Microbiology – Wikipedia, the free encyclopedia

Microbiology (from Greek , mkros, "small"; , bios, "life"; and -, -logia) is the study of microscopic organisms, either unicellular (single cell), multicellular (cell colony), or acellular (lacking cells).[1] Microbiology encompasses numerous sub-disciplines including virology, mycology, parasitology, and bacteriology.

Eukaryotic microorganisms posses membrane-bound cell organelles and include fungi and protists, whereas prokaryotic organismswhich all are microorganismsare conventionally classified as lacking membrane-bound organelles and include eubacteria and archaebacteria. Microbiologists traditionally relied on culture, staining, and microscopy. However, less than 1% of the microorganisms present in common environments can be cultured in isolation using current means.[2] Microbiologists often rely on extraction or detection of nucleic acid, either DNA or RNA sequences.

Viruses have been variably classified as organisms,[3] as they have been considered either as very simple microorganisms or very complex molecules. Prions, never considered microorganisms, have been investigated by virologists, however, as the clinical effects traced to them were originally presumed due to chronic viral infections, and virologists took searchdiscovering "infectious proteins".

As an application of microbiology, medical microbiology is often introduced with medical principles of immunology as microbiology and immunology. Otherwise, microbiology, virology, and immunology as basic sciences have greatly exceeded the medical variants, applied sciences.[4][5][6]

The branches of microbiology can be classified into pure and applied sciences.[7] Microbiology can be also classified based on taxonomy, in the cases of bacteriology, mycology, protozoology, and phycology. There is considerable overlap between the specific branches of microbiology with each other and with other disciplines, and certain aspects of these branches can extend beyond the traditional scope of microbiology.

While some fear microbes due to the association of some microbes with various human illnesses, many microbes are also responsible for numerous beneficial processes such as industrial fermentation (e.g. the production of alcohol, vinegar and dairy products), antibiotic production and as vehicles for cloning in more complex organisms such as plants. Scientists have also exploited their knowledge of microbes to produce biotechnologically important enzymes such as Taq polymerase, reporter genes for use in other genetic systems and novel molecular biology techniques such as the yeast two-hybrid system.

Bacteria can be used for the industrial production of amino acids. Corynebacterium glutamicum is one of the most important bacterial species with an annual production of more than two million tons of amino acids, mainly L-glutamate and L-lysine.[8]

A variety of biopolymers, such as polysaccharides, polyesters, and polyamides, are produced by microorganisms. Microorganisms are used for the biotechnological production of biopolymers with tailored properties suitable for high-value medical application such as tissue engineering and drug delivery. Microorganisms are used for the biosynthesis of xanthan, alginate, cellulose, cyanophycin, poly(gamma-glutamic acid), levan, hyaluronic acid, organic acids, oligosaccharides and polysaccharide, and polyhydroxyalkanoates.[9]

Microorganisms are beneficial for microbial biodegradation or bioremediation of domestic, agricultural and industrial wastes and subsurface pollution in soils, sediments and marine environments. The ability of each microorganism to degrade toxic waste depends on the nature of each contaminant. Since sites typically have multiple pollutant types, the most effective approach to microbial biodegradation is to use a mixture of bacterial and fungal species and strains, each specific to the biodegradation of one or more types of contaminants.[10]

Symbiotic microbial communities are known to confer various benefits to their human and animal host's health including aiding digestion, production of beneficial vitamins and amino acids, and suppression of pathogenic microbes. Some benefit may be conferred by consuming fermented foods, probiotics (bacteria potentially beneficial to the digestive system) and/or prebiotics (substances consumed to promote the growth of probiotic microorganisms).[11][12] The ways the microbiome influences human and animal health, as well as methods to influence the microbiome are active areas of research.[13]

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Microbiology - Wikipedia, the free encyclopedia

I-522: Draw your conclusions from evidence

Science points out that GMOs are safe for human consumption

As a senior in microbiology at the University of Washington, my education has been based upon making decisions and drawing conclusions from evidence [I-522: Ads stretch truth on what foods would be labeled, left out, page one, Oct. 23].

So when I hear the supporters of I-522 spew their anti-GMO rhetoric without legitimate evidence, it flies in the face of everything Ive been taught.

