responses. Insights into organ systems such as the nervous system,the cardiovascular system, and the immune system, were fragmentary at best, as was knowledge of mammalian development. As the cardiovascular physiologist Heimo Ehmke put it, "cells don't have blood pressure" [49]. The possibility of observing the effects on the intact organism of destroying a candidate gene transformed these areas of research. For instance, cardiovascular physiologists switched from rats to mice as models, downscaling their instruments and techniques in order to study the genetic regulation of hemodynamics. A new era of genetic physiology was born.

The genomes of man and mouse contain about 22,400 genes. Several thousand of them have already been investigated by gene targeting. Collectively, these studies have provided a wealth of information about gene function in development and disease. They have helped fuse mechanistic molecular biology with integrative life sciences such as embryology, physiology and immunology and have prompted new technical developments in physiological sciences. For medicine, the modeling of human diseases by gene targeting in mice has been particularly informative.

At this stage, it may be helpful to recapitulate the criteria first proposed by Claude Bernard for the scientific method in medicine [50]: Medical scientists use observations, hypotheses and deductions to propose explanations, theories, for natural phenomena. Predictions from these theories are tested by experiment. Any theory which is cogent enough to make predictions can be tested reproducibly in this way. Therefore, the scientific method is essentially a cautious means of building a supportable, evidence-based understandingof our natural world. Experiments are crucial in this process.

Prior to gene targeting, genetic medicine lacked the means for experimental testing. If we make an analogy with Robert Koch's approach to infectious diseases [51], genetic medicine could apply the first of Koch's postulates (i.e. observe an association between microbe, or in this case, gene or allele, and disease) and with the advent of gene cloning, the second one (isolate the microbe/gene from the diseased individual and establish it in culture), but applying Koch's third postulate (induce the disease by transferring the microbe/gene to a host organism) required gene targeting. By mutating a gene to destroy its function (knock-out) or switching it to a disease-associated allele (knock-in), disease is induced if the hypothesis is correct. Alternative approaches based on genetic epidemiology are currently being developed but currently available methods do not have the precision of hypothesis-based experiments. This digression into scientific theory may suffice to make the point that only by targeting candidate genes did it become possible to formally establish causality between gene and disease. Let us now look at some specific examples of the impact of gene targeting in medicine.

The first area to which experimental geneticists turned their attention after the birth of gene targeting in mammals was monogenic diseases. The Lesch-Nyhan syndrome, a defective nucleotide metabolism caused by a mutation in the HPRT gene, actually served as the model condition during development of the technology, both in Evans' and Smithies' laboratories (see above). One of the reasons for chosing this particular medical condition was because selection conditions for isolating transduced cells were available for HPRT. The first examination of HPRT-/- mice was disappointing since neither neuropathological nor behavioural features of human disease could be observed [21, 39]. This prompted analysis of purine salvage pathways in mice and led to the findings that mice depend largely on adenine phosphoribosyltransferase (APRT) for purine salvage and are therefore not as sensitive to HPRT deficiency as humans. Administration of an APRT inhibitor to HPRT-/- mice induced persistent self-injurious behaviour resembling the clinical features in human disease [52]. This is an illustration of the need for sophisticated analysis of integrative functions when characterising the phenotype of gene-targeted mice.

Cystic fibrosis is one of the most common monogenic disease and was chosen for gene-targeting studies by Smithies and his co-workers [53, 54]. The defective gene had been identified by linkage studies in patient families followed by molecular cloning. It turned out to be a cAMP-activated choride channel and was termed cystic fibrosis transmembrane conductance regulator (CFTR). By knocking out CFTR in mice, a condition was generated that reproduced many features of the human disease. Thus, CFTR-/- homozygotes displayed defective chloride transport in epithelia of airways and intestines, failure to thrive, meconium ileus, and pathological alterations of gastrointestinal glands. These studies were among the first to create a model of a human disease by gene targeting in mice. They have been followed by an avalanche of such knock-out models.

