Hi allarrived here early this morning. The trip from Jackson was interesting. Did you know you can smoke in restaurants here Strange... We took a longer route and came across the causeway. Probably a mistake because Bill is not a fan of driving across any bridge with water underneath and I honestly thought he would have a heart attack. He started to sweat gripping the wheel and smoking. The
Monthly Archives: May 2010
Four weeks to go down under…
The excitement of future trips is heightened by a wee peak at posts from previous travels. I can smell the Beach in Rio and the tea in Sri Lanka but this year there is an air of Winter about our trip. If the sun shines it may be tipped with a hint of snow and a Maori nose rub. Ok we are off to New Zealand via Tokyo with a couple of stop off's in Sydney and Honkers on the way home. Now as long a
The final few days
Back in Efate again at least this time it is not raining WOW it looks so much nicer.As usual we had nothing booked on arriving at airport after trying one place too expensive we ened up at the Nirvana. Great place but empty as usual we were the only guests. This place had a coral beach although the same issue of only being able to swim at high tide. We worked out the last day would be
Focsani days 13
All of my various hosts have been most generous in letting me use their home computers. I have no problem with going to a net cafe and paying to use on but since wifi is so widespread there is virtually no need for them because people have highspeed net at home and tey just bring their laptops when they go out.My first full day in Focsani a drive to a village to drop off Dan's old beatup Dac
Regency Steampunk Sky Pirates
No we don't actually have Regency Steampunk Sky Pirates in Cork... more's the pity. It would have made for a mad experience.This might be my last travel blog entry for some time I believe. I go home on Sunday If I'm inspired I may write on Friday or Saturday but I have a sneaking feeling I will be too busy.So you might be expecting some kind of summingup entry. But I have no idea how to sum
Vakantie
Zo na twee heftige weken heb ik eindelijk vakantie Nog druk bezig met inpakken van al m'n spullen en dan bedoel ik ook echt allesNa de vakantie gelijk naar een nieuw huissie waar ik de sleutels nog niet eens van heb Pfff da's nog meer stress....Maar goed nog drie nachten slapen en dan... vliegen met mijn lief. Onze reis begint op Schiphol via Cairo naar Kuala Lumpur om vervolgens een paar
Kas Adventures
Kas days 23 So Kas is full of cats and dogs not dissimilar to Santorini as mentioned if If could feed them all I would They are not aggressive or in bad condition some are pets and some are strays all living a combined existence in the town square restaurants and bars. They are playful and affectionate and lets be honest in some cases hungry...The Schmackos are a hit for all creatures 'gr
Day 01 The long flight to London via Hong Kong
Today is the start of our holiday with a lot of air travel to look forward to.We commence our day by travelling from Brisbane to Sydney at 9 am to connect to our Virgin Atlantic flight to London via Heathrow leaving at 2.30 pm.The flight through to London was uneventful with both of us managing to get some sleep on the way and we arrived at Heathrow at about 5.10 am Monday about 15 minutes ahead
Thursday in Toronto
Our second full day in Toronto and Rachel Darina and I headed to West Queen West in the west suprisingly of Toronto which is young quirky and funky. It was full of little shops selling expensive designer clothes antique shops tattoo parlours and little cute restaurants. It was quiet because it was a weekday and everyone was at work or school.The weather was and still is great here around
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Stand up for science-based medicine against anti-vaccine fear mongering in Chicago today
As I’ve pointed out numerous times this week, anti-vaccine loons, led Generation Rescue and a “health freedom” group, have organized an anti-vaccine rally in Grant Park in Chicago from 3 PM to 5 PM CDT. Andrew Wakefield himself will be the keynote speaker, and there will even be some very bad music promoting the anti-vaccine message. The rally, with its wonderfully Orwellian title, The American Rally for Personal Rights, will be pure anti-vaccine activism in support of pseudoscience on display.
Those supporting science-based medicine plan, led by Skepchick Elyse Anders, to be there to promote science over the conspiracy theories and fear mongering that the anti-vaccine movement uses to frighten parents out of vaccinating their children. I realize it’s short notice. I realize that you very likely will be outnumbered, given the combination of short notice and the fact that the anti-vaccine zealots have been organizing and promoting this rally for weeks, if not months. Nonetheless, you’ll be doing me a particular solid if you can show up there. Details are here. There are also going to be satellite rallies in New Jersey, Washington, and New York. They look as though they’ll be much smaller; so, as P.Z. Myers points out, even if a couple of people can go it could have an effect.
