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Monthly Archives: March 2017
Powell gift supports fledgling UO Center for Genome Function … – AroundtheO
Posted: March 10, 2017 at 2:46 am
Longtime University of Oregon donors Sharon and Lloyd Powell a 1955 UO graduate have made a significant gift to the Center for Genome Function, a UO initiative led by an emerging team of UO biologists.
All of us in the labs are so grateful to Sharon and Lloyd for their investment in genome science at the UO, said lead researcher Eric Selker. Their gift will help us continue to claim a leadership position at the forefront of genetic research.
The centers innovative research seeks to understand the underlying processes of human genetics. Team members are helping fuel discoveries in the areas of cancer, neurological disorders, aging, infertility, birth defects, the side effects of drugs and environmental factors, and others.
The Powells gift provides essential support for the center, according to Selker, and is available for such expenses as lab startup costs, instrumentation and graduate student support.
The Powells have given extensively to the business school and intercollegiate athletics Powell Plaza outside Hayward Field is named for the family and Lloyd Powell has received the UOs Pioneer Award and Presidential Medal. He also served the UO Foundation as a trustee.
But it was the Powells 50-year relationship with UO fundraiser Herb Yamanaka, combined with Sharon Powells interest in science, which led to the gift.
Sharon wrote to me out of the blue, Yamanaka recalled. She said, Wed love to help you with any research you are doing around the human genome. It was a nice surprise. What a wonderful email to receive from two most generous Ducks.
Yamanaka has known Lloyd Powell dating back to Powells college days as a football player under UO coach Len Casanova. And theyve maintained that friendship as three generations of Powells attended the UO. Sons Peter and Tom, daughter-in-law Maryanne (Molly), and grandsons Brendan, Lane and Tate have grown into an extended family of Powell Ducks.
The Center for Genome Function is one focus of the UOs Clusters of Excellence hiring initiative. The clusters support UO President Michael Schills goal to hire an additional 80 to 100 tenure-track faculty members over the next five years to boost UO academics and research.
The Center for Genome Function added one new tenure-track faculty member in the past year, with plans to add two more. Jeffrey McKnight, formerly a Leukemia and Lymphoma Society fellow at the Fred Hutchinson Cancer Research Center in Seattle, joined current faculty members Selker and Diana Libuda.
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What Can You Learn From Your Own Genome? Science Writer Carl … – Scope (blog)
Posted: at 2:46 am
I was in high school when the human genome made it to front pages of newspapers around the world. Unlocking our genetic code had taken $2.7 billion and close to 15 years to finish. That was 2001.
Today, it costs only about $1,000 to sequence a whole genome a dollar figure low enough for personal genome sequencing to make sense. But what might it mean to get your own genome sequenced?
That was the question Carl Zimmer, bestselling author and science columnist for the New York Timesand other publications, explored at a symposium organized by the Stanford Center for Computational, Evolutionary Human Genomics this week.
Zimmers investigation into his genome began when a geneticist asked him if hed like his genome sequenced. I was stunned that the question could be asked, Zimmer said. It was like saying Would you like to go to Jupiter?
First, Zimmer said he signed up with the company Illumina to have his genome read. Days later, his clinical report came in with nothing to say about the more than 1,500 genes they had examined. The most detailed response was: Your muscle fibers are built for power, Zimmer said.
A boring genome is a good genome, Zimmer said. If theyd said, youve got Huntingtons, it wouldve been bad for me, but a great story.
Illuminas analysis reflected a tiny sampling of the information the genome contained, Zimmer said. Knowing that wasnt how scientists study genomes, Zimmer got his hands on the raw data the full 60 gigabytes of his blueprint DNA.
He said he found more than 20 scientists who volunteered to peer into what he calls the Zimmerome. Among the many things Zimmer discovered was that he has a mutation that puts him at risk for high cholesterol and another that makes it difficult to break down drugs. Zimmer said he learned he shares 1.4 million DNA variations with two random individuals from China and Nigeria. In addition, he found out that 2 percent of his genes are from Neanderthals and he has a surprising Italian ancestry hes still trying to trace all of which he chronicled in a series that appeared on STATcalled the Game of Genomes.
Zimmer said the experience taught him that although genome sequencing is now easy to access, its still quite difficult to extract meaningful information from our genes. The scientific community is still very far from being able to decipher the function of every single element in our genome, he said.