The pathogenesis of inherited heart diseaseshave been explored successfully by gene targeting approaches [55, 56]. For instance, targeting of genes encoding components of the contractile apparatus in cardiomyocytes leads to cardiomyopathy; targeted mutations in connexin proteins of gap junctions cause conduction defects; disrupted genes for transcription factors involved in heart development lead to congenital heart malformations; and targeting of genes controlling energy metabolism causes cardiomyopathy.

Complex diseases involving the action of more than one gene, and in addition, gene-environment interactions, represent a particular challenge for medical research. Inheritance, penetration and interactions are usually poorly understood, it has been difficult to dissect the contribution of an individual genetic factor, and the distinction between causation and correlation has been problematic. In order to prove causation in such a complex system, experiments must permit detection of the effects of changing only a single variable at one time. Gene targeting made such experiments possible and has permitted proof of causation in complex diseases.

Oliver Smithies has been the leader in this development. Together with Nobuyo Maeda, he focused on two important, complex diseases, hypertension and atherosclerosis (reviewed in [57]). Twin studies suggest that genetic factors may account for approx 70% of familial aggregation of essential hypertension. However, at least 10 genes have been shown to alter blood pressure and their gene products appear to interact in complex ways. In spite of the discovery that angiotensinogen (AGT) gene polymorphism is associated with essential hypertension, the genetics of this disease has remained poorly understood [58]. Little is known about the number of genes actually involved in human essential hypertension, their quantitative effect on blood pressure, their mode of transmission, or their interaction with other genes and environmental components.

Smithies suspected that gene dose effects would impact on blood pressure levels and designed a new method for titrating gene dosage by producing mice with one, two or three functional copies of the AGT gene [59]. "Conventional" gene targeting was used to produce the one- and two-copy mice and gap-repair gene targeting to produce mice with three copies of the AGT gene. This resulted in proportionally higher levels of gene products (i.e. plasma angiotensinogen protein) and, importantly, proportionally higher blood pressure with increasing gene copy number. When Smithies et al targeted another important gene for blood pressure regulation, the one coding for the angiotensin-converting enzyme (ACE), no such linear relationship was observed, in spite of the effectiveness of ACE inhibitors in reducing blood pressure. The investigators submitted their data to a computer simulation for complex interacting systems and could propose a model for blood pressure control through the renin-angiotensin system, which has proven to be useful for understanding essential hypertension [60]. It shows that gene dosage, gene expression, and gene product clearance/catabolism must all be considered when evaluating the genetic regulation of blood pressure.

In 1992, Nobuyo Maeda, working in Smithies' department at the University of North Carolina, developed a mouse model of atherosclerosis by targeting the gene for apolipoprotein E (Apoe) [61]. The same gene was targeted independently by investigators at Rockefeller University [62]. The Apoe-/- mouse develops spontaneous atherosclerosis which is remarkably similar to human disease. The following year, Michael Brown and Joseph Goldstein (1985 Nobel Prize for discoveries concerning cholesterol metabolism) and their co-workers targeted the gene for the low density lipoprotein (LDL) receptor (Ldlr) and obtained a mouse that develops atherosclerosis when fed a cholesterol-rich diet [63]. The introduction of the two mouse models with defective Apoe and Ldlr genes have completely changed atherosclerosis research. By crossbreeding them with other gene-targeted mice, it has been possible to deduce the importance of genes regulating inflammation, lipid metabolism, blood pressure and other factors proposed to be involved in atherosclerotic cardiovascular disease [64]. They are also used abundantly in the pharmaceutical industry for development and testing of new drugs against coronary artery disease.

