Holy hybrids Batman! Caribbean fruit bat is a mash-up of three species | Not Exactly Rocket Science

Hybrid_fruit_bat

Most mammals can trace their origins to a single ancestral species. But in the Caribbean islands of the Lesser Antilles, there is a fruit bat with a far more complex family tree. Artibeus schwartzi’s genome is a hybrid mish-mash of DNA inherited from no less than three separate ancestors. One of these is probably extinct and the other two of which still live on the same island chain. It’s a fusion bat, a sort of fuzzy, winged spork.

The ancestry of A.schwartzi has puzzled scientists for almost three decades, and the idea that it’s a hybrid has been mooted before. Peter Larsen from Texas Tech University confirmed the bat’s unique ancestry by sequencing DNA from 237 individuals belonging to the seven fruit bat species of the Lesser Antilles. He found that A.schwartzi’s main genome is a cross between those of two other fruit bats, A. jamaicensis and A. planirostris, with a tiny minority of sequences that don’t match either genome.

Complicating matters, animal cells also have a separate smaller genome, housed in energy-providing structures called mitochondria. But A.schwartzi’s mitochondrial genome doesn’t resemble that of either of the two species that gave rise to it. These accessory genes must have come from yet another source – a third species of fruit bat that has either since gone extinct or that hasn’t been discovered yet.

A. jamaicensis and A.planirostris must have first hybridised fairly recently, for their ranges only overlapped around 30,000 years ago. Nonetheless, today, A.schwartzi is a distinct species in its own right. It has a stable population that can sustain itself without the need for the two ancestral species to continuously mate with each other.

Larsen thinks that its success stems from events that took place after the last Ice Age. Rising sea levels severely isolated the islands that it now lives on, particularly St Vincent. This separated the new hybrid from its parental species, cutting off the flow of genes that would otherwise dilute this unique lineage. Today, A.schwartzi is St Vincent’s dominant bat.

A.schwartzi is also a perfect example of a phenomenon that’s often seen in hybrids, called ‘transgressive segregation’. You might think that a hybrid would blend the features of its parents, leading to a body that’s half-way between the two. But not always – hybrids often do the opposite, developing extreme and overstated traits well beyond the natural variation of their parents. There are many possible explanations for this, including a clash between genes from the two parents or malfunctions in the way the hybrid develops. Either way, A.schwartzi is living proof of the effect – its skull is much bigger than those of either A.jamaicensis or A.planirostris, which are both roughly the same size.

A.schwartzi’s three-way chimeric genome is a rare find indeed. Some animal hybrids go on to establish new species, but such examples are rare, especially among mammals. Some scientists have suggested that the red wolf is a hybrid of the gray wolf and the coyote, but that’s been disputed of late. A couple of monkeys – the stump-tailed macaque and the kipunji – might also be hybrids, but the evidence for this is still uncertain. A.schwartzi is the clearest case study yet that hybridisation can give rise to new species of mammals.

Reference: PNAS http://dx.doi.org/10.1073/pnas.1000133107

Photo by Tobusaru; depicts A.jamaicensis

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Are Only Humans Good Samaritans? | The Intersection

This is a guest post from Vanessa Woods, author of the new book, Bonobo Handshake. Vanessa is a Research Scientist in Evolutionary Anthropology at Duke University and studies the cognition of chimpanzees and bonobos in Congo. The following is a modified excerpt from Bonobo Handshake. In 1988, a crane operator called Joe Honner was digging out telegraph poles on Darrell Tree’s farm in South Australia. Joe’s three-year-old son was sitting with him in the cabin while Joe maneuvered the crane. Suddenly, the crane swung into live telegraph wires. Over nineteen thousand volts of electricity shot through the broken wires into the crane, which, being made of metal, was a superb conductor. Joe jumped clear, but his son was stuck in the cabin. Joe rushed forward to get his son, but he was held back by the farmer, Darrell. The little boy was fine, Darrell said, as long as he didn’t move. The electricity wound around the crane, creating a perfect circuit, but the leather interior of the cabin was untouched. The boy was frightened and started to cry. As Darrell turned to get a rope to rescue him, Joe rushed forward. As soon as he touched the crane, he tapped into the circuit ...