He found that currently, genome sequencing can help identify a variety of genetic disorders. But it is less clear what a healthy individual might gain from having his or her genome read.
Theres a disconnect between the morning-in-the-forest kind of hoopla about what you can find about your genome and what [scientists] can actually deliver to people who are healthy, Zimmer said. Its a fundamentally hard problem.
As Zimmer wrote in the Game of Genomes, This genomic noodling is great fun, although it may not mean that much to my own existence. Yet.
Previously:Here be dragons: Hard-to-sequence sections of genome remainandA leader in the Human Genome Project shares tale of personalized medicine, from 1980 until today Photo by Saul Bromberger and Sandra Hoover Photography
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Scientists reveal the secret of naked mole rat longevity – Medical Xpress
Posted: at 2:46 am
March 8, 2017
A group of Russian and German biologists and mathematicians led by profs. Victor Sadovnichii and Vladimir Skulachev (Moscow State University) and prof. Thomas Hildebrandt (Leibniz Institute, Berlin) have published a study in Physiological Reviews in support of a breakthrough hypothesis explaining the exceptional longevity of the naked mole rat (Heterocephalus glaber), an African rodent. According to the hypothesis, these animals had evolved a slow process of individual development resulting in a dramatic increase in the period of youth and a decelerated aging process.
A similar process has begun in humans, as well. Analysis of data on human longevity and the reproduction period indicates that humans have already slowed down the pace of our "master biological clock," and this deceleration has progressed throughout human history, resulting in increased lifespan and prolongation of youth.
Such regulation of the rate of aging means that the aging process (in both naked mole-rats and humans) is genetically programmed and cannot be explained by simple accumulation of random damage with age. This is a very important finding, because modern science is already capable of switching off some biological programsfor example, the process of cell suicide, apoptosis. Prof. Skulachev's research group is now trying to apply the same method to retard the program of aging using specially designed mitochondrially targeted antioxidants.
Victor Sadovnichii, rector of Moscow State University, says, "Aging studies are based on different statistical datasets. Traditionally it is one of the most mathematics-oriented areas of biology. In this particular case, statistical analysis demonstrated a very important fact: Human aging is already decelerating."
Vladimir Skulachev, head of Belozersky institute of Moscow State University, says, "I think our work proves that the biological evolution of two highly social species of mammals (humans and naked mole rats) resulted in deceleration of the aging program and prolongation of youth. So the aging is, indeed, a program, and it has already slowed down through natural selection. But we humans no longer rely on the extremely slow method of natural evolution. We use technical and scientific progress to achieve our goals. It is exactly the time when we must apply this method against aging."
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8 Principles for Leaders to Make the Most of the Exponential Age (Part 2) – Singularity Hub
Posted: at 2:46 am
How do top CEOs lead during this exponential age?
How do you manage the explosion of information and onslaught of increasing competition?
How do you sort through the abundance of opportunity and avoid getting burned out?
How do you maintain agility during todays tsunami of change?
Todays post is the second of three parts deriving insights and advice from three incredible, forward-thinking leaders: Beth Comstock, Sue Siegel, and Arianna Huffington. Todays post will focus on Sue Siegels advice.
Sue, Beth and Arianna addressed my 2017 Abundance 360 CEO Summit in a module called Exponential Leadership.(Be sure to read part one for eight excellent insights from Beth Comstock.)
Lets dive in...
Sue Siegel is the CEO of GE Ventures. She heads GE's growth and innovation business comprised of GE Ventures, GE Licensing and New Business Creation (NBC).
GE Ventures is the venture capital arm of General Electric that invests hundreds of millions of dollars in and partners with the entrepreneurial ecosystem across healthcare, energy, software, advanced manufacturing and lighting, and starts and grows companies via its New Business Creation unit.
Previously, Sue was the president of Affymetrix, and shes had 30 years of combined commercial experience. She's also on my board at Human Longevity Inc., which I'm very proud of, and GE is an investor in HLI.
1. Always be an ambassador for your team, innovation happens everywhere: As a leader, you must always be an ambassador for your team. Not only is it important for you to always reflect your companys values, but its also important that you constantly search for opportunities, tools, people, and ideas that would be valuable to your team. In other words, if you go to an event or conference, always be on the lookout for great opportunities for your team.
