Monthly Archives: July 2017

Delays for DNA, fingerprint results continue to vex Nebraska State Patrol Crime lab. – NET Website

Posted: July 13, 2017 at 6:47 am

Inside the Crime Lab facility opened in 2015.

A crime lab tech demonstratesDNA evidence processing.

The wait time for results on DNA testing was recently calculated by the lab to be 211 days. The response on rush cases for DNA evidence is at the level most jurisdictions consider acceptable: 30 days or less.

Slow turnaround times for processing requests for an increased number of latent fingerprints also have dogged the facility. From January through June 2017 the crime lab reported aturnaround time of 197 days. Response time for trace evidence assignments was 168 days.

The lab's newly released quarterly report showsturnaround times for toxicology and drug testingare in line with best practices for evidence processing. Ballistics and tool mark tests were waiting for over 90 days.

We've been fairly stable compared to where we were last year regarding most of our examination type, Zilley said.

In the first half of 2017 the lab processed 2,626 pieces of evidence. If the workload maintains that pace,the lab will match the record number of assignments handled the previous year, 5,500 individual pieces of evidence.

Delays in DNA and fingerprint evidence concern both prosecutors and attorneys representing those accused of crimes.

On the most basic level the turnaround time for DNA evidence is an access to justice issue, said Tricia Bushnell, the director of the Midwest Innocence Project, an organization dedicated to identifying cases where individuals have been wrongly convicted of crimes.

This whole hurry up and wait component really adds a lot of stress to both defendants and victims, Bushnell said. When we think about something that can give a victim definitive knowledge, DNA can do that.

Last year scientific analysis of crime scene evidence at the Lincoln-based labwasconducted on behalf of 156 law enforcement agencies.

The state opened the new $9 million crime lab headquarters near the Lincoln airport in October of 2015. It was hoped it would help address persistent delays in getting test results to police agencies.

When the building was unveiled to the states news media, Governor Pete Ricketts said it would allow staff to be more efficient in helping out those agencies. Ricketts stated the improved technology and additional space for lab workers would help law enforcement do a better job of catching the bad guys and putting them away.

Bradley Rice, the recently ousted superintendent of the state patrol accompanied the governor and said he was very hopeful backlogs of evidence waiting to be processed could be reduced across the board to only about a month.

In some categories that promise has been met.

The new facility has been tremendous, Zilley told NET News, crediting additions to equipment and staff as well as a more efficient layout with keeping goals in some areas on target. Currently the lab maintains a staff of 26 technicians and support staff.

Those people have worked so hard and put in quite a bit of overtime, in order to get their turnaround time down, Zilley said. Approximately 30 days is something that we have found submitting agencies are happy with, the courts are happy with.

It has been a tremendous relief for all of us to be able to get that turnaround time down, she added.

Whats not going according to plan is the sheer volume of requests for evidence processing from police agencies all over the state. Since the new facility opened, work load has jumped 16 percent overall and submissions to the biology section have shown an unprecedented increase, especially the jump in requests for DNA processing.

Twenty percent is a lot, Zilley said. Clearly, that's a large caseload. There's a lot of pressure to try to get it done.

The biology section provides DNA testing for nearly all of the law enforcement agencies in Nebraska, and is considered a vital part of investigations of violent crimes, including murder and sexual assault.

Demand for DNA testing outstrips increases in violent crime rates reported in Nebraska, meaning something other than more crime is driving the increased demand.

Zilley declined to speculate on what is behind the increase.

We don't have really any control over what comes to us. We don't necessarily know why it's suddenly coming to us, she said, noting DNA testing over the last number of years has trended up in Nebraska, reflecting national trends.

The National Institute of Justice reports the demand for DNA testing is rising because more biological samples are collected at crime scenes and state laws created DNA data bases of samples drawn from convicted felons and sex offenders.

Improved training and awareness have permitted smaller agencies to collect and preserve usable DNA evidence. County attorneys are more likely to expect biological evidence as a routine part of their prosecutions.

Filling the allotted number of lab technician jobs has helped other sections of the crime lab to meet turnaround time goals.

Controlled substances (drug testing) is doing great, Zilley said. Their turnaround time now is about 30 days. We added an additional person to that section last year. He's completed his training, so now we are full staff. Everybody trained, everybody working cases.

Filling a position in the section testing firearms and tool marks helped meet the demand for ballistics testing. Theres hope filling a slot in the latent fingerprint section will get similar results.

When the new crime lab was unveiled to the public Governor Ricketts was asked if he would add additional technicians to help reduce the backlog. He said hed evaluate staffing after seeing how the improved facility improved the work flow.

Zilley responded cautiously when asked about requesting funds for new lab technicians to meet the increased demand for their services.

More people would be great but, of course, we're a state agency and lots of state agencies need people, and the state patrol needs people, Zilley said. There's only so many resources to go around.

Any decisions about staffing will wait for a new state patrol superintendent on the heels of the old boss being fired by the governor.