Gene targeting has been exceptionally useful in cancer research. A large number of protooncogenes, tumor suppressor genes, angiogenetic factors etc have been targeted in different tissues in mice to shed light on the induction and spreading of tumours [65]. Gene targeting of tumour suppressor genes have helped clarify their role in the formation of tumours. For instance, mice carrying a targeted p53 gene were predisposed to tumour development [66]. Conditional targeting (using Cre-lox technology) of the adenomatous polyposis coli (APC) gene induces colorectal tumors in mice and APC-targeted mice have become useful models for research on solid tumours [67]. Targeting of genes for endothelial growth factors and proteolytic enzymes have been essential for understanding mechanisms of neoangiogenesis and metastasis of solid tumours and are also used for developing therapeutic strategies to prevent spreading [68].

Contemporary research into most if not all major human diseases involves gene targeting in mice and there are "knockout models" for endocrine, metabolic, neurological, inflammatory and other disorders. Gene-targeted mouse models have also become increasingly important in studies of host defense against pathogens. Indeed, gene targeted mice have become indispensable in virtually all aspects of medical research.

Gene targeting has transformed physiology and medicine. Among the basic biomedical sciences, it is difficult to imagine contemporary medical research without the use of gene targeted models. The ability to generate predictable designer mutations in mouse genes has led to penetrating new insights into development, immunology, neurobiology, physiology, and metabolism. It has also allowed disease models of human pathologies to be generated in a tractable mammalian system and consequently enabled experimental dissection of disease states, identification of new therapy targets and the development of test systems for pharmacology. Finally, it is obvious that the development, in the future, of novel therapies to correct genetic defects in man will build on the experience of gene modification in mice that is based on the discoveries made by Mario Capecchi, Martin Evans and Oliver Smithies.

Gran K Hansson Professor of cardiovascular research at Karolinska Institutet Member of the Nobel Committee for Physiology or Medicine

To cite this page MLA style: "The 2007 Nobel Prize in Physiology or Medicine - Advanced Information". Nobelprize.org. Nobel Media AB 2014. Web. 3 Jun 2017. <http://www.nobelprize.org/nobel_prizes/medicine/laureates/2007/advanced.html>

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Carleton College to hold its 143rd Commencement Ceremony June 10 – Carleton College News

Carleton College will award the Bachelor of Arts degree to the 505 graduating members of the Class of 2017 onSaturday,June 10, in a ceremony beginning at 9:30 a.m. on the lawn west of Hulings Hall on the Carleton campus. A celebratory picnic on the Bald Spot will follow. In the event of severe weather, commencement will be held indoors at the Recreation Center. Seating is available to accommodate all guests, whether outdoors or indoors, and no tickets are required. The ceremony will also be broadcasted live online (https://apps.carleton.edu/events/commencement/livestream/).

Following President Steve Poskanzers opening remarks,Reina Desrouleaux '17, chemistry major from Silver Spring,Maryland (whose speech is titled [insert meaningful life experience here]) and Eli Ruffer '17, chemistry major from Highland Park, Illinois (whose speech is titled Tyler, the Prospective Student)will address the Class of 2017, families and friends, and faculty. In additionally, Carleton College will confer an honorary doctorate upon Kathy L. Hudson 82, former Deputy Director for Science, Outreach, and Policy at the National Institutes of Health, who will briefly address the class.

The highest honor given by the College, conferred honoris causafor the sake of honorthis years honorary degree recipient is Dr. Kathy L. Hudson, former Deputy Director for Science, Outreach, and Policy at the National Institutes of Health (NIH).

Throughout her distinguished career, Hudson has served the public by ensuring that advances in genomics and other rapidly moving areas of medical research are paired with wise and effective public policies.

After earning a B.A. in biology from Carleton College and a M.S. in microbiology from the University of Chicago, Hudson obtained her Ph.D. in molecular biology from the University of California, Berkeley. Although she trained for a career in research, Hudson discovered that her real passion was science policy. As an American Association for the Advancement of Science (AAAS) Fellow in Washington DC, she worked for the U.S. House of Representatives and then the Congressional Office of Technology Assessment.