An overwhelming majority of scientific and medical experts including the American Association for the Advancement of Science, the National Academy of Sciences and even the World Health Organization have all agreed that GMOs are safe for human consumption. Why are we being asked to ignore the experts and submit to the fear the proponents are pushing?

The American Medical Association says, There is no scientific justification for special labeling of bioengineered foods. So what justification is there? I-522 would put what is functionally a warning label on foods tricking consumers into believing they have something to fear.

Legislating with fear and the rejection of facts has never been a good strategy. This measure is nothing but fear mongering by those with an anti-science, anti-corporation slant bent on forcing their own unfounded fears down our throats.

They cant scare me away from the truth.

Ryland Bydalek, Kenmore

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I-522: Draw your conclusions from evidence

Microbiome in gut, mouth, and skin of low birth weight infants differentiate weeks after birth

PUBLIC RELEASE DATE:

29-Oct-2013

Contact: Jim Sliwa jsliwa@asmusa.org 202-942-9297 American Society for Microbiology

Low birth weight infants are host to numerous microorganisms immediately after birth, and the microbiomes of their mouths and gut start out very similar but differentiate significantly by day 15 according to a study published in mBio, the online open-access journal of the American Society for Microbiology.

"We could watch this differentiation over time. With each passing day, two body sites [mouth and distal gut] became more and more differentiated from each other. It was a consistent pattern," says co-author Elizabeth K. Costello of Stanford University.

Low birth weight infants, who are often born premature, are more susceptible than normal weight infants to invasive infections like necrotizing enterocolitis, a vulnerability that may be related to colonization by bacteria from their surroundings. Unlike adults, the microbiomes of the mouth, skin, and gut of infants right after birth are undifferentiated, says Costello - the microbiomes look more or less similar at each of these body sites. The researchers sought to find out how rapidly the communities of microbes in these different sites take on a character of their own.

They examined changes in the oral, skin, and gut microbiomes of low birth weight infants over the course of the first three weeks after birth and found that although the microbiomes in each of these sites start our markedly similar, they gradually differentiate over time. This is the first time the differentiation of the microbiota in multiple body sites in newborn infants has been investigated.

"We chose to look at premature infants between the ages of eight and 21 days old and asked, over this time period, what is going on with their oral, gut and skin communities," says Costello. The period from 8 to 21 days after birth marks a critical window for colonization of an infant, and it's also the period of onset for necrotizing enterocolitis (although none of the infants in this study were struck by the disease).

The researchers collected stool, saliva, and skin swabs from six low birth weight infants (five of whom were born premature) that ranged in weight from 1.65 - 4.01 lbs on postnatal days 8, 10, 12, 15, 18, and 21. They amplified, pyrosequenced, and analyzed the bacterial 16S genes present in each sample and compared them with analogous data from normal-birthweight (NBW) infants and healthy adults.

In the 8 - 21 day age range, there was a subtle but important divergence in the composition of the oral and gut microbiotas, a differentiation that was mostly driven by changes that evolved in the composition of the gut microbiome. The babies' microbiomes were also dominated at times by bacterial types that have been associated with newborn infections and necrotizing enterocolitis, including Staphylococcus, C. perfringens, P. aeruginosa and others.

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Microbiome in gut, mouth, and skin of low birth weight infants differentiate weeks after birth

Canadian discoveries pivotal to the science of toxins and illness associated with E. coli

PUBLIC RELEASE DATE:

29-Oct-2013

Contact: Jenny Ryan jenny.ryan@nrcresearchpress.com Canadian Science Publishing (NRC Research Press)

Many Canadian scientists and clinicians were unsung heroes during the early years (19771983) of research unfolding around verotoxigenic E. coli (VTEC). In an article published today in the Canadian Journal of Microbiology, Dr. Cimolai, a clinician and medical microbiologist, documents the history of this area of study, focusing on the key discoveries and major contributions made by Canadians to the science of what many people refer to as hamburger disease. This disease poses an ongoing and significant threat to the general population; examples of its impact are the Walkerton outbreak and recent meat tainting episodes affecting the beef production industry in Alberta, as well as food contamination in Europe.