Both prosecutors and defense attorneys would like to see the state patrol reduce the wait time for DNA results.

Nobody likes the idea that there is truth there to be found, but we dont have the resources to get to it, said Bushnell of the Innocence Project, noting its a problem facing crime labs nationwide.

I dont think anyone thinks its going to be instantaneous, but people definitely want to have things worked when they come in, but the reality is there is such a backlog in so many states because its a resource issue. Labs dont have enough personnel to handle the amount of DNA work that is coming it.

Lab Director Zilley says she and her staff want to cut that turn-around time significantly.

We do everything we can to try to make the most of what we have.

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Delays for DNA, fingerprint results continue to vex Nebraska State Patrol Crime lab. - NET Website

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Video stored in live bacterial genome using CRISPR gene editing … – New Scientist

Posted: at 6:46 am

Photos from Eadweard Muybridges study of a galloping horse have been recorded in bacterial DNA

Eadweard Muybridge/The LIFE Picture Collection/Gett

By Douglas Heaven

Life is an open book and were writing in it. A team at Harvard University has used the CRISPR genome-editing tool to encode video into live bacteria demonstrating for the first time that we can turn microbes into librarians that can pass records on to their descendants and perhaps to ours.

The technique could even let us create populations of cells that keep their own event logs, making records as biological processes like disease or brain development happen.

DNA is one of the best media for storing data we know of. Researchers have already crammed large amounts of information from books to digital images into tiny amounts of biological material. In theory, a gram of single-stranded DNA can encode 455 exabytes, or roughly 100 billion DVDs.

Most previous DNA storage work has used artificial DNA: digital information is translated into a DNA sequence that is then synthesized.

However, using CRISPR lets you cut and paste the digital information directly into the DNA of a live organism, in this case a large population of E. coli.

Bacteria use the CRISPR/Cas9 system to record information in their DNA about viruses they encounter. And this machinery has been co-opted by researchers to enable us to precisely edit genomes.

In bacteria, each new entry gets stored upstream of the last one, which makes it possible to read off a history of events in the order they happened. Previous groups have created lifelogging cells by using CRISPR/Cas9 to mark the genome when a particular event occurs. But these marks just provide a tally of how many times something happens.

Seth Shipman at Harvard University and his colleagues have now used a version of CRISPR with a different enzyme, called CRISPR/Cas1-Cas2. This let them add a message to the genome rather than simply cut a notch.

The message was a recorded image of a human hand and five images showing a galloping horse, taken from Eadweard Muybridges 1878 photographic study of the animals motion, which has since been animated.

Seth Shipman

To get the DNA sequences encoding this data inside the cells, the team applied an electrical current that opened channels in the cells walls and the DNA flowed in. Once inside, CRISPR got to work.

To read the data back again, the team sequenced the DNA of more than 600,000 cells. The large number is necessary because most cells will not have edited their genome entirely accurately. Every cell isnt going to acquire every piece of information we throw at it, says Shipman. The more cells that are sampled, the better the reconstruction of the data. Fortunately, with modern sequencing tools, reconstruction is quick.

The five frames of a horse in motion showed that it is possible to capture data chronologically and replay them as a video. You get a physical record of events over time, says Shipman. For a long time we wanted to have some way of storing timing information inside cells, says Shipman. The CRISPR system is perfectly adapted to that.

This is a really neat paper, says Yaniv Erlich at Columbia University in New York. The team didnt store that much data and it is not clear that the CRISPR technique can compete with the storage capacity of synthetic DNA. But inserting information into living cells opens up a lot of possibilities, he says.

For a start, it lets you add to or change the stored information later. And because the data is written into the bacterial genomes, it gets passed down between generations. Mutations happen, but not nearly as many as you think, says Shipman certainly not enough to corrupt the data stored across a large population of cells.

Storing data in bacteria could even be a way to make important information survive a nuclear apocalypse. You could useDeinococcus radiodurans, a species that maintains its genome in extreme radiation conditions, says Erlich.

Shipman wants to turn cells into recording devices that document what takes place inside themselves. He is excited about the possibility of keeping a log book of events inside a living brain as it develops, showing how different brain cells acquire their distinct identities.

Its hard to understand what events make brain cells fully defined, says Shipman. You cant easily get in there to take a look. Taking a brain apart disrupts the whole process.

You could also get a cell to diarise what happens as it changes from healthy to diseased. Now that would be an account worth reading.

Journal reference: Nature, DOI: 10.1038/nature23017

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Genome project promises to root out your origins – Hindu Business Line

Posted: at 6:46 am

IISc division will lead drive to map 1,000 genomes

New Delhi, July 12:

Indian scientists are embarking on an ambitious programme to map thousands of genomes from the countrys many ethnic communities.

The initiative, the first of its kind from India, will help identify genes and genetic variations that underlie many diseases, particularly hereditary ailments, for which there is no cure currently.

The decision to launch the project was taken at a meeting of top genome scientists at the Centre for Brain Research (CBR), which is an autonomous body at the Indian Institute of Science (IISc), Bengaluru.