2. Issues within the team should be resolved within the team: Given the pace of change and complexity of leading a high-performance team, there is often a lot of stress and confusion with implementing team decisions. This can lead to gossiping or complaining outside of the group. Sue notes that your colleagues outside the team dont want to sit there and actually help you; instead, they just want to hear the gossip and spread it. This can be detrimental to productivity and team morale. Instead, don't start rumors, dont spread them, and if you have an issue, take it up immediately within the team and solve it there.
3. Once a decision is made, it is supported. Period. This is really important. Once a decision is made in a meeting, there must be no second-guessing of that decision after the fact. Sue explains, When we walk out of that room, and you've had all the chance to actually defend your position to make the decision, its time to start executing. That's it. If you need to change a strategy, use data from implementation to support your argument and bring it up in the next decision-making meeting.
4. Proactive problem management go directly to the source: As complexity increases, so too does the potential for conflict or confusion. As an exponential leader, you must be proactive in managing this. Sues strategy is simple and clear: Go to the source, directly to the source. Dont complain to managers or others before youve gone to the person first to resolve the conflict.
5. Assume noble intent: I love this one. Its important as a leader to trust your team and assume that they have the teams best interests in mind. Its remarkable what you are able to achieve when you assume noble intent. Ultimately, this goes back to hiring as well. You must ensure that you are hiring team players who are inspired by the companys mission and purpose.
6. Ambidextrous leadership (investor + operator thinking): Sue believes there is enormous value in pairing venture capital investor-type thinking with operator-type thinking. Being able to step back and analyze opportunities from an investors perspective can be a valuable tool in helping entrepreneurs and managers alike make better decisions. And for investors, thinking like an operator is so important to understand the businesses they are investing in and, more than that, to best leverage your resources to help the companies.
7. You cant delegate culture: This is absolutely critical for exponential leaders. Culture can make or break a company, and therefore it a) must be very high on a leaders list of priorities and b) must come from the top. Leaders cant delegate culture. Sue goes on, Leaders are the culture bearers, the torchkeepers of culture in our companies. They might have change agents, or those that actually help them amplify their culture, but the leader cannot delegate culture. This is a truth that a lot of us forget because we're so busy. Employees and teams really want to see it from their leaders. They want to hear the talk, they want to watch them walk the talk, all the time. Interestingly, while leaders cannot delegate culture creation, they can delegate culture keeping.
8. Purpose and passion: Purpose and passion drive people to do what they do. Sue explains, Our people are very motivated by a purpose. And you have to go recruit for that kind of person. Purpose fuels passion. Passion creates energy to deliver. It empowers people to believe they can. Purpose and passion actually help people unlock the potential they never knew they had. It is up to leaders to define the purpose and build a team around it.
Change is coming. Exponential leaders must prepare for it and embrace it.
Youve got to resolve conflict proactively, expect the best from your team, and fuel their energy to solve problems and create extraordinary results.
Image Credit: Shutterstock
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Regeneron, Sanofi, get ready to duke it out with Pfizer over a … – Endpoints News
Posted: at 2:45 am
Andrew Blauvelt, Oregon Medical Research Center
Sometime over the next few days or weeks, the FDA will likely hand Regeneron and Sanofi an approval for Dupixent (dupilumab), their groundbreaking IL-4/IL-13 inhibitor for eczema which a number of analysts have projected will go on to grab $4 billion-plus a year in annual sales. And theyll hit the market with some stellar new 16- and 52-week data from another Phase III study as they go up against Pfizers newly approved Eucrisa (crisaborole, targeting PDE4).
We knew last year that dupilumab had hit its marks in the pivotal SOLO trials as well as CHRONOS, setting it up as possibly the top drug launch slated for 2017. Over the weekend, investigators turned out with some new goal post data for CHRONOS that will do nothing to take the shine off of its big market predictions.
In CHRONOS, researchers recruited patients whose eczema wasnt controlled by topical therapies including corticosteroids. They were divvied up into three groups: weekly 300 mg doses of dupilumab with topical corticosteroids (TCS), once every two weeks doses with TCS or TCS alone.