Dr. Cimola writes As stories of microbiological and infectious disease discoveries are told, one of the most charming of these in Canadian history is the recognition of VTEC and associated disease. The considerable burden and impact of E. coli-associated infections is experienced worldwide. The contributions of our national scientists in this field must be seen as a vital part of medical and microbiological Canadiana.

Cimolai reports on key contributors, including Jack Konowalchuk, Joan Speirs and their collaborators in Ottawa, who defined the E. coli verotoxin; Mohamed Karmali, Martin Petric and colleagues at The Hospital for Sick Children in Toronto, who established the association of VTEC and hemolytic-uremic syndrome; Carlton Gyles, University of Guelph Veterinary School, and Peter Fleming, Hermy Lior and their scientific and medical peers. Many Canadian investigators, but especially those in the veterinary school at the University of Guelph, also contributed to the science of VTEC among animals. The interactions between clinical and veterinary researchers led to a then unprecedented exponential growth in the knowledge base of VTEC. The Toronto group led by Karmali stood front and centre during the most critical period of scientific progress, but certainly Konowalchuk et al.s findings were pivotal.

From a Canadian perspective, many sentinel and key observations emerged early in the general science of this topic, and as a Canadian, one can be proud of how quickly the essence of these contributions was disseminated across Canada and worldwide, explains Dr. Cimolai. While perhaps not as impactful as the Banting and Best story, perhaps it may be the next best thing in the realm of microbiology but with a Canadian flavour.

These toxin-producing E. coli are disease-causing bacteria and can cause episodes of diarrhea and bloody diarrhea. They can also lead to a complicated medical disorder known as hemolytic uremic syndrome, the most common acute form of serious kidney failure among children. It is also a major disease-causing germ among animals, but especially bovine and porcine; farm animals and their related food products can serve as a source for the bacterium to humans. Water can also be contaminated by these germs. The profound impact of disease from these toxigenic E. coli continues to be felt around the globe.

###

Read the full story in The Canadian Contribution to the Science of Verotoxigenic Escherichia coli and Associated Illnesses: The Early Years, published today in the Canadian Journal of Microbiology. Dr. Nevio Cimolai is a medical microbiologist and professor in the Department of Pathology and Laboratory Medicine, Faculty of Medicine, The University of British Columbia in Vancouver, B.C.

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Canadian discoveries pivotal to the science of toxins and illness associated with E. coli

Luisa from Colombia is studying for her Doctorate of Microbiology at MSU – Video


Luisa from Colombia is studying for her Doctorate of Microbiology at MSU
Luisa from Colombia gives a student testimonial about studying for her Doctorate of Microbiology at Montana State University in Bozeman, Montana. Learn more about Montana State University...

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Luisa from Colombia is studying for her Doctorate of Microbiology at MSU - Video

NCKU Transnational Research Team Uncovers the Structural Basis for Future Development of Potential Asthma Drugs

TAINAN, Taiwan--(BUSINESS WIRE)--

National Cheng Kung University (NCKU) Department of Microbiology and Immunology Assistant Professor Shu-Ying Wang had her joint multidisciplinary research published in one of the worlds most prestigious academic journal, the Proceedings of the National Academy of Sciences of America (PNAS) recently.

The research article entitled Structural insights into the Interaction of Interleukin 33 (IL-33) with Its Receptors is in fact a joint effort with Beijing Tsinghua University Professors Xinquan Wang and Xi Liu, as well as Michal Hammel and John A. Tainer in Lawrence Berkeley National Laboratory, aiming to explore the molecular mechanism of IL-33 to provide structural basis for developing drugs to treat asthma and other innate immune disease.

The scientific reports in the past have shown that the outbreak and deterioration of hay fever, asthma, allergic rhinitis and other innate immune disease are related to IL-33, according to Wang.

She said, It was found that patients with these diseases have demonstrated higher content of IL-33 than normal people. IL-33 is the newest and the least understood member in the family of IL-1 cytokines. How IL-33 exerts its function to cause allergy and asthma has not yet been clarified.

In our research, we combine the technologies of protein crystallography and small-angle X-ray scattering (SAXS) that enable us to visualize the high-resolution molecular interactions between IL-33 and its receptors, and discover unprecedented structural information, showing IL-33 receptor ST2 is flexible and exist in different conformation in solution, revealed Wang.