The CBR, set up with liberal funding from the Pratiksha Trust of Infosys co-founder Kris Gopalakrishnan and his wife Sudha Gopalakrishnan, has promised to fund the mapping of at least 1,000 genomes from across the country, said a scientist, who requested anonymity. Sequencing of each genome is expected to cost about $1,000.

The scientists rued that India never felt it important to map the genomes of its citizens. A country like India, which has so much ethnic diversity, should have mapped at least 10,000 genomes by now. I am surprised that it wasnt a priority for the authorities even now, the scientist said.

Genetic variations in individuals are important in health and disease treatment and are useful tools to study evolution, migration and population history of various groups of individuals.

According to some estimates, India has more than 4,000 well-defined anthropological groups. Many of these groups shunned inter-marriage for centuries due to cultural and societal reasons.

This, in turn, has led to creation of different population groups with their own genetic make-up.

Apart from identifying subtle genetic variations that set Indians apart from the Caucasian or African population, building such a genetic catalogue would help unravel genes responsible for genetic disorders.

Every year, over 1lakh babies in India are born with congenital diseases, but there is very limited understanding of the genes involved.

Currently, there is no Indian genome available in the public domain, said Bratati Kahali, a researcher with CBR. The genome project, she says, will help address this lacuna.

We are really excited to be part of this venture, said Dinabandhu Sahoo, Director of the Institute of Bioresources and Sustainable Development (IBSD) at Imphal. IBSD, he said, would gather samples from the North-East, a region with over 220 ethnic groups.

Apart from IBSD, the Centre for Cellular and Molecular Biology in Hyderabad, LV Prasad Eye Hospital (Hyderabad), the Rajiv Gandhi Centre for Biotechnology (Thiruvananthapuram) and IIT Jodhpur will participate in the ambitious project.

(This article was published on July 12, 2017)

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New Analysis of Rare Argentinian Rat Unlocks Origin of the Largest Mammalian Genome – Laboratory Equipment

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New biological information gleaned from the red vizcacha rat, a native species of Argentina, demonstrates how genomes can rapidly change in size.

Researchers from McMaster University set out to study this particular species because its genome, or its complete set of DNA, is the largest of all mammals, and appears to have increased in size very rapidly.

The rats genome is roughly two-and-a-half times as large as the human genome, including 102 chromosomes versus 46 for humans, and is about twice as large as one of its closest relatives, the mountain vizcacha rat. The most recent common ancestor of these species existed only about five million years ago.

This genomic transformation is striking because it happened over a very short period of time in evolutionary terms, says Ben Evans, a biologist at McMaster and lead author of the new research published in the journal Genome Biology and Evolution.

The mechanism behind that growth has caused much debate among scientists, some of whom suggest the rapid expansion is due to whole genome duplication when its entire set of DNA doubles.

Whole genome duplication is relatively common in some groups such as plantsit occurred in ancestors of corn, tobacco, potatoes, and many other flowering plants, say researchers.

Others argue the rats rapid genome expansion is due to repetitive DNAbits of DNA that are repeated many times in a genomecoupled with chromosomal fissioning, a process where one chromosome divides into two or more over evolutionary time.

To settle the debate, researchers compared and contrasted genomic datasets from the red vizcacha rat and the mountain vizcacha rat.

Their analysis suggests the genome grew quickly due to the expansion of a diverse set of highly repetitive elements, and they found no strong evidence of genome duplication.

This is interesting because these same mechanisms the expansion of repetitive DNA operate in humans and contribute to genomic baggage or extra DNA. This can influence disease through the interruption of gene function, says Evans.

Still, many questions remain. Researchers hope to further characterize the nature of those repetitive elements. For example, what are they and why did they expand? And are they still expanding?

Researchers also plan to explore whether or not this genetic evolution played a part in the rats high tolerance for a highly saline diet. This species can feed on extremely salty plants that grow in its desert habitat, whereas the mountain vizcacha rat cannot tolerate the same diet.

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Common eczema triggers and what you can do about them – AOL UK

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By Rachel Burge 12 Jul 2017, 21:37

If you have eczema, you'll know that some things can make it worse. Read on to learn what causes eczema, common triggers that cause a flare up, and what you can do about them.

See also: Scientists working on eczema treatment turn to body's natural defences

See also: Foods that beat dry skin

What causes eczema? Eczema is a scaly, itchy rash that can be red and sore. It's known to be hereditary, so if your parents have eczema, or you have a brother or sister with the condition, you're more likely to develop it. It's not infectious, so it can't be passed on through close contact.

Numerous things can cause a flare-up, and these vary from person to person. Typical triggers include:

1. Washing in hot water Skin that's already dry and sensitive isn't able to retain much moisture, so it's important not to dry it out further by having hot baths or showers. If you prefer to have a bath, don't stay in too long and keep the water lukewarm. Some people find that adding a handful of colloidal oatmeal (a different type to breakfast cereals which shouldn't be eaten) to the water can help to soothe and soften the skin.

