A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58 – Nature.com

Posted: February 3, 2022 at 4:16 pm

Foxman, B. The epidemiology of urinary tract infection. Nat. Rev. Urol. 7, 653660 (2010).

PubMed Google Scholar

Manges, A. R. et al. Global extraintestinal pathogenic Escherichia coli (ExPEC) lineages. Clin. Microbiol. Rev. 32, 125 (2019).

Google Scholar

Royer, G. et al. Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period. Genome Med. 13, 77 (2021).

CAS PubMed PubMed Central Google Scholar

McKinnon, J., Roy Chowdhury, P. & Djordjevic, S. P. Genomic analysis of multidrug-resistant Escherichia coli ST58 causing urosepsis. Int. J. Antimicrob. Agents 52, 430435 (2018).

CAS PubMed Google Scholar

Roer, L. et al. WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark. J. Antimicrob. Chemother. 72, 19221929 (2017).

CAS PubMed Google Scholar

Flament-Simon, S.-C. et al. High prevalence of ST131 subclades C2-H30Rx and C1-M27 among extended-spectrum -lactamase-producing Escherichia coli causing human extraintestinal infections in patients from two hospitals of Spain and France during 2015. Front. Cell Infect. Microbiol. 10, 125 (2020).

PubMed PubMed Central Google Scholar

Mamani, R. et al. Sequence types, clonotypes, serotypes, and virotypes of extended-spectrum -lactamase-producing Escherichia coli causing bacteraemia in a Spanish hospital over a 12-year period (2000 to 2011). Front. Microbiol. 10, 1530 (2019).

PubMed PubMed Central Google Scholar

Pietsch, M. et al. Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany. BMC Genomics 19, 601 (2018).

PubMed PubMed Central Google Scholar

Day, M. J. et al. Population structure of Escherichia coli causing bacteraemia in the UK and Ireland between 2001 and 2010. J. Antimicrob. Chemother. 71, 21392142 (2016).

CAS PubMed PubMed Central Google Scholar

Wang, S. et al. Antimicrobial resistance and molecular epidemiology of Escherichia coli causing bloodstream infections in three hospitals in Shanghai, China. PLoS ONE 11, e0147740 (2016).

PubMed PubMed Central Google Scholar

Irenge, L. M. et al. Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes. BMC Infect. Dis. 19, 137 (2019).

PubMed PubMed Central Google Scholar

Paramita, R. I. et al. Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing. PLoS ONE 15, e0244358 (2020).

CAS PubMed PubMed Central Google Scholar

Dahmen, S., Mtayer, V., Gay, E., Madec, J.-Y. & Haenni, M. Characterization of extended-spectrum beta-lactamase (ESBL)-carrying plasmids and clones of Enterobacteriaceae causing cattle mastitis in France. Vet. Microbiol. 162, 793799 (2013).

CAS PubMed Google Scholar

Nesch-Inderbinen, M. et al. Molecular types, virulence profiles and antimicrobial resistance of Escherichia coli causing bovine mastitis. Vet. Rec. Open 6, e000369 (2019).

PubMed PubMed Central Google Scholar

Ali, A., Ali, Q., Ali, R. & Mohsin, M. Draft genome sequence of an extended-spectrum -lactamase-producing Escherichia coli ST58 isolate from cattle in Pakistan. J. Glob. Antimicrob. Resist. 21, 303305 (2020).

PubMed Google Scholar

Borges, C. A., Tarlton, N. J. & Riley, L. W. Escherichia coli from commercial broiler and backyard chickens share sequence types, antimicrobial resistance profiles, and resistance genes with human extraintestinal pathogenic Escherichia coli. Foodborne Pathog. Dis. 16, 813822 (2019).

CAS PubMed Google Scholar

Maamar, E. et al. High prevalence of extended-spectrum and plasmidic AmpC beta-lactamase-producing Escherichia coli from poultry in Tunisia. Int. J. Food Microbiol. 231, 6975 (2016).

CAS PubMed Google Scholar

Chah, K. F. et al. Detection and molecular characterisation of extended-spectrum -lactamase-producing enteric bacteria from pigs and chickens in Nsukka, Nigeria. J. Glob. Antimicrob. Resist. 15, 3640 (2018).