After a stint in the office of the Assistant Secretary for Health at the Department of Health and Human Services, Hudson joined the National Human Genome Research Institute (NHGRI) as assistant director. While there she made a compelling case to scientists, public policy experts, and lawmakers about the need for federal legislation to guard against genetic discrimination. She also helped to broker an historic agreement between the public and private human genome projects, which was announced by President Bill Clinton in the White House in 2000.

In 2002, Hudson left NHGRI to found and direct the Genetics and Public Policy Center at Johns Hopkins University. She became a leader in educating and advising about science and policy issues in genetics. Also at Hopkins, Hudson was an Associate Professor in the Institute of Bioethics and the Institute of Genetic Medicine. It was Hudson who did much of the work to assemble the talented and dedicated team that, in 2008 after years of effort, achieved passage of the landmark Genetic Information Nondiscrimination Act.

In 2009, Hudson returned to the National Institutes of Health, becoming the Deputy Director for Science, Outreach, and Policy. In that capacity helped found and launch the National Center for Advancing Translational Sciences. She also had a major hand in the design and launch of three national scientific projects the BRAIN Initiative, the Precision Medicine Initiative, and the Cancer Moonshot. In addition, she led efforts to revise the rules that govern participation of human subjects in research, modernize clinical trial reporting, expand scientific data sharing, and develop appropriate oversight for rapidly moving areas of medical research, including stem cells and gene editing.

On top of her many duties and responsibilities, Hudson made time to serve as a strong and tireless advocate for the role of women in science. She personally mentored a group of young women who are now moving into key leadership roles with a wide range of innovative biomedical research and policy initiatives.

Earlier this year Hudson left government service, and is working as an advisor to companies and research institutes as they forge new directions at the forefront of biomedical research.

For further information, including disability accommodations, contact the Carleton College Office of College Communications at(507) 222-4309or emailkraadt@carleton.edu. The commencement site is located on the Carleton campus between College and Winona Streets in Northfield.

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Carleton College to hold its 143rd Commencement Ceremony June 10 - Carleton College News

Genetic sequencing could influence treatment for nearly 3/4 of advanced cancer patients – Medical Xpress

June 2, 2017

A new analysis finds that nearly three-quarters of 500 patients with advanced cancer could be referred to a potential targeted treatment based on the results of a comprehensive analysis of their tumor's genetic landscape.

The study suggests the value of so-called next generation sequencing, a sophisticated method of evaluating the DNA and RNA of a tumor to help direct treatment.

A report on the first 500 patients with advanced solid tumors to go through the University of Michigan Comprehensive Cancer Center's sequencing program found that 72 percent qualified for a clinical trial based on a genetic marker in their tumor.

While not all of those patients were able to enroll in a trial based on other eligibility factors and trial location, the number who did enroll doubled from approximately 5 percent of patients in 2012 to 11 percent in 2016. Increased trial enrollment occurred as several major national biomarker-based studies opened.

"Availability of biomarker trials is crucial for being able to act on these results. Over time, we became better at matching patients to clinical trials as more of these basket trials opened," says Erin Cobain, M.D., clinical lecturer of hematology/oncology at the University of Michigan Medical School.

Cobain will present these findings at the American Society of Clinical Oncology annual meeting.

The Michigan Oncology Sequencing Center began in 2011, sequencing the DNA and RNA of metastatic cancers and normal tissue to identify alterations that could help drive treatment. About 900 patients with advanced cancer have enrolled to date. The analysis presented at ASCO focuses on the first 500 patients with solid tumors.

Precision medicine in action

Patients with stage 4 cancer undergo a biopsy and provide a blood sample to test their normal DNA. Patients also receive genetic counseling.

Results of the sequencing are discussed by a team of oncologists, genetics specialists, pathologists, bioinformatics specialists and genetic counselors, among others, at a precision medicine tumor board. This group discusses all results and assesses the feasibility of pursuing treatment options based on the genomic findings.