Once you're done, gently pat your skin - without rubbing - until damp, and then apply plenty of cream to seal in moisture. If you're allergic to wool, avoid lotions that contain lanolin as it will irritate your skin. If you don't have an allergy, lanolin is likely to help.

If the skin on your hands is particularly dry, you may need to apply cream or a prescribed steroid ointment each time after washing. Speak to your GP about trying a stronger steroid ointment if the creams aren't working,

2. Allergens People with eczema are susceptible to environmental allergens. Pet hair, dust mites, and mould are the most common offenders and can all cause a flare-up. Be sure to dust and vacuum regularly (you can buy vacuums that are designed to combat allergens) and opt for wooden floors and blinds rather than thick carpets and drapes.

It may be worth investing in anti-allergy bedding and be sure to wash bedding regularly in hot water.

Ask for help with household chores if cleaning makes your symptoms worse.

3. Getting hot and sweaty Whether you're working out in the gym or having fun in sun, getting hot and sweaty can play havoc with your eczema.

Exercise in an air-conditioned gym or studio rather than outdoors, and gently dab off sweat rather than rubbing. Swimming can be a good option (just steer clear of the hot tub!) but the chlorine may be irritating to some. Remember to have a lukewarm shower and moisturise well afterwards.

In hot weather, avoid going out in the hottest part of the day and cover up with loose cotton clothing. Sunburn will inflame the skin and make the condition worse, so take care in the sun. If sunscreen irritates your skin, try opting for mineral versions, like zinc oxide or titanium dioxide, or use sunscreens formulated for the face on your body.

4. Clothing Clothing made from natural fibres are better than synthetic materials, like polyester and nylon. Opt for loose, breathable cotton and avoid wearing anything scratchy next to the skin, such as wool or mohair. Before wearing new clothes, it's a good idea to wash them at home with fragrance-free detergent this will ensure any dyes or chemicals are removed.

5. Chemical irritants When washing clothes, scented fabric softeners and fragranced washing powder are best avoided. Instead, opt for detergent that's formulated for babies or those with sensitive skin. Don't use more than the recommended amount and rinse clothes twice if necessary.

When it comes to shower gel and shampoo, opt for a non-soap cleansers that are pH neutral and fragrance-free.

6. Food allergies and sensitives Research has found a link between sensitivity to cow's milk and eczema symptoms, particularly in babies and children. Peanuts, soy, wheat, fish, and eggs can also be an issue. Talk to your GP or consult a dermatologist before eliminating any foods from your own, or your child's diet.

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Alisha Bridges: Intelligent, beautiful, bold, and living with psoriasis – Rolling Out

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Alisha Bridges (Photo credit: Steed Media Service)

Beautiful and statuesque, you could easily assume Alisha Bridges is a model. She emanates a glow from within that lights up the room, and is the epitome of confidence. When introducing herself, she says with a huge smile: Hi, ImAlisha Bridges. I am a psoriasis patient advocate and I am a blogger for beingmeinmyownskin.com. Bridges graciously took a few moments to speak candidly about her battle with the disease.

How old were you when you were diagnosed with psoriasis? I was first diagnosed at the age of 7 years old. I had chicken pox but my grandmother noticed that the chicken pox scars that you normally get from scratching didnt look normal. They just started to kind of crust over. She took me to a dermatologist who then diagnosed me with psoriasis.

So is this a typical disease for children at that age to contract, or is this out of the ordinary? Its not a typical disease at all. The way that psoriasis works, its something that can be environmental, it can be genetics, it can be an allergic reaction, and for some people living with the disease, they dont know why their bodies start to fight against them. Ill tell you psoriasis is not contagious. Its your immune system that is over reactive and your body believes that you need to create new skin cells, but you really dont need them. For someone who doesnt have psoriasis, their skin replicates in 28 days and then flakes off. For someone living with psoriasis, this process happens in three days and your body is unable to shed the skin and thus it builds on top of the good skin.

What type of treatments have you been on? I have been literally on every type of treatment you can think of for psoriasis. Ive been on topical cream phototherapy pills Ive done biologics, which are injections that you give yourself. Ive literally tried everything on the market for psoriasis trying to clear it. Ive even tried some holistic treatments as well.

What has been the most painful part of having this disease? The different encounters Ive had with people while having this disease. Theres a misconception that psoriasis is contagious. Its a very visible disease, so its not something you can hide. I remember when I was in my early 20s, this guy comes up to me and he literally says, Youre a pretty girl, but you have ugly skin. The hardest thing for me to overcome internally was being able to love myself regardless of the disease, and being able to find self-esteem. To be able to know that Im worthy regardless of living with this disease. Just really accepting myself.