PubMed Google Scholar

Song, J., Oh, S.-S., Kim, J., Park, S. & Shin, J. Clinically relevant extended-spectrum -lactamase-producing Escherichia coli isolates from food animals in South Korea. Front. Microbiol. 11, 604 (2020).

PubMed PubMed Central Google Scholar

Ahmed, S., Olsen, J. E. & Herrero-Fresno, A. The genetic diversity of commensal Escherichia coli strains isolated from non-antimicrobial treated pigs varies according to age group. PLoS ONE 12, e0178623 (2017).

PubMed PubMed Central Google Scholar

Blaak, H. et al. Detection of extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli on flies at poultry farms. Appl. Environ. Microbiol. 80, 239246 (2014).

ADS CAS PubMed PubMed Central Google Scholar

Vignaroli, C. et al. Multidrug-resistant and epidemic clones of Escherichia coli from natural beds of Venus clam. Food Microbiol. 59, 16 (2016).

CAS PubMed Google Scholar

Corts-Corts, G. et al. Detection and molecular characterization of Escherichia coli strains producers of extended-spectrum and CMY-2 type beta-lactamases, isolated from Turtles in Mexico. Vector Borne Zoonotic Dis. 16, 595603 (2016).

PubMed Google Scholar

Furlan, J. P. R., Lopes, R., Gonzalez, I. H. L., Ramos, P. L. & Stehling, E. G. Comparative analysis of multidrug resistance plasmids and genetic background of CTX-M-producing Escherichia coli recovered from captive wild animals. Appl. Microbiol. Biotechnol. https://doi.org/10.1007/s00253-020-10670-4 (2020).

Fuentes-Castillo, D. et al. Genomic characterization of multidrug-resistant ESBL-producing Escherichia coli ST58 causing fatal colibacillosis in critically endangered Brazilian merganser (Mergus octosetaceus). Transbound. Emerg. Dis. 68, 258266 (2021).

CAS PubMed Google Scholar

Mattioni Marchetti, V. et al. Deadly puppy infection caused by an MDR Escherichia coli O39 blaCTX-M-15, blaCMY-2, blaDHA-1, and aac(6)-Ib-cr - positive in a breeding Kennel in Central Italy. Front. Microbiol. 11, 584 (2020).

PubMed PubMed Central Google Scholar

de Carvalho, M. P. N. et al. International clones of extended-spectrum -lactamase (CTX-M)-producing Escherichia coli in peri-urban wild animals, Brazil. Transbound Emerg. Dis. https://doi.org/10.1111/tbed.13558 (2020).

Batalha de Jesus, A. A. et al. High-level multidrug-resistant Escherichia coli isolates from wild birds in a large urban environment. Microb. Drug Resist. 25, 167172 (2019).

CAS PubMed Google Scholar

Wyrsch, E. R. et al. Whole-genome sequence analysis of environmental Escherichia coli from the faeces of straw-necked ibis (Threskiornis spinicollis) nesting on inland wetlands. Microb. Genom. 6, 116 (2020).

Google Scholar

Wyrsch, E. R., Chowdhury, P. R., Jarocki, V. M., Brandis, K. J. & Djordjevic, S. P. Duplication and diversification of a unique chromosomal virulence island hosting the subtilase cytotoxin in Escherichia coli ST58. Microb. Genom. 6, (2020).

Zurfluh, K. et al. Antimicrobial resistant and extended-spectrum -lactamase producing Escherichia coli in common wild bird species in Switzerland. Microbiologyopen 8, e845 (2019).

CAS PubMed PubMed Central Google Scholar

Jamborova, I. et al. Plasmid-mediated resistance to cephalosporins and fluoroquinolones in various Escherichia coli sequence types isolated from rooks wintering in Europe. Appl. Environ. Microbiol. 81, 648657 (2015).

ADS PubMed PubMed Central Google Scholar

Skurnik, D. et al. Emergence of antimicrobial-resistant Escherichia coli of animal origin spreading in humans. Mol. Biol. Evol. 33, 898914 (2016).

CAS PubMed Google Scholar

Zurfluh, K. et al. Key features of mcr-1-bearing plasmids from Escherichia coli isolated from humans and food. Antimicrob. Resist. Infect. Control 6, 91 (2017).

PubMed PubMed Central Google Scholar

Ben Said, L. et al. Detection of extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae in vegetables, soil and water of the farm environment in Tunisia. Int. J. Food Microbiol. 203, 8692 (2015).