Wang added, The project and collaboration were initiated by Xinquan Wang, who has a keen interest in studying structure-function relationship of IL-1 family of cytokines and has published the very first structure of ternary complex, composed of cytokine, receptor and co-receptor, in Nature Immunology in 2010. In order to truly understand how these molecules function in solution, Xinquan Wang called me to collaborate on this project by using the technique small-angle X-ray scattering (SAXS).

Wang says, Rational drug design, which relies on the three-dimensional structure information, plays an important role in expediting the drug development process. By revealing the structural knowledge and understanding of molecular mechanism of IL-33, there will be higher possibility of developing new drugs in the future to effectively cure innate immune diseases.

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NCKU Transnational Research Team Uncovers the Structural Basis for Future Development of Potential Asthma Drugs

Copious community-associated MRSA in nursing homes

PUBLIC RELEASE DATE:

24-Oct-2013

Contact: Jim Sliwa jsliwa@asmusa.org 202-942-9297 American Society for Microbiology

More than one quarter of residents of 26 nursing homes in Orange County, California carry community-associated methicillin-resistant Staphylococcus aureus (MRSA), which spread more easily, and may cause more severe infection than MRSA traditionally associated with healthcare facilities, according to a paper published in the November 2013 issue of the Journal of Clinical Microbiology.

"Nursing homes need to be part of MRSA control strategies in healthcare facilities," says Lyndsey Hudson of Imperial College of London, the lead author on the study.

Community-associated MRSA are strains that did not originate in hospitals. Burden and transmission of MRSA in nursing homes are likely driven by the number of residents with chronic illnesses or indwelling devices according to the study, which is the first-ever to assess MRSA diversity in nursing homes at a population level and across a large region.

Hudson hopes these findings will help clinicians design prevention and mitigation strategies.

The investigators had suspected that community-associated MRSA strains were infiltrating nursing homes, as they had previously been shown to be appearing in hospitals. The low turnover of patients in nursing homes as compared to hospitals dictates a much lower frequency of potential introductions of MRSA into those populations. However, the investigators were surprised at how prevalent the strains turned out to be. A total of 837 nursing home residents, of 3,806 whose noses were swabbed by the investigators, carried community-associated MRSA.

Risk factors for MRSA include diabetic foot ulcers, especially in cases of hospital-acquired MRSA, and various studies have found MRSA to be present in 10-30 percent of diabetic wounds. Additionally, older age is an established risk factor for hospital-acquired MRSA, and indwelling catheters and other medical devices are also risk factors.

"These findings support the need for regional approaches to reduce MRSA," says Hudson. These might include having hospitals and nursing homes work together to identify patients with MRSA, and apply prevention strategies to stop the spread of infection.

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Copious community-associated MRSA in nursing homes

Storrs Agricultural Experiment Station designated as a Milestones in Microbiology site

PUBLIC RELEASE DATE:

23-Oct-2013

Contact: Garth Hogan ghogan@asmusa.org 202-942-9389 American Society for Microbiology

Washington, DC -- October 23, 2013 -- The Storrs Agricultural Experiment Station, site of Herbert William Conn's Research Laboratory at the Connecticut Agricultural College (later the University of Connecticut, Storrs) has been named a Milestones in Microbiology site by the American Society for Microbiology (ASM). A dedication ceremony is scheduled for Saturday, October 26, 2013, at 4:30 pm EST in the University of Connecticut, Storrs Biology/Physics Building Foyer. The ASM Milestones in Microbiology program recognizes institutions and scientists that have made significant contributions toward advancing the science of microbiology.

A symposium, "H. W. Conn's Golden Age of Bacteriology Becomes the New Golden Age of Microbial Biology," precedes the dedication ceremony from 1:30 -- 4:30 pm. During the ceremony, Stanley Maloy, Past President of the ASM, will present an official Milestones in Microbiology plaque on behalf of the Society.

"Herbert Conn played a central role in our understanding of the importance of microbes in agriculture, and how they impact public health -- problems that remain as relevant today as when he worked on them over a hundred years ago," says Maloy. "And, he did not simply publish these discoveries in academic journals for other scientists, but he lucidly explained the importance of microbes to the public as well."