What can we expect from you in the future? Right now, Im currently attending Georgia State University and taking classes to apply for physicians assistant school. I want to help patients living with skin conditions in a greater way and I know that I couldnt do that unless I added some expertise to my belt. Next month in August, I will be volunteering at Camp Discovery, a camp for kids with skin conditions. I volunteered at the camp last year and it was eye opening for me. Camp Discovery is designed for kids with all kinds of skin conditions, not just psoriasis. The Walk to Cure Psoriasis is happening in October. Weve been doing it here in Atlanta for the last three to four years, and so far, weve raised about 100 thousand dollars for people living with psoriasis

Bridges went on to add that until recently, she had never enjoyed some of the simple pleasures that others take for granted, such as wearing shorts, a bathing suit, or even getting a pedicure due to her psoriasis. Now that she is plaque free, she has found the confidence to do things that previously terrified her, such as going pantyhose free for the first time in her life. Her newfound dedication to living her life boldly has even led her to venture into doing stand-up comedy at the Laughing Skull in Atlanta. Bridges admits that she still wrestles daily with her fears that the medication may fail and the disease may come back, however, she has decided to live her best life and is determined to spend her life helping others who are living not only with psoriasis but other skin disordersas well.

You can check out Bridges at http://www.beingmeinmyownskin.com or at @AlishaMBridges on Twitter and Instagram, and Alisha Bridges on Facebook or contact the National Psoriasis Foundation for more information on how you can help.

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FDA Panel Recommends Approval for Gene-Altering Leukemia Treatment – New York Times

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We believe that when this treatment is approved it will save thousands of childrens lives around the world, Emilys father, Tom Whitehead, told the panel. I hope that someday all of you on the advisory committee can tell your families for generations that you were part of the process that ended the use of toxic treatments like chemotherapy and radiation as standard treatment, and turned blood cancers into a treatable disease that even after relapse most people survive.

The main evidence that Novartis presented to the F.D.A. came from a study of 63 patients who received the treatment from April 2015 to August 2016. Fifty-two of them, or 82.5 percent, went into remission a high rate for such a severe disease. Eleven others died.

Its a new world, an exciting therapy, said Dr. Gwen Nichols, the chief medical officer of the Leukemia and Lymphoma Society, which paid for some of the research that led to the treatment.

The next step, she said, will be to determine what we can combine it with and is there a way to use it in the future to treat patients with less disease, so that the immune system is in better shape and really able to fight. She added, This is the beginning of something big.

At the meeting, the panel of experts did not question the lifesaving potential of the treatment in hopeless cases. But they raised concerns about potentially life-threatening side effects short-term worries about acute reactions like those Emily experienced, and longer-term worries about whether the infused cells could, years later, cause secondary cancers or other problems.

Oncologists have learned how to treat the acute reactions, and so far, no long-term problems have been detected, but not enough time has passed to rule them out.

Patients who receive the treatment will be entered in a registry and tracked for 15 years.

Treatments involving live cells, known as biologics are generally far more difficult to manufacture than standard drugs, and the panelists also expressed concerns about whether Novartis would be able to produce consistent treatments and maintain quality control as it scaled up its operation.

Another parent at the meeting, Don McMahon, described his son Connors grueling 12 years with severe and relapsing leukemia, which started when he was 3. Mr. McMahon displayed painful photographs of Connor, bald and intubated during treatment. And he added that chemotherapy had left his son infertile.

A year ago, the family was preparing for a bone marrow transplant when they learned about the cell treatment, which Connor then underwent at Duke University. He has since returned to playing hockey. Compared with standard treatment, which required dozens of spinal taps and painful bone marrow tests, the T-cell treatment was far easier to tolerate, Mr. McMahon said, and he urged the panel to vote for approval.

A third parent, Amy Kappen, also recommended approval, even though her daughter, Sophia, 5, had died despite receiving the cell treatment. But it did relieve her symptoms and give her a few extra months. Sophias disease was far advanced, and Ms. Kappen thought that if the treatment could have been given sooner, Sophia might have survived.

We hope that more families have a longer time with their children fighting this evil disease, and our children deserve this chance, she said.

The treatment was developed by researchers at the University of Pennsylvania and licensed to Novartis.

Use will not be widespread at first because the disease is not common. It affects only 5,000 people a year, about 60 percent of them children and young adults. Most children are cured with standard treatments, but in 15 percent of cases like Emilys and Connors the disease does not respond, or it relapses.

Analysts predict that these individualized treatments could cost more than $300,000, but a spokeswoman for Novartis, Julie Masow, declined to specify a price.

Although the figure may seem high, people with cancer often endure years of expensive treatment and repeat hospital stays that can ultimately cost even more.

Because the treatment is complex and patients need expert care to manage the side effects, Novartis will initially limit its use to 30 or 35 medical centers where employees will be trained and approved to administer it, the company said.

As to whether the treatment, known as CTL019 or tisagenlecleucel (pronounced tis-a-gen-LEK-loo-sell), will be available in other countries, Ms. Masow said by email: Should CTL019 receive approval in the U.S., it will be the decision of the centers whether to receive international patients. We are working on bringing CTL019 to other countries around the world. She added that the company would file for approvals in the European Union later this year.