The mother of all spiders | Cosmic Variance

mamanLouise Bourgeois died yesterday. Perhaps at that very moment I was in the garden of the Leeum museum in Seoul being humbled by her sculpture, Maman. I had previously run into Maman at the Tate about a decade ago. She’s not someone you easily forget. At first all you notice is the immense, menacing, and tremendously unsettling spider. Then you notice that there’s a smaller spider nearby, perhaps a child. And then, much later, you notice that the larger spider has a sac at her belly, filled with eggs. She’s a mother (hence her name, which is french for the same). But this is not your canonical nurturing, soothing, swaddling mother figure.

The Leeum museum is outstanding: an oasis in the heart of Seoul. The museum is split into 3 buildings, each distinct and marvelous (both architecturally, and for their contents). One wing consists entirely of ancient art, with a beautiful collection of celadon (coming from someone that has always had trouble appreciating old pots and jars). One wing is an interactive space, encouraging you to be creative in various clever ways (and with lots to entertain children, who have no doubt suffered from hours of museum-going). The third wing is one of the most impressive small collections of contemporary art I have ever seen, including pieces by Warhol, Close, and a whole alcove devoted to Barney (with Cremaster 3 running on a loop). My favorites by far were two beautiful pieces by Richter: a photo-painting of two lit candles and a gorgeous abstract. As you leave the museum you wander into the garden, and confront the 3-story high mother in all her glory. There is something primal about the encounter, especially as the vast metropolis of Seoul stretches out in the distance below.

Although Bourgeois is now gone, her spiders will no doubt haunt generations to come.


Watching Falcons

What will you say if SpaceX's test rocket fails?, Alan Stern, The Space Review

"Why is the Falcon 9 crucial? In part this is because NASA is relying on it to help ship equipment and supplies to keep our $100-billion space station operable and functioning after the Space Shuttle is retired. It is also crucial because its lower price is critical to NASA's science program. And, in part, it is crucial because the Falcon 9 has become a proxy for the success of the commercial space flight industry."

Preparations for First Falcon 9 Test Launch, SpaceX

"Friday 4 June 2010: Launch Window Opens: 11:00 AM Eastern / 8:00 AM Pacific / 1500 UTC, Launch window lasts 4 hours. SpaceX has also reserved a second launch day on Saturday 5 June, with the same hours As always, weather will play a significant role in our overall launch schedule. The weather experts at the Cape are giving us a 40% chance of "no go" conditions for both days of our window, citing the potential for cumulus clouds and anvil clouds from thunderstorms."

Exploring The Outer Solar System With Humans

Human Missions Throughout the Outer Solar System: Requirements and Implementations, APL

"Distance scales and mission times set the top-level engineering requirements for in situ space exploration. To date, the implementation of various planetary gravity assists and long-term mission operations has made for a better cost-trade than technology development to decrease flight times. Similarly, crewed missions to date have not had mission time limits per se as drivers to implementation. However, unconstrained cruise times to the outer solar system are not acceptable for either robotic sample returns or human crews. Galactic cosmic ray fluxes likely provide a human limit for total mission times of ~5 years, and more restrictive limits may be driven by lack of gravity. We consider the implications for taking humans to the Neptune system and back, and, using this example, we deduce the minimum-cost path to realizing human exploration of the entire solar system by 2100."

PeTA’s 30 Seconds With Charlie

Protester Takes Over Microphone, Disrupts Conference as NASA Official Takes The Stage, PeTA

"A PETA supporter took the stage and microphone this weekend just before a speech by NASA Administrator Charles Bolden at the National Space Society's International Space Development Conference. As Bolden looked on, the protester asked that NASA halt plans to fund a cruel and wasteful radiation experiment on monkeys. She spoke uninterrupted by the crowd for several minutes and received a few cheers from the audience before being escorted off the stage."

Keith's note: Advice to PeTA: if you want to get the media's attention, then going to lovefests among true believers such as ISDC - which never gets mainstream media coverage - is a waste of your time. Indeed, people at the event tell me that the next day attendees staged a mock demonstration making fun of PeTA.