Genetic sequencing involves looking at all of the DNA and RNA expressed within a tumor. Scientists comb through this enormous amount of data to identify anomalies that may prove to be targets for existing approved or experimental therapies.

In addition, the program sequences patients' normal genome. This means it's able to identify hereditary genetic variations - those inherited from a mother or father and potentially passed down to children. Researchers found these hereditary variations in 11 percent of patients, none of which had been previously identified through family history.

"That was a major surprise. That 11 percent of patients had a genetic change that increases cancer risk is much higher than we would expect. This has significant impact not only on the patients, but on their families, who may also carry a genetic susceptibility to cancer," Cobain says.

A more comprehensive approach

Mi-ONCOSEQ, which is run as a research study, requires a fresh biopsy, where many commercial sequencing tools can use frozen tissue samples. However, those tests analyze only a limited panel of genes. The goal with Mi-ONCOSEQ was to obtain a large enough sample so that researchers could perform extensive sequencing of both DNA and RNA.

The more-thorough analysis, which covers at least 1,700 genes, meant that many anomalies were identified that would not have been found on panel-based tests that typically cover about 350 genes. Because Mi-ONCOSEQ is run as a research study, patients did not pay for sequencing.

Cobain cites an example of a patient with cholangiocarcinoma, a cancer of the bile duct. Sequencing revealed a novel gene fusion that would not have been identified through panel-based tests. The patient was able to enroll on a clinical trial targeting the gene fusion and had an excellent response to that therapy.

"This would not have been found by a commercial assay," Cobain says. "Sequencing is beginning to have a real impact on treatment recommendations. It's important to consider this testing early in the patient's clinical course in order to improve our ability to act on the results and impact the patient's course."

Explore further: Genetic alterations more common in tumors of older patients with metastatic breast cancer

More information: Reference: ASCO Annual Meeting, June 2-6, 2017, abstract 101

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Pacelli’s Krusa awarded Chemistry Teacher of the Year Award – Portage County Gazette

Joyce Krusa (center) accompanied by her daughter, Alliey, and husband, Brian receives the Chemistry Teacher of the Year Award by the Central Wisconsin Section of the American Chemical Society. (Contributed photo)

Pacelli Catholic High School teacher Joyce Krusa was recently awarded the Chemistry Teacher of the Year Award by the Central Wisconsin Section of the American Chemical Society, a regional group of chemistry educators and professionals covering the central and northcentral Wisconsin region.

This year, (the) ACS-Central Wisconsin Chapter has chosen an outstanding high school chemistry teacher that (is) deserving of special recognition, said Gary Shulfer, chair of ACS-Central Wisconsin Chapter and University of Wisconsin-Stevens Point chemistry professor.

Devoting more than 15 years of her professional life to science education, Krusa possesses great leadership and has developed strong relationships with her students. As a result, more than 30 percent of her students pursue undergraduate degrees in science-related fields.

Krusa has taken on a big role in developing STEM (Science, technology, engineering and mathematics) and Project Lead the Way (PLTW) curriculum at Pacelli implementing both engineering and biomedical engineering tracks. She works to create learning opportunities for students that are rigorous and relevant.

Currently, one of her students is finishing a two-year STEM capstone internship with a local manufacturer, one of very few internships of this type for high school students in the state of Wisconsin.

I was nominated by a former student, said Krusa. The idea that a student of mine thought this much to nominate me is very humbling.

PCHS principal Larry Theiss also submitted a recommendation letter on Krusas behalf.

She constantly strives to create projects and lessons that draw they students into the learning making it fun, engaging, and interesting, said Theiss in his letter. She challenges them to expand their understanding in order to help them achieve higher levels of understanding and critical thinking.

Krusa was honored at the annual ACS-Central Wisconsin Chapter awards banquet on May 11 at Draganettis Ristorante in Eau Claire.