By late November 2016, 11 of the 52 patients in the study who went into remission relapsed. Twenty-nine were still in remission. Eleven others had further treatments, like bone marrow transplants. One patient was not available for assessment. Three who had relapses died, and one who did not relapse died from a new treatment given during remission. The median duration of remission is not known because it has not been reached: Some patients were still well when last checked.

Researchers are still debating about which patients can safely forgo further treatment, and which might need a bone marrow treatment to give the best chance of a cure.

The treatment requires removing millions of a patients T-cells a type of white blood cell often called soldiers of the immune system and genetically engineering them to kill cancer cells. The technique employs a disabled form of H.I.V., the virus that causes AIDS, to carry new genetic material into the T-cells to reprogram them. The process turbocharges the T-cells to attack B-cells, a normal part of the immune system that turn malignant in leukemia. The T-cells home in on a protein called CD-19 that is found on the surface of most B-cells.

The altered T-cells are then dripped back into the patients veins, where they multiply and start fighting the cancer.

Dr. Carl H. June, a leader of the University of Pennsylvania team that developed the treatment, calls the turbocharged cells serial killers. A single one can destroy up to 100,000 cancer cells.

Because the treatment destroys not only leukemic B-cells but also healthy ones, which help fight germs, patients need treatment to protect them from infection. So every few months they receive infusions of immune globulins.

In studies, the process of re-engineering T-cells for treatment sometimes took four months, and some patients were so sick that they died before their cells came back. At the meeting, Novartis said the turnaround time was now down to 22 days. The company also described bar-coding and other procedures used to keep from mixing up samples once the treatment is conducted on a bigger scale.

Michael Werner, a lawyer and expert on gene and cell technologies and regulation, and a partner at Holland and Knight in Washington, said that results so far proved that T-cell treatment works.

The fact that it can be done means more people will go into the field and more companies will start developing these products. He added, I think were in for really exciting times.

A version of this article appears in print on July 13, 2017, on Page A1 of the New York edition with the headline: F.D.A. Panel Urges New Living Drug To Fight Cancer.

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Genetics playing a growing role in intersection of nutrition and health – Baltimore Sun

Posted: at 6:44 am

Dr. Erin Kinney used to assess patients nutritional needs with an analysis of their eating habits and family and medical histories. Nowadays the Arnold naturopathic doctor is delving deeper and also analyzing her patients' genetic makeup.

She is part of a growing number of dieticians, nutritionists and holistic doctors practicing nutritional genetics, or looking at how variations in genes can modify the affects of nutrients on health. The health care providers are using the information to help patients figure out which foods they should eat or avoid, and that best suits their biological makeup.

"We are now learning that maybe you have a certain genetic disposition to not making enough of a certain enzyme," said Kinney, who is also president of the Maryland Naturopathic Doctors Association. "It is really changing the way we are going to be able to tailor our treatments for patients."

Dieticians for years have used genetics on a limited basis, looking at mutations in one particular gene that may make patients prone to disease or more likely to have certain health conditions. For example, patients who are lactose intolerant can't break down the lactose found in dairy products because of a mutation in the lactose gene. So they suffer with gas and other uncomfortable digestive problems after drinking milk or eating cheese or ice cream.

The sequencing of the human genome - or the mapping of every gene in the body - has enabled not just dieticians, but all doctors, to use genetics in a more comprehensive way. A doctor can look at a patient's entire genetic makeup to determine, for instance, if they have multiple gene mutations that would make them more prone to obesity or cardiovascular disease.

Algerina Perna / Baltimore Sun

Most human genes are the same from person to person, but some have variations. The most common type of variation is known as a SNP (pronounced "snips"), or single nucleotide polymorphisms, and accounts for difference in physical characteristics of people, including eye and hair color or blood type. Different SNPs can also determine if someone will be more prone to developing certain diseases.

"The genome is the gold mine where genes can be targeted and we can learn more about how nutrients can play a role in people's health," said Braxton Mitchell, a genetic epidemiologist at the University of Maryland School of Medicine who studies the genetics of complex diseases.

But Mitchell and others caution the field is still emerging and that ongoing research is needed to sort out the many ways genetics could be used to guide nutrition and food choices.

The Academy of Nutrition and Dietetics wrote a position paper in 2014, published in the organization's journal, that said nutritional genomics is not ready for widespread use.

"The practical application of nutritional genomics for complex chronic disease is an emerging science and the use of nutrigenetic testing to provide dietary advice is not ready for routine dietetics practice," the position paper said. "Registered dietitian nutritionists need basic competency in genetics as a foundation for understanding nutritional genomics; proficiency requires advanced knowledge and skills."

A spokesman for the organization said it still stands behind that statement.

"It is pretty complicated right now because genes are complicated," said Ginger Hultin, a dietician and spokeswoman for the Academy of Nutrition and Dietetics. "It is not generally enough to just look at a single gene variation. There is so much to look at on genes and you also have to consider a person's lifestyle and how they interact with the environment."