Lunar Boulders ala 1966 and 2010

More Boulders As Seen By Lunar Orbiter 2

"This high resolution image, subframe 2128_H2, was taken by Lunar Orbiter 2 on 22 November 1966 at 20:18:27 GMT. Two areas containing craters filled with boulders have been highlighted. Enlarged versions of these locations are shown below. With a resolution of approximately 1 meter/pixel, the smallest boulders visible are several meters across."

Live Webcams On Devon Island

Live Webcams On Devon Island

"There are several webcams currently in operation on Devon Island in Support of the Arthur Clarke Mars Greenhouse located at the HMP Research Station. The greenhouse was installed on Devon Island in the summer of 2002. These webcams update once a day, conditions permitting, through the greenhouse's autonomous systems using an MSAT satellite connection. One webcam is pointed north at the greenhouse itself. The other webcam is located inside the greenhouse and is pointing south, showing the automated plant growing system."

On Guard

At NASA's Kennedy Space Center in Florida, an adult osprey guards its young in a nest built on a platform in the press site parking lot, backdropped by the 209-foot by 110-foot American flag painted on the side of the Vehicle Assembly Building. The Merritt Island National Wildlife Refuge coexists with Kennedy Space Center and provides a habitat for 330 species of birds, including the osprey, and a variety of other wildlife. Kennedy's press site is located at the turn basin in Launch Complex 39, making it an ideal osprey nesting place.

View my blog's last three great articles...

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Testosterone May Make Women Less Trusting

(HealthDay News) -- It turns out that testosterone might be responsible for more than masculinity and Hollywood action movies: A new study suggests that women who get doses of the hormone are less trusting of strangers, a possible sign that testosterone boosts levels of caution.

The research doesn't prove a direct connection between testosterone, which is found in both sexes. But it does appear to indicate that the hormone helps reduce trust in women and, "in our opinion, protects them from harm," said study co-author Jack van Honk, a psychologist at Utrecht University in the Netherlands. Read more...



Youtharia for Anti-Aging & Longevity

Narcotic treatment contracts and the state of the evidence

Opium derivatives—and later, synthetic opioids—have probably been used for millennia for the relief of pain. Given human biology, they’ve probably been abused for just as long. Opiate use disorders are a daily fact for primary care physicians; the use of these drugs has become more and more common for chronic non-cancer pain. These medications are very effective in the treatment of pain, but come with a lot of undesired effects, not least among them the potential of developing a substance use disorder. They also have considerable street value, with Vicodin selling for $5-$10 per tablet on the illicit market.

But our options for the treatment of pain are not unlimited. Non-steroidal anti-inflammatory medications such as ibuprofen are not safe in all patients, and are not always effective. A multi-modal approach to the treatment of chronic pain can be very helpful, but many patients do not have access to this expensive treatment, and many more simply want instant relief, something which opiates can provide, but with a price.

The abuse of prescription opiates is on the rise. Continuing with Vicodin as an example, 9.3% of American 12th graders reported using Vicodin illicitly in a recent survey. From 1994 to 2002, the mention of hydrocodone—the narcotic in vicodin–in emergency center charts increased 170%. This is a big problem.

So we have two big problems: chronic pain, and narcotic abuse. How can we treat chronic pain and avoid contributing to substance use disorders and drug diversion? One strategy has been the use of so-called narcotic contracts, which we’ve discussed at length. But absent from that discussion was the evidence.

Before we look at this evidence, we must re-examine our reasons for using these contracts. In my own practice, we generally use them to protect ourselves from becoming involuntary drug dealers, and to prevent patients from abusing the narcotics we prescribe. So how are we doing with that?
I can’t answer the first question, but the second was subjected to a systematic review published in the current issue of Annals of Internal Medicine. One of the primary findings of this review was that this question has not been well-studied. The few studies that are out there do not measure some of the most important end-points, such as abuse, dependence, overdose, and death. They also don’t focus on primary care offices, the setting in which these drugs are often prescribed. The limited data available point toward a reduction in narcotic misuse with the use of treatment contracts. They conclude:

Our systematic review reveals that weak evidence supports the use of opioid treatment agreements and urine drug testing to reduce opioid misuse, despite the theoretical benefits of these strategies. This lack of evidence may explain in part why they have not been widely adopted in primary care.