For my peers to recognize me for this award is one of the highlights of my teaching career, said Krusa.

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Pacelli's Krusa awarded Chemistry Teacher of the Year Award - Portage County Gazette

Bonds have changed, but chemistry among Broncos linebackers still exists – Mile High Sports

It takes a special formula to win a Super Bowl.

Balls have to bounce a certain way, difficult decisions need to be made, and sometimes it boils down to plain luck.

The Broncos discovered that their team chemistry, especially on the defensive side of the ball, was a main component in the formula that led them to their Super Bowl 50 victory in 2015.

As with any Super Bowl champion, key components of the Super Bowl team were scavenged by other teams looking for a piece of the Super Bowl pie.When linebacker Danny Trevathan was plucked by the Chicago Bears, Todd Davis was tasked with filling the voidTrevathan left in the Broncos linebacking corps.

While Davis had a fine first season as a starter, finishing with 97 tackles and a forced fumble, Brandon Marshall, who started alongside Trevathan at inside linebacker in Super Bowl 50, did admit that it was different not having Trevathan around.

Its very underrated, Marshall said of the importance of adjusting to his new teammates. When I was in there with Danny sometimes, we should have communicated when we didnt. But it was almost like I knew what he was thinking and he knew what I was thinking.

As the duo of Marshall and Davis entertheirsecond season together, both know that the chemistry is there.

I think we have it down, Marshall said of his connection with Davis. Its just a different guy; thats just what it is. Youre not going to play the same with everybody. I think what Todd and I have going on is great. We work hard, we do extra stuff. We talk ball on the sidelines. Were going to be just fine.

Just playing together, I think we have a chemistry like nobody else, Davis said following Thursdays OTA practice. We read off of each other really well. Just the last year has given us more time to grow with each other.

The Broncos linebackers can hardly be considered one of their main problems in 2016, but another year together can only make them stronger. The transition from Trevathan to Davis wasnt one that threw Marshall off of his game, but one that didnt go unnoticed either.

Im thinking that no matter who is in there, Ill be fine, Marshall said after Thursdays OTA practice. But, I think its a transition period because you have different chemistry with different people. Me and Danny [Trevathan], I knew Danny for a little bit so the type of chemistry that we had, we developed it kind of quick. Todd [Davis] is just a different player mentally than Danny, so we had to get on the same page.

The core of the Broncos defense will enter the 2017 season relatively unchanged, which will only help the bond between Marshall and Davis grow. While the bond may differ from the one that Marshall shared with Trevathan, Marshall knows that something special is brewing between the two.

I think were going to play beautifully together this year, Marshall said. Its going to be beautiful.

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Bonds have changed, but chemistry among Broncos linebackers still exists - Mile High Sports

Does the Giants’ lack of in-house Latin players impact clubhouse … – Yahoo Sports

Andrew Baggarly of the Mercury News has a story about the San Francisco Giants minor league woes. All of their affiliates are in last place at the moment and few if any of their prospects are advancing as quickly as the club would like to see.

One of the issues Baggarly identifies is the Giants poor track record in developing international talent, noting that no Giants player from a Latin American country who was originally signed by the Giants has played for the big league club this year (one,Reyes Moronta, spent one day on the 25-man roster but did not play). All of the others were acquired via trade or free agency.

Baggarly suggests that the relatively small number of Latin players on the Giants roster, and the fact that none of them came up through the Giants system together, may be impacting the Giants clubhouse. Here he calls back to a Johnny Cueto quote from April:

When I was with Kansas City, it was a team, I think, it was a very happy bunch because we had a lot of players from the Dominican, Cueto said through Spanish interpreter Erwin Higueros in April. The same with Cincinnati. But here, its different. As Latins, we like to get together kind of loud, and be a happy bunch. But here, you look around and everyone is on their own, just sitting at their locker, very quiet, just by themselves. Thats just how they are.