The Maryland University of Integrative Health held its first ever symposium last month to encourage what they called "knowledge sharing" on the interaction between genetics and dietary factors. The conference, held in partnership with the Maryland Naturopathic Doctors Association, was focused on giving health care providers practical advice on how to incorporate nutritional genomics testing, counseling and treatment into clinical practice.

Christy Williamson, an adjunct professor at the university who also owns a genetic nutritional company, said that variations in genes might mean that two people with diabetes might need different diets customized for their biological makeup. Other people might have a gene variation that causes them to need more exercise to get enough molecular oxygen to lose weight.

There is also the possibility that a mutation might not have any affect on the body.

"Certain things are epigenetically activated," Williamson said. "That doesn't mean everybody who has a gene variation will get that particular disease. Genetics kind of loads the gun and the environment pulls the trigger."

Lifestyle can also offset the affects of the gene variation. If your gene makes you more prone to gain weight, for instance, extra exercise could help you fend off weight gain.

"You can have bad genes, but if you have a good lifestyle you can change the way your genes are expressed," Kinney said. "Your body can get back into balance despite that your body has these gene mutations."

Companies like 23andMe, Vitagene and Nutrigenomix will map a patient's genome using a swab of saliva. Kinney then uses a system called Opus 23 Pro that analyzes the data.

Kristen Kissik, an Annapolis dance and yoga instructor, was one of those patients who had her genome analyzed. Kissik wanted to make sure she was doing everything she could to ensure she had the most optimal health. She had been eating foods she knew would help reduce inflammation, improve her thyroid functions and ease her gluten sensitivity.

"The stuff I got almost affirmed my intuition," Kissik said of the results her genome analysis. "I know I had an issue and it is in my genes."

Mitchell, the University of Maryland epidemiologist, believes nutritional genomics has the potential to one day help decide which diets are best for people. He predicts it could also eventually lead to new treatments for various diseases and medical conditions. But more research needs to be done to validate the potential benefits.

"There is a lot going on in the field," he said. "We have to be skeptical when see results from early studies. We want to see results repeated before we believe them."

amcdaniels@baltsun.com

Twitter.com/ankwalker

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Root of cardiac fibrosis defined – Medical Xpress

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July 13, 2017 by Nora Dunne Localization of pro-fibrotic hormones in heart muscle cells (green), which synthesize and release transforming growth factor-beta (red) following cardiac injury. Nuclei are shown in blue. Credit: Northwestern University

Northwestern Medicine scientists have identified a novel molecular mechanism that regulates scar formation in the heart, a common manifestation of aging and nearly every form of heart disease. The discovery was published in the journal Circulation.

The scientists showed that heart muscle cells called cardiomyocytes are a principal source of the molecular signals that drive scarring in the heart, a process known as cardiac fibrosis.

"Historically, these signals were thought to arise from other cell types in the heart," explained Panagiotis (Peter) Flevaris, MD, PhD, '12, '17 GME, instructor of Medicine in the Division of Cardiology and first author of the paper. "We also identified the gene that serves as the master regulator of the synthesis and release of pro-fibrotic signals from heart muscle cells across different species."

First, Flevaris and colleagues showed that a familial mutation in that gene, which encodes the protein plasminogen activator inhibitor-1 (PAI-1), leads to spontaneous cardiac fibrosis in otherwise healthy individuals in an Old Order Amish community. The findings in the human population confirmed previous observations in mice lacking the gene for PAI-1.

Importantly, the scientists found that a protein called bone morphogenetic protein 7 (BMP7) can prevent the generation of fibrotic signals by cardiomyocytes and may be able to serve as a future therapy for cardiac fibrosis.

"Tissue fibrosis is the leading cause of organ failure, but persists as one of the most pressing global health problems due to lack of effective pharmacotherapies. Currently, the only cure for cardiac fibrosis is heart transplantation," said Flevaris, who completed this research during a post-doctoral fellowship in the Department of Medicine's Physician-Scientist Training Program, working with senior author Douglas Vaughan, MD, Irving S. Cutter Professor of Medicine and chair of Medicine.

"Supported by clinical and functional data, our work provides exciting new evidence that modulation of cardiomyocyte signals by BMP7 represents a unique therapeutic strategy to prevent cardiac fibrosis," Flevaris added. "This discovery not only provides a novel paradigm for how the heart muscle generates signals following injury, but also has the potential to transform healthcare for the heart failure population at large."

Explore further: Study shows cardiac fibrosis reversal through gene targeting in heart failure models

More information: Panagiotis Flevaris et al. PAI-1 Controls Cardiomyocyte TGF- and Cardiac Fibrosis, Circulation (2017). DOI: 10.1161/CIRCULATIONAHA.117.028145

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Root of cardiac fibrosis defined - Medical Xpress

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In Brazil, Lula conviction opens field for 2018 presidential race – Reuters

Posted: at 6:44 am

BRASILIA (Reuters) - The graft conviction Wednesday of former Brazilian President Luiz Inacio Lula da Silva, a front-runner for next year's presidential election, opens the door for an outsider to take power in Latin America's largest country, political experts said.