Oh, and if you see J.B. Handley, Jenny McCarthy (I don’t know if she’ll be there or not but thought I’d mention her anyway), Andrew Wakefield, Kim Stagliano, or any other prominent anti-vaccine loon with whom I’ve tussled from time to time here and elsewhere, please tap him or her on the shoulder, smile broadly, and tell ‘em Dr. Gorski says hi.
Is Organic Food More Healthful?
In 1952 Martin Gardner, who just passed away this week at the age of 95, wrote about organic farming in his book Fads and Fallacies in the Name of Science. He characterized it as a food fad without scientific justification. Now, 58 years later, the science has not changed much at all.
A recent review of the literature of the last 50 years shows that there is no evidence for health benefits from eating an organic diet. The only exception to this was evidence for a lower risk of eczema in children eating organic dairy products. But with so many potential correlations to look for, this can just be noise in the data.
Another important conclusion of this systematic review is the paucity of good research into organic food – they identified only 12 relevant trials. So while there is a lack of evidence for health benefits from eating an organic diet, we do not have enough high-quality studies to say this question has been definitively answered. It is surprising, given the fact that organic food was controversial in the 1950s, that so little good research has been done over the last half-century.
It should be noted that we only recently had any rules in the US regarding the label “organic”. According to the USDA:
The Organic Foods Production Act (OFPA), enacted under Title 21 of the 1990 Farm Bill, served to establish uniform national standards for the production and handling of foods labeled as “organic.”
The definition of organic entirely relates to the method of production, not the final product. It involves three principles. One is sustainable farming that is optimal for the environment. That question is beyond the scope of this medical blog. Many people do advocate organic farming for this reason alone, and many of the principles of sustainable farming are being incorporated more generally into agriculture and animal husbandry.
The second principle is the establishment of an ecosystem, using cover crops, crop rotation, and other methods. Again – I want to set aside the environmental questions and focus on the nutritional claims: Does organic farming result in produce that is more nutritious? There are different ways we can approach this question. One is addressed by the systematic review above: Can we measure a health advantage to eating an organic diet? The answer to that question at the present time is “no.” This could be due to the fact that there is no health benefit, or that any benefit is smaller than the studies currently available could detect. Long term modest health benefits are very difficult to detect with clinical trials, and it is therefore difficult to rule out such benefits, but at present there is no evidence of health benefits from an organic diet.
The second way to approach this question is to evaluate the food products themselves: Are they more nutritious? The most recent systematic review of the evidence concluded:
On the basis of a systematic review of studies of satisfactory quality, there is no evidence of a difference in nutrient quality between organically and conventionally produced foodstuffs. The small differences in nutrient content detected are biologically plausible and mostly relate to differences in production methods.
There is also a recent study concluding that birds prefer seed that is conventionally produced over seed that is organically produced – likely because conventional production methods result in a 10% higher protein content.
The third issue with organic food is what is not in, or on them – pesticides, hormones and antibiotics. Here, again, we can take the same two approaches as with nutrition: Is there any evidence of a difference between organic and conventional produce, and is there evidence for a health benefit? There seems to be a consensus on the first question. There are lower levels of synthetic pesticides in organic produce and lower levels of hormones and antibiotics in organic meat than in conventionally grown equivalents. But is this safer for health? The review cited above is also relevant to this question, and essentially there is no evidence for greater safety of organic food over conventional food.
With regard to pesticides, it must also be noted that organic farming, while using methods to minimize pests and the need for pesticides, still uses organic, rather than synthetic, pesticides. For example a rotenone-pyrethrin mixture is commonly used. Such pesticides are not as well studied as synthetic pesticides, often require more applications, and may persist longer in the soil. In fact the use of “natural” pesticides is nothing more than an appeal to the naturalistic fallacy – there really is no evidence for superior safety, and they have not been adequately studied.
There is a recent study which has garnered a great deal of press linking organophosphates – a type of synthetic pesticide – to higher prevalence of ADHD. However, this is a preliminary observational study. While interesting, it really can only be used to justify further research, not any conclusions regarding the effects of organophosphates. (I discuss this article in more detail here.)