In the new CHRONOS data reviewed at the annual meeting of the American Academy of Dermatology in Orlando over the weekend, investigators noted that the severe itching patients are afflicted by was reduced by 55% and 58% in the two drug arms after 16 weeks, compared to 29% of patients on TCS alone. And the disease score rating for patients dropped by 4 or more points among 77% of the patients in the drug arms compared to 37% of the placebo/topical corticosteroid group.
At 52 weeks the improvement in the itching score held steady at 54% and 56% in the drug ams and 27% in the placebo group. And the 4-point-plus improvement in disease score was maintained by 65% and 76% of the patients on drug, compared to 26% on only topical corticosteroids.
Compare that to the primary goal in the crisaborole study for mild to moderate eczema:
More crisaborole- than vehicle-treated patients achieved (Investigators Static Global Assessment) score success (clear/almost clear with 2-grade improvement; AD-301: 32.8% vs 25.4%, P=.038; AD-302: 31.4% vs 18.0%, P<.001), with a greater percentage with clear/almost clear (51.7% vs 40.6%, P=.005; 48.5% vs 29.7%, P<.001).
Thats what Pfizer paid $5.2 billion for when it acquired Anacor.
Together, these drugs are expected to make a crucial difference for a big group of patients who have limited treatment options. But Regeneron and Sanofi are clearly gunning for the lions share of the market with a much broader range of late-stage data to take to payers and physicians.
They need a clear win here. Their drug sarilumab was held up by the FDA last fall over manufacturing issues. And their big PCSK9play turned into an embarrassing defensive effort to beat back a judges ruling that their drug should be pulled due to patent violations.
These new results build upon previous positive Phase III monotherapy data. In the CHRONOS study, Dupixent used with topical corticosteroids showed significantly greater clearance of skin lesions and overall disease severity compared to topical corticosteroids alone, which are commonly prescribed for moderate-to-severe atopic dermatitis, said Andrew Blauvelt, president of Oregon Medical Research Center and principal investigator of the study. This study provides positive long-term data for Dupixent, which is important given atopic dermatitis is a chronic inflammatory disease. Additionally, the presentation highlights the critical role of IL-4 and IL-13 as drivers of this atopic condition.
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5 Skin Conditions That Get Worse with Stress (and How to Chill) – Shape Magazine
Posted: at 2:45 am
Yes, you can treat your stressed-out skin topicallyand you're going to want to treat each condition as you would normally, regardless of whether it's caused by stress or not, says Dr. Gohara. Foracne, eczema, and psoriasis, a gentle, non-soap cleanser is key. And for acne, topical meds including those with benzoyl peroxide, retinol, or salicylic acidwork best. Obv, most treatments are condition-specific and best prescribed by your derm.
But that's treating the symptoms of stress rather than the root cause. Stress management is more about what's going on inside rather than outside, which is why taking care of that mental stuff is a priority. It is clear that a skinmind relationship does exist. There's so much of an overlap between dermatologic conditions and psychiatric conditions that there's an entire subspecialty within dermatology called psychodermatology, says Dr. Brown.
When it comes to treating stress that sends your skin off the wall, you can do the same stuff that chills you out otherwise. There have been studies in which acupuncture and massage therapy have been shown to reduce flare-ups and improve the state of people's eczema and their psoriasis, says Dr. Brown. But anything else that reduces stressmeditation, exercise, yoga, deep breathing, a little #selfcarecan go a long way.
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Social phobia: Indication of a genetic cause – Medical Xpress – Medical Xpress
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March 9, 2017 In the Department of Genomics at the Life & Brain research center: Dr. Andreas Forstner (seated at the front), associate professor (Privatdozent) Dr. Rupert Conrad and psychologist Stefanie Rambau. Credit: Katharina Wislsperger/UKB-Ukom
People with social anxiety avoid situations in which they are exposed to judgment by others. Those affected also lead a withdrawn life and maintain contact above all on the Internet. Around one in ten people is affected by this anxiety disorder over the course of their life. Researchers at the University of Bonn have now found evidence for a gene that is believed to be linked to the illness. It encodes a serotonin transporter in the brain. Interestingly, this messenger suppresses feelings of anxiety and depressiveness. The scientists want to investigate this cause more precisely and are thus looking for more study participants. The results will be published in the journal Psychiatric Genetics.