I had missed that quote when it first came up in April. It seems tangential at best to Baggarlys thesis about the Giants developmental issues, but I find it interesting to consider all the same in light of the Giants sitting in last place.

On one level, obviously, it comes off as a negative comment. After all, when a player says that one club he played for felt like a team and that current club feels like something different, that has to be taken as a negative, yes? To Cueto, the Giants, dont feel like a team and thats never something good to hear from a ballplayer.

Still, its worth noting that the quote came from a couple of months ago. At the time Cueto said that, the season was young, the Giants were expected to be pretty good and, as such, it could be taken as a mostly neutral observation, not some comment about why the Giants arent playing well. Indeed, if the Giants were in first place now it could be seen, perhaps, as almost a compliment. The Giants are a serious, business-minded bunch who let their playing do the talking!

But here it is, reappearing now, when the Giants stink, both at the big league level and in the minors, and it is clearly being offered as a potential reason for why they stink. A lack of Latin players perhaps harming their on-field talent, sure, but also harming clubhouse chemistry and making AT&T Park a dreary place to be.

I dont have a view about the Giants talent base or their clubhouse chemistry as I was only in it for, like, an hour back in Scottsdale in March. But I do find it interesting how player comments can, depending on what is going on with the club on the field at any given time, be seen in many different ways. And how, as always, the conversation about clubhouse chemistry is so often a backwards-looking thing.

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Does the Giants' lack of in-house Latin players impact clubhouse ... - Yahoo Sports

Sweet Briar College | News | Sweet Briar launches Explore … – SBC News

June 2, 2017 | Janika Carey

High school women interested in STEM can now explore a whole range of subjects at Sweet Briar College. Chemistry is joining engineering, environmental science and math, with the first Explore Chemistry Weekend for High School Girls scheduled for Sept. 22 and 23.

The weekend is open to high school girls in their sophomore, junior and senior years. Participants will receive an introduction to chemistry through one of two hands-on projects with a Sweet Briar chemistry professor. Working in teams, they will collect samples from the campus environment, extract the chemical components and analyze them using state-of-the-art instrumentation.

This will be a great way for high school students to gain a firsthand glimpse of what it is chemists actually do, says Abraham Yousef, associate professor of chemistry and chair of the department. We have access to acres of forested land with an abundance of plant and animal life, and we can show students how chemists identify and quantify some of the chemical substances in our environment.

The weekend kicks off with an optional campus tour at 4 p.m. Friday, Sept. 22, followed by dinner and a project introduction. After staying the night in campus housing with student mentors, participants will spend Saturday working in teams on a research project of their choice. The day wraps at 6 p.m. with a project exhibition and dinner at the Colleges tranquil boathouse.

The $35 fee includesroom and board, snacks, supplies and a T-shirt. Participants are encouraged to register by Sept. 1 for highest priority. Space is limited to 16 students, and only fully paid event registrations reserve a students spot.

For more information, contact Yousef at (434) 381-6197 or ayousef@sbc.edu. To register, click here.

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Sweet Briar College | News | Sweet Briar launches Explore ... - SBC News

Biotechnology: An Overview – Good Herald

Application of technologies on biological systems, dead organisms and their derivatives and food and medicine can be broadly defined as biotechnology. It never had a particular definition since its applications and implementations on various other areas of science are enormous. From manipulating crops and plants to increase the yield to transfer of genes from one organism to the other biotechnology encompasses almost all the living and non-living entities on earth. With the drastic improvement in various machineries and equipments used in the processing of biological materials and the examining of microscopic organisms biotechnology has come a far way since the traditional days of fermentation like techniques, which also is a part of biotechnology.

In the earlier times, biotechnologys application was limited to agriculture and in the production of fermented food products but with the discovery of newer and much complicated data comprising of the most smallest of structures that are measured in microns biotechnology has been found fruitful in the production of many useful products that improves the quality of life of mankind. The categories of science like genetic engineering, animal cell culture, plant cell culture, microbiology, molecular biology, cytogenetics, cryopreservation, bioprocessing, biochemistry, cell biology, embryology, immunology and bioinformatics all these come under biotechnology.