It does seem reasonable to minimize human exposure to pesticides. This can be accomplished, at least in part, however, by simply washing all produce thoroughly. I could not find any direct comparisons of organic produce to thoroughly washed conventional produce, but what evidence we do have suggests that residue levels are below safety limits and can be lowered further by washing. This is an area that does require continued monitoring and research, however.
Conclusion
Overall there does not appear to be any advantage for health to organic farming (sustainability and environmental effects being a separate issue). However, despite the fact that organic farming has been around for over 50 years, there is a surprisingly small amount of quality research available. The organic farming industry and popularity of organic products is growing. Organic products are more expensive, and questions remain about whether or not such methods would be adequate to supply our food needs. There may also be hidden health risks or unintended consequences to relying upon organic farming. There may also be benefits that have not been adequately documented. Therefore, this is one area where I think it is reasonable to conclude more research is genuinely needed.
UNIX Sysadmin Boot Camp: bash
Welcome back to UNIX Sysadmin Boot Camp. You’ve had a few days to get some “reps” in accessing your server via SSH, so it’s about time we add some weight to your exercise by teaching you some of the tools you will be using regularly to manage your server.
As we mentioned earlier in this series, customers with control panels like cPanel/WHM and Plesk might be tempted to rely solely on those graphical interfaces. They are much more user-friendly in terms of performing routine server administration tasks, but at some point, you’re going to need to get down and dirty on the command line. It’s inevitable. This is where you’ll use bash commands.
Here are some of the top 10 essential commands you should get to know and remember in bash. Click any of the commands to go to its official “manual” page.
man
– This command provides a manual of other bash commands. Want more info on a command? Typeman commandname
, and you’ll get more information about “commandname” than you probably wanted to know. It’s extremely useful if you need a quick reference for a command, and it’s often much more detailed and readable than a simple--help
or--h
extension.ls
– This command lets you list results. I showed you an example of this above, but the amount of options that are available to you with this command are worth looking into. Using the “manual” command above, runman ls
and check out the possibilities. For example, if you’re in/etc
, runningls –l /etc
will get you a slightly more detailed list. My most commonly used list command isls –hal
. Pop quiz for you (where you can test yourman
skills): What does the-hal
mean?cd
– This command lets you change directories. Want to go to/etc/
?cd /etc/
will take you there. Want to jump back a directory?cd ..
does the trick.mv
– This command enables you to move files and folders. The syntax ismv originalpath/to/file newpath/to/file
. Simple! There are more options that you can check out with theman
command.rm
– This command enables you to remove a file or directory. In the same vein as themv
command, this is one of those basic commands that you just have to know. By runningrm filename
, you remove the “filename” file.cp
– This command enables you to copy files from one place to another. Want to make a backup of a file before editing it? Runcp origfile.bla origfile.bak
, and you have a backup in case your edit oforigfile.bla
goes horrendously wrong and makes babies cry. The syntax is simply:cp /source /destination
. As with the above commands, check out the manual by runningman cp
for more options.tar
– On its own,tar
is a command to group a bunch of files together, uncompressed. These files can then be compressed into .gzip format. The command can be used for creating or extracting, so it may be a good idea to familiarize yourself with the parameters, as you may find yourself using it quite often. For a GUI equivalent, think 7-zip or WinRAR for Windows.wget
– I love the simplicity of this little command. It enables you to “get” or download a target file. Yes, there are options, but all you need is a direct link to a file, and you just pull one of these:wget urlhere
. Bam! That file starts downloading. Doesn’t matter what kind of file it is, it’s downloaded.top
– This handy little binary will give you a live view of memory and CPU usage currently affecting your machine, and is useful for finding out where you need to optimize. It can also help you pinpoint what processes may be causing a slowdown or a load issue.chmod
– This little sucker is vital to make your server both secure and usable, particularly when you’re going to be serving for the public like you would with a web server. If you read about how I learned to stop worrying and love the bomb, er permissions, you should be familiar with this command and its connotations. Combine good usage of permission and iptables, and you have a locked down server
When you understand how to use these tools, you can start to monitor and track what’s actually happening on your server. The more you know about your server, the more effective and efficient you can make it. In our next installment, we’ll touch on some of the most common server logs and what you can do with the information they provide.
Did I miss any of your “essential” bash commands in my top 10 list? Leave a comment below with your favorites along with a quick explanation of what they do.
-Ryan
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