Herbert W. Conn's international fame in dairy bacteriology began during his tenure as the bacteriologist at the Storrs Agricultural Experiment Station on the campus of the Connecticut Agricultural College (1888-1906). His research on the formation of butter and the causes of milk spoilage led to advances in bacterial cultivation and dairy foodstuff production. His findings served as the basis for the "Butter Exhibition" at the 1893 Chicago World's Fair, which allowed the public to taste flavors of butters made using different bacteria.

Starting in 1892, Conn served as "Lecturer on Dairy Bacteriology" at the Connecticut Agricultural College and so established the first formal instruction in Bacteriology at what was to become the University of Connecticut. After Conn stepped down from his instructional duties at the College in 1906, his laboratory assistant and former student William Esten continued in Conn's footsteps and became Professor of Dairy Bacteriology at the College.

Conn became a leading advocate for public health laws as a result of his work, and in 1905 was appointed Director of the new Connecticut State Board of Health Laboratory, one of the first such bodies in the United States. He founded the American Academy of Public Health, served on the New York Commission on Milk Standards, and was Director of the Cold Spring Harbor Biological Laboratory from 1889-1897. Conn was also an accomplished educator at Wesleyan University in Middletown, Connecticut, where he founded the Biology Department and served as its head until his death in 1917.

While working at the Agricultural Station, Conn collaborated with Drs. A. C. Abbott (University of Pennsylvania) and E. O. Jordan (University of Chicago) to found the Society of American Bacteriologists (later the American Society for Microbiology). At the inaugural meeting of the Society held at Yale University in 1899, Conn presented research that reflected his achievements at the Station. His presentation, "Natural Varieties of Bacteria," included an exhibit of cultures of a highly variable Micrococcus which he had isolated from milk.

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Storrs Agricultural Experiment Station designated as a Milestones in Microbiology site

ASTM International Occupational Health and Safety Committee Recognizes Dr. …

October 22, 2013 - Frederick Passman, Ph.D., president of Biodeterioration Control Associates Inc. in Princeton, NJ, has received Award of Merit from Committee E34 on Occupational Health and Safety. Passman currently serves as E34 vice chairman and was honored for his outstanding leadership and contributions to standards for the safety of workers and the scientific practice of microbiology. A member of ASTM since 1977, Passman also serves on Committee D02 on Petroleum Products, Liquid Fuels and Lubricants. ASTM International 100 Barr Harbor Dr., Box C700 West Conshohocken, PA, 19428-2959 USA Press release date: October 17, 2013

W. CONSHOHOCKEN, Pa. Frederick Passman, Ph.D., president of Biodeterioration Control Associates Inc. in Princeton, N.J., has received the ASTM International Award of Merit from Committee E34 on Occupational Health and Safety. The Award of Merit and its accompanying title of fellow is ASTMs highest organizational recognition for distinguished service and outstanding participation in ASTM technical committee activities.

Passman, who currently serves as E34 vice chairman, was honored by the committee for his outstanding leadership and contributions to standards for the safety of workers and the scientific practice of microbiology. He has been chairman of Subcommittee E34.50 on Health and Safety Standards for Metal Working Fluids since 2006, and has been instrumental in developing more than 50 standards on microbiology as applied to real world issues, including the health and safety of workers in the metal trades.

A member of ASTM International since 1977, Passman also serves on Committee D02 on Petroleum Products, Liquid Fuels and Lubricants, where he is vice chairman of D02.14 on Stability and Cleanliness of Liquid Fuels, as well as D18 on Soil and Rock, D19 on Water and E35 on Pesticides, Antimicrobials and Alternative Control Agents. Other awards received include an Award of Excellence and Award of Achievement from D02 and a 25-Year Service Award from E35.

A graduate of the University of New Hampshire, Durham, N.H., where he received a doctorate in marine microbiology, Passman served in the United States Navy (active and reserves) for more than 30 years, commanding six successive Naval reserve units and receiving four Navy Commendation Medals before retiring as a captain in 1998. Passman founded Biodeterioration Control Associates in 1992 to provide consulting expertise for microbial contamination control in industrial systems. He has represented clients such as ExxonMobil, Dow Chemical Co., the National Biodiesel Board, New York City Transit Authority, Northwestern University and Rohm & Haas Co., among others. He also serves as associate editor for the journal International Biodegradation and Biodeterioration and magazine Tribology and Lubrication Technology.