Lula, a giant on the Brazilian political scene who led Brazil from 2003 to 2011, has said he wants to run for president again next year. But if his nearly 10-year sentence is upheld on appeal, Lula, a founder of the leftist Workers Party, would be barred from seeking office again for eight years, beginning after any jail time is complete.

Lula, 71, is among a raft of Brazilian elites toppled by an epic corruption scandal that has battered the nation's economy, engulfed every major party and deepened public cynicism about politics. It's a toxic mix that has enraged voters, who are searching for someone to lead them out of the political and economic wilderness.

"Brazil is now as polarized as the U.S., it really has been for years," said Carlos Melo, a political scientist with Insper, a Sao Paulo business school. "But if Lula is absent it would unquestionably open the space for an outside, very emotional leader, a bit like U.S. President Trump."

Lula was convicted on Wednesday by Judge Sergio Moro, who found Lula guilty of accepting 3.7 million reais ($1.15 million) worth of bribes from engineering firm OAS SA [OAS.UL]. That is the amount prosecutors said the company spent refurbishing a beach apartment for Lula in return for his help winning contracts with state oil company Petroleo Brasileiro.

OAS was part of a supplier cartel that prosecutors said fleeced billions of dollars from Petrobras through inflated contracts, funneling some of the ill-gotten gains to politicians and political parties. Several OAS executives were jailed by Moro, the hard-charging judge overseeing the so-called Car Wash investigation, the largest-ever corruption probe in Brazils history.

Lula' lawyers said he is innocent. He will remain free while his attorneys appeal the ruling, which they have characterized as a political witch hunt. The appeals court is expected to take at least eight months to rule.

"This politically motivated judgment attacks Brazil's rule of law, democracy and Lula's basic human rights," Lula's defense team wrote in an emailed statement. "It is of immense concern to the Brazilian people and to the international community."

Despite his legal woes, the charismatic Lula remains Brazil's best-known politician and has retained a base of loyal supporters. As president, he channeled resources from a commodities boom into social programs that helped lift millions from poverty.

Recent surveys from the respected Datafolha polling institute show that in a second-round runoff next year, Lula would beat all contenders with the exception of the environmentalist and two-time presidential candidate Marina Silva, with whom he is in a technical tie.

But if Lula cannot run, and with roughly 20 percent of the electorate undecided on any candidate, the election is up for grabs.

While Silva has polled well, Melo and other political watchers doubt that the soft-spoken, environmental expert could win, in part because her campaigns have lacked the fiery speeches and dramatic flair needed to engage many voters.

The public's thirst for showmanship and anti-establishment candidates, Melo said, could give a boost to two outsiders: Ciro Gomes, a tough-talking former governor, federal minister and congressmen who is now with the Democratic Workers Party; and Joao Doria, a millionaire media mogul and former star of Brazil's version of "The Apprentice."

Gomes, despite his long career in politics, is a rough-and-tumble politician who could easily position himself as an anti-government candidate. Loud and politically incorrect, Gomes called unpopular President Michel Temer, himself facing a corruption charge, the "captain of the coup" that led to the impeachment of former President Dilma Rousseff last year.

Doria, who had never held elected office before, stunned the political establishment last year when he won the mayorship of South America's largest city in the first round, capturing 53 percent of the vote. A member of the centrist Brazilian Social Democracy Party, he is loved by the business community for his pro-market stance. And he has caught the public's attention with stunts such as donning a street sweeper's uniform and spending days cleaning roadways.

Shortly after the Lula verdict was made public Wednesday, Doria posted on Twitter that "Justice has been done."

"The most shameless man in Brazil was condemned to nine and a half years in prison," Doria continued. "Long live Brazil."

The latest Datafolha polls shows Gomes and Doria in a technical tie in a second-round presidential vote next year.

A right-wing, law-and-order candidate, congressman Jair Bolsonaro, of the Social Christian Party, also has polled well, taking 15 percent of a simulated first-round vote in the Datafolha survey, putting him behind only Lula.

But political watchers caution his appeal is likely to wane as opponents dig into his trove of anti-gay, pro-dictatorship utterances. Bolsonaro is facing a trial before Brazil's Supreme Court for inciting violence after he told a female congresswoman on the floor of the lower house that he "would not rape her because she would not be worthy of it."

Sergio Praca, a political scientist at the Getulio Vargas Foundation, a leading Brazilian University, said he sees the Lula conviction as giving all politicians a deep scare rather than any one candidate a bounce.

"This conviction is a black mark on Brazil's history. But it is a great moment in the fight against impunity," Praca said.

"The Brazilian voter will no longer accept a presidential candidate who is not clean, and that is a real evolution in our democracy," he added. "In this trying moment, that is the positive outlook we have to hold onto."

Editing by Marla Dickerson

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