Heart palpitations, trembling and shortness of breath: those who suffer from social phobia avoid larger groups. Verbal tests or everyday arrangements are filled with fear - after all, other people could make a negative judgement. Those affected often avoid such situations for this reason. Contact is often easier over social media or anonymously over the Internet. Social phobias are among the psychiatric disorders that are triggered simultaneously by genetic and environmental factors. "There is still a great deal to be done in terms of researching the genetic causes of this illness," says Dr. Andreas Forstner from the Institute of Human Genetics at the University of Bonn. "Until now, only a few candidate genes have been known that could be linked to this."
Individual base pairs can vary in the DNA
Together with the Clinic and Policlinic for Psychosomatic Medicine and Psychotherapy at the University Hospital Bonn, Dr. Forstner is conducting a study into the genetic causes of social phobia. The research team investigated the DNA of a total of 321 patients and compared it with 804 control individuals. The focus of the scientists lay on what are known as single nucleotide polymorphisms (SNPs). "There are variable positions in the DNA that can exist to various degrees in different people," explains Dr. Forstner.
The cause of genetic illnesses often lies in the SNPs. It is estimated that more than thirteen million such changes exist in the human DNA. The scientists investigated a total of 24 SNPs that are suspected in the widest sense of being the cause of social phobias and other mental disorders. "This is the largest association study so far into social phobia," says associate professor (Privatdozent) Johannes Schumacher from the Institute of Human Genetics at the University of Bonn.
Patients provided information about their symptoms
Over the course of the study, scientists at the Clinic and Policlinic for Psychosomatic Medicine and Psychotherapy at the University Hospital Bonn will ask the patients about their symptoms and the severity of their social phobia. Their DNA is also examined using a blood sample. Whether there is a link between the signs of the illness and the genes is being investigated by the scientists using statistical methods. The evaluation of the previously collected data indicated that an SNP in the serotonin transporter gene SLC6A4 is involved in the development of social phobia.
This gene encodes a mechanism in the brain that is involved in transporting the important messenger serotonin. This substance suppresses, among other things, feelings of fear and depressive moods. "The result substantiates indications from previous studies that serotonin plays an important role in social phobia," says associate professor (Privatdozent) Dr. Rupert Conrad from the Clinic and Policlinic for Psychosomatic Medicine and Psychotherapy. Medications that block serotonin reuptake and increase the concentration of the messenger in the tissue fluid in the brain have already long been used to treat anxiety disorders and depression.
Subjects can participate in expanded study
The scientists now want to investigate more closely what the links are between the DNA and social phobia. "In order to achieve this goal, we need many more study participants who suffer from social anxiety," says the psychologist and study coordinator Stefanie Rambau from the Clinic and Policlinic for Psychosomatic Medicine and Psychotherapy at University Hospital Bonn. Information about the study is available at http://www.SocialPhobiaResearch.de. "Those who take part will help to research social phobia. This is the basis of better diagnosis and treatment procedures in the future," says Stefanie Rambau.
Explore further: Psychotherapy normalizes the brain in social phobia
More information: Andreas J. Forstner et al, Further evidence for genetic variation at the serotonin transporter gene SLC6A4 contributing toward anxiety, Psychiatric Genetics (2017). DOI: 10.1097/YPG.0000000000000171
Anxiety in social situations is not a rare problem: Around one in ten people are affected by social anxiety disorder during their lifetime. Social anxiety disorder is diagnosed if fears and anxiety in social situations significantly ...
Previous studies have led researchers to believe that individuals with social anxiety disorder/ social phobia have too low levels of the neurotransmitter serotonin. A new study carried out at Uppsala University, however, ...
Social phobia is the most common anxiety disorder of our time. But the current treatment regimen for patients with this diagnosis has not proven very effective. Norwegian and British researchers spent 10 years studying alternative ...
Anxiety disorders affect approximately one in six adult Americans, according to the National Institute of Mental Health. The most well-known of these include panic disorder, post-traumatic stress disorder, obsessive-compulsive ...
(Medical Xpress) -- A recent study from the Centre for Emotional Health, Macquarie University, has found children with social phobia are judged as less attractive and are less liked by their peers, than children without anxiety ...
Researchers often observe inadequate parenting, a negative emotional climate and household chaos in families of children with ADHD. A research group at Goethe University Frankfurt and the universities of Bremen, Heidelberg, ...