Outside ASTM International, Passman is a fellow of the Society of Tribologists and Lubrication Engineers and a member of the American Society for Microbiology, International Biodeterioration and Biodegradation Society, Military Officers Association, National Association of Corrosion Engineers, Naval Order of the United States, Society for Industrial Microbiology and Biotechnology, and the United States Naval Institute.

ASTM International is one of the largest international standards development and delivery systems in the world. ASTM International meets the World Trade Organization (WTO) principles for the development of international standards: coherence, consensus, development dimension, effectiveness, impartiality, openness, relevance and transparency. ASTM standards are accepted and used in research and development, product testing, quality systems and commercial transactions.

View this release on the ASTM Web site at http://www.astmnewsroom.org.

ASTM PR Contact: Erin K. Brennan, Phone: 610-832-9602; ebrennan@astm.org

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ASTM International Occupational Health and Safety Committee Recognizes Dr. ...

Green Roof- Microbiology building, Colorado State University, Fort Collins, CO. – Video


Green Roof- Microbiology building, Colorado State University, Fort Collins, CO.
Up on top of the recent 2008 renovation of the microbiology study lounge, sits a 400 square foot experimental green roof. The roof was a collaboration betwee...

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Green Roof- Microbiology building, Colorado State University, Fort Collins, CO. - Video

Foot and mouth disease in sub-Saharan Africa moves over short distances, wild buffalo are a problem

PUBLIC RELEASE DATE:

22-Oct-2013

Contact: Jim Sliwa jsliwa@asmusa.org 202-942-9297 American Society for Microbiology

New research shows that in sub-Saharan Africa the virus responsible for foot and mouth disease (FMD) moves over relatively short distances and the African buffalo are important natural reservoirs for the infection. The study, published in mBio, the online open-access journal of the American Society for Microbiology, sheds light on how the type of FMD virus called SAT 2 emerged in sub-Saharan Africa and identifies patterns of spread in countries where SAT 2 is endemic.

"The data suggest that the common ancestor of all SAT 2 was in [African] buffalo. It's very clear that historically infections have moved from buffalo to cattle," says corresponding author Matthew Hall of the University of Edinburgh in Scotland.

Foot and mouth disease (FMD) is devastating to livestock all over the world, but it's a particular problem in Africa, where wildlife that harbor the virus are thought to pass it on to their domesticated cousins.

FMD strikes cloven-hoofed animals, presenting as a high fever, blistering in the mouth and feet, decline in milk production in females, and weight loss. Although most animals recover over the course of months, some die of complications from the disease. In wild buffalo, the disease is very rarely symptomatic and animals can be persistently infected for a period of several years. The SAT 2 serotype of the virus is endemic in sub-Saharan Africa, but it has crossed the Sahara and caused outbreaks in North Africa and the Middle East between 1990 and 2012.

In the hopes they could eventually predict future outbreaks, Hall and his colleagues wanted a better picture of the diversity of SAT 2 viruses in sub-Saharan Africa and how they move around from one location to another. They used 250 genetic sequences of the VP1 section of the genome from SAT 2 isolates taken from all over sub-Saharan Africa and tracked the appearance of the various unique 'topotypes' over the region.

Hall says the patterns in which the topotypes appear in different places gives strong support to the idea that the virus is spread by infected hosts in land movements over relatively short distances. What's more, African buffalo are an important "maintenance host", meaning they maintain a reservoir of the virus that can re-infect domesticated animals after time and culling has ended an outbreak among livestock. The relationships between the 250 sequences also indicate that it's possible the original source of the SAT 2 viruses that are now found in wild and domesticated animals was African buffalo.

To Hall, these results indicate that genetic tracking of viruses has a lot of potential for making inferences about viral spread and heading off future outbreaks.

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Foot and mouth disease in sub-Saharan Africa moves over short distances, wild buffalo are a problem