Biotechnology has wide prospects when it comes to environmental science as well. It is used to recycle and retreat the wastes that are left behind at contaminated sites by various industries. This process is termed as bioremediation. Many experiments concerning DNA and RNA and other molecular structures in the human body also comprise of a wide area of practical biotechnology. Mapping of the genes has risen a lot of interest in this decade and with the completion of the Human Genome Project newer prospects for biotechnology has paved way.

Biotechnology has found promising applications in pharmaceutical manufacturing as well. From the production of antibiotics to the purification and separation processes for biomolecules. Biotechnology has its presence felt almost everywhere. Biotechnology plays a massive role in the field of medicine as well. As more and more genetic diseases are brought into picture it is through biotechnology that we try and find ways and means of manipulating the genes and discovering the cure for the disease.

Also with the depleting natural resources for fuel and the environmental effects caused by the use of the conventional fuels can be curbed to a certain extent with the proper manifestation of biotechnology in the production of biorenewable fuel from crops. Biotechnology can speed the production of ethanol and methane for natural gas from these crops.

Overall, biotechnology improves the quality of life and brings in new horizons of modern techniques in various aspects of human life.

The author of this article has great knowledge on Biotechnology. He has written many articles on Chromatography with the great knowledge. He has a great deal of knowledge in Pharmaceutical information as well.

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Biotechnology: An Overview - Good Herald

Lack of collaboration hampers biotechnology effectiveness Experts – TheNewsGuru

Biotechnology experts say lack of collaboration in the face of limited resources will hamper the efficiency and effectiveness of the use and application of biotechnology in Nigeria.

The experts told the News Agency of Nigeria in separate interviews on Friday in Abuja that only synergy would help the nation achieve food security.

Dr Rufus Ebegba, the Director-General, National Biosafety Management Agency (NBMA), said that modern biotechnology was becoming increasingly important in addressing emerging food security, social and economic challenges.

With its perceived and real unintended consequences, regulatory agencies and stakeholders must unite with a sense of purpose, vision, mission and determination to ensure that our nation reap the benefits of biotechnology.

We have an excellent working relationship with, and Memorandums of Understanding with agencies like NAFDAC, SON, the Nigerian Customs Services, NABDA, ARCN, Ministries of Environment, Health and others.

We have been organising workshops and involved in seminars that encourages effective collaboration with other regulatory Ministries, Departments and Agencies (MDAs) on the use and application of biotechnology.

This is part of our effort to keep Nigerians abreast of laid down internationally accepted procedures for verification of GM foods and Feed Safety; and determine the future activities to build necessary capacity in the Nigeria biosafety regulatory system, he said.

He said that the agency had put in place world class measures, equipment and international arrangements that ensured the practice of modern biotechnology in Nigeria was one of the safest in the world.

Prof. Benjamin Ubi, the President, Biotechnology Society of Nigeria (BSN), said collaboration in the adoption of biotechnology would facilitate sustainable agricultural production in the country.

He said that the adoption of biotechnology applications was the panacea to the current food challenges facing the country.

Biotechnology, including genetic engineering and production of Genetically Modified Organisms (GMOs), provides powerful tools for the sustainable development of agriculture, fishery and forestry, as well as meeting the food needs of the population.

GMOs currently account for about 16 per cent of the worlds crops, particularly crops like soybean, maize, cotton and canola, and there are indications that the growing trend will continue.

So, we must eat what we grow and grow what we eat. This means we ought to produce more and agricultural biotechnology is a tool for achieving this, he said.

Ubi also pledged the support of the BSN for the efforts of National Biosafety Management Agency (NBMA) to harness the potential of modern biotechnology.

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Lack of collaboration hampers biotechnology effectiveness Experts - TheNewsGuru