A study led by Ravi Bansal, PhD, and Bradley S. Peterson, MD, of The Saban Research Institute of Children's Hospital Los Angeles, has found structural differences in the cerebral cortex of patients with depression and that ...
Growing up with a pet can bring social, emotional and educational benefit to children and adolescents, according to a new University of Liverpool study. Youngsters with pets tend to have greater self-esteem, less loneliness, ...
Giving people time to think about cooperating on a task can have a positive effect if they are big-picture thinkers, but if they tend to focus on their own, immediate experience, the time to think may make them less cooperative, ...
There is no added benefit to using ketamine over a standard anaesthetic during electroconvulsive therapy (ECT) according to new research from the University of Aberdeen.
People who suffer from depression should participate in yoga and deep (coherent) breathing classes at least twice weekly plus practice at home to receive a significant reduction in their symptoms.
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Mutations in CWC27 result in spectrum of conditions – Baylor College of Medicine News (press release)
Posted: at 2:44 am
An international team of researchers has discovered that mutations in the human gene CWC27 result in a spectrum of clinical conditions that include retinal degeneration and problems with craniofacial and skeletal development. The results appear in the American Journal of Human Genetics.
CWC27 is a new disease-associated gene, said co-senior author Dr. Rui Chen, associate professor of molecular and human genetics at Baylor College of Medicine.
One of the goals of the Chen lab is to identify genes involved with human retinal disease, such as retinitis pigmentosa, a condition characterized by progressive development of night blindness and tunnel vision, sometimes from the early age of 2. Retinitis pigmentosa is the most common inherited disorder of the retina; it affects nearly 1 in 4,000 people, and more than 1 million are visually impaired around the world due to this untreatable disease.
In our search for genes linked to retinitis pigmentosa, we identified a patient with the condition more than two years ago, said co-first author Mingchu Xu, graduate student in molecular and human genetics in the Chen lab. We identified a frameshift mutation in CWC27. The patient did not have other conditions in addition to the vision problems. To study the condition, we mimicked the human mutation in a mouse model, and at 6 months of age the mice showed retinal degeneration and no other conditions, just as we had observed in the human patient.
CWC27 is one of more than 100 genes that participate in the formation and function of the spliceosome, a molecular machine that is involved in the correct expression of the proteins that carry out the functions of all the cells in the body. Until now, most disease-associated genes of the spliceosome had been involved in two non-overlapping conditions. For instance, mutations in certain proteins of the spliceosome cause syndromes that involve mainly craniofacial and skeletal conditions, while mutations in other spliceosome genes result only in retinitis pigmentosa. CWC27 seemed to belong to the second group of genes.
Surprising results
Interestingly, our collaborator Dr. Daniel Schorderet, director of the Institute for Research in Ophthalmology in Switzerland and co-senior author of the paper, was working with patients who have mutations in CWC27 and present with more severe clinical conditions than our patient, including craniofacial and skeletal problems in addition to problems with vision, Xu said.
When we looked at the clinical characteristics of all the patients, we did not anticipate that they would have mutations in the same gene. Only when we looked at the genes did we realize that the spectrum of clinical characteristic in the patients was the result of various mutations in the same gene, CWC27, Chen said.
By applying exome sequencing to multiple families and modeling the disease in two mouse models the researchers were able to appreciate the spectrum of clinical conditions that mutations in the same gene can cause.
This is the first time a mutation of a gene in the spliceosome has been described to result in an entire spectrum of clinical conditions, Xu said. To explain why our patient presented only with vision problems, we hypothesized that the mutation in our patients CWC27 was milder than those of other patients. By analyzing the results on mouse models and patient samples, we found that the mutant gene in our patient probably retains a residual function, while the genes in the patients of the other groups have a more severe loss of function.
This study also shows the power of collaboration within the genetics community when looking for new disease-associated genes, Xu said. Initially, we only identified one patient and then we collected more cases via two platforms, GeneMatcher and the European Retinal Disease Consortium. We would not have been able to present this interesting story without the contributions of researchers from nine countries. With exome sequencing accessible to more patients and researchers, these platforms will most likely speed up the process of finding the genetic causes of human diseases.
Seea complete list of authors and their affiliations and the financial support for this project.
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