I’m not as optimistic as the authors that it is the lack of evidence driving practice here. Leaving that aside, they make some interesting points regarding plausibility, attitudes, and the use of evidence. With regard to narcotic treatment contracts and urine drug testing they write:

Even in the absence of strong evidence, several compelling reasons for physicians to consider implementing these strategies exist. First, primary care providers who use opioid treatment agreements report improved satisfaction, comfort, and sense of mastery in managing chronic pain. Second, management strategies that include treatment agreements have been associated with reductions in emergency department visits in observational studies. Third, cross-sectional studies and a case series have demonstrated that urine drug testing is a valuable tool to detect use of nonprescribed drugs and confirm adherence to prescribed medications beyond that identified by patient self-report or impression of the treating physician. Finally, implementing routine urine drug testing may improve the provider-patient relationship and clinic morale, as suggested in a letter to the editor.

This is a clearly written and subtle approach to the use of a plausible but not-yet-proved modality, and is a nice example of one way to approach the dark zones of data in science-based medicine. They give a rationale for pursuing further research (the importance and scale of the problem of narcotic misuse, and the dearth of good evidence for current practices). And they give some plausible reasons why we might continue to use this as-yet unproved modality. But they do not overplay the current state of research, or make hyperbolic conclusions.

Science-based medicine does not always give us clear guidelines to care, but often leaves us with more questions to answer. This is one way to approach a difficult problem with incomplete data.

References

Starrels JL, Becker WC, Alford DP, Kapoor A, Williams AR, & Turner BJ (2010). Systematic review: treatment agreements and urine drug testing to reduce opioid misuse in patients with chronic pain. Annals of internal medicine, 152 (11), 712-20 PMID: 20513829


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An Island Getaway

island artThe Globe and Mail, one of Canada’s largest newspapers recently published an essay written by a life long island owner. The essay chronicals an islands evolution from rustic camping retreat to primitive cabin to full turn-key property. The article is both well written and insightful offering potential island owners a lot to think about when it comes to making their island dreams a reality, and figuring out exactly what that reality looks like. Here is what the author had to say.

My friends used to think I was always bragging about it: “I’m going to my island this weekend.” Island this, island that. But the problem was we didn’t have a cottage. What was I supposed to call it?

The very fact that we didn’t have a cottage was the beauty of it. I loved that it was rustic.

To read the full article visit the Globe and Mail.

We didn’t have plumbing. We didn’t have electricity. We didn’t sleep under a roof. Who needs satellite TV at a cottage? What’s the point of getting away from the city if you’re going to be inside all day

L'Universelle – Front Wheel Drive in '55

Pretty much all we ever see anymore of L'Universelle, the GM concept truck of 1955, is the same color photograph and the same brief one-paragraph description, usually contained within broader articles about GM show cars.

We almost never see any in-depth treatment of L'Universelle,

Snakes: Growing and Shedding

Like most animals, snakes continue growing throughout their lives. Their growth rate is very high during youth and much slower as an adult. And just like most animals, their heads are larger – relative to their bodies – while they are juveniles than when they are adults. Their bodies

iPads at the Launch Pad

Space Shuttles, 5d Mark II's and ipads, oh my!, scottaudette.com

"An Apple WiFi iPad, a Canon 5d Mark II with a WFT-4e II A, a three-year-old linksys broadband router, a first gen REV. A, a Sprint Aircard and some duct tape ... watch out, Macgruber, you've got nothing on us. And what did all of the above give us? A camera that took wicked awesome photos on an iPad out the window of the Reuters trailer at the Kennedy Space Center and all from the comfort of the Hampton Inn in Titusville, Florida. What's the point? My cohorts Joe Skipper, Pierre Ducharme & Michael Berrigan and I have been running a system of cameras at the space center that allows us to get our images back quickly from cameras stationed around the launch pad. This has been fairly successful, but there is always room for improvement."