PubMed Google Scholar

Nesch-Inderbinen, M., Treier, A., Zurfluh, K. & Stephan, R. Raw meat-based diets for companion animals: a potential source of transmission of pathogenic and antimicrobial-resistant Enterobacteriaceae. R. Soc. Open Sci. 6, 191170 (2019).

ADS PubMed PubMed Central Google Scholar

Reid, C. J., Blau, K., Jechalke, S., Smalla, K. & Djordjevic, S. P. Whole genome sequencing of Escherichia coli from store-bought produce. Front. Microbiol. 10, 3050 (2019).

PubMed Google Scholar

Ferjani, S. et al. Community fecal carriage of broad-spectrum cephalosporin-resistant Escherichia coli in Tunisian children. Diagn. Microbiol. Infect. Dis. 87, 188192 (2017).

PubMed Google Scholar

Ben Sallem, R. et al. IncI1 plasmids carrying bla(CTX-M-1) or bla(CMY-2) genes in Escherichia coli from healthy humans and animals in Tunisia. Microb. Drug Resist. 20, 495500 (2014).

PubMed Google Scholar

Stterlin, S. et al. Silver resistance genes are overrepresented among Escherichia coli isolates with CTX-M production. Appl. Environ. Microbiol. 80, 68636869 (2014).

ADS PubMed PubMed Central Google Scholar

Teunis, P. F. M. et al. Time to acquire and lose carriership of ESBL/pAmpC producing E. coli in humans in the Netherlands. PLoS ONE 13, e0193834 (2018).

PubMed PubMed Central Google Scholar

Chen, P.-A. et al. Characteristics of CTX-M extended-spectrum -lactamase-producing Escherichia coli strains isolated from multiple rivers in Southern Taiwan. Appl. Environ. Microbiol. 82, 18891897 (2016).

ADS CAS PubMed PubMed Central Google Scholar

Sacramento, A. G. et al. Genomic analysis of MCR-1 and CTX-M-8 co-producing Escherichia coli ST58 isolated from a polluted mangrove ecosystem in Brazil. J. Glob. Antimicrob. Resist. 15, 288289 (2018).

PubMed Google Scholar

Ben Said, L. et al. Characteristics of extended-spectrum -lactamase (ESBL)- and pAmpC beta-lactamase-producing Enterobacteriaceae of water samples in Tunisia. Sci. Total Environ. 550, 11031109 (2016).

ADS PubMed Google Scholar

Denamur, E., Clermont, O., Bonacorsi, S. & Gordon, D. The population genetics of pathogenic Escherichia coli. Nat. Rev. Microbiol. https://doi.org/10.1038/s41579-020-0416-x (2020).

Galardini, M. et al. Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study. PLoS Genet. 16, e1009065 (2020).

CAS PubMed PubMed Central Google Scholar

Manges, A. R. Escherichia coli causing bloodstream and other extraintestinal infections: tracking the next pandemic. Lancet Infect. Dis. 19, 12691270 (2019).

PubMed Google Scholar

Moran, R. A. & Hall, R. M. Evolution of regions containing antibiotic resistance genes in FII-2-FIB-1 ColV-Colla virulence plasmids. Microb. Drug Resist 24, 411421 (2018).

CAS PubMed Google Scholar

Johnson, T. J. Role of plasmids in the ecology and evolution of High-Risk extraintestinal pathogenic Escherichia coli clones. Ecosal Plus 9, 117 (2021).

Google Scholar

Johnson, T. J. et al. Horizontal gene transfer of a ColV plasmid has resulted in a dominant avian clonal type of Salmonella enterica serovar Kentucky. PLoS ONE 5, e15524 (2010).

ADS CAS PubMed PubMed Central Google Scholar

Skyberg, J. A. et al. Acquisition of avian pathogenic Escherichia coli plasmids by a commensal E. coli isolate enhances its abilities to kill chicken embryos, grow in human urine, and colonize the murine kidney. Infect. Immun. 74, 62876292 (2006).

CAS PubMed PubMed Central Google Scholar

Xu, W.-Y., Li, Y.-J. & Fan, C. Different loci and mRNA copy number of the increased serum survival gene of Escherichia coli. Can. J. Microbiol. 64, 147154 (2018).

CAS PubMed Google Scholar

Read more here:
A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58 - Nature.com

Related Posts