Daily Archives: July 20, 2017

‘AstroKate,’ the First to Perform DNA Sequencing in Space, Speaks at ISS Conference – R & D Magazine

Posted: July 20, 2017 at 2:46 am

NASA astronaut Kate Rubins recapped her 150 days in space during the second day of the International Space Station (ISS) R&D 2017 Conference.

Rubins, the first person to sequence DNA on the ISS by culturing beating heart cells, took part in the session on July 18 at the annual conference held in Washington D.C.

DNA sequencing identifies an organisms blueprintthe process used to determine the precise order of the four chemical building blocks in a single DNA strand. Scientists use it to advance research, including identifying the genes responsible for certain genetic diseases through the blueprints.

Rubins used a hand-held, USB-powered DNA sequencerthe MinIONto determine the DNA sequencing for a mouse, bacteria and a virus. The goal of the experiment was to show that DNA sequencing is possible in space, which could lead to the potential to enable the identification of microorganisms, monitor changes in microbes and humans in response to spaceflight, as well as aid in the detection of DNA-based life elsewhere in the universe.

Rubins investigated where human skin cells were induced to become stem cells, enabling them to differentiate into any type of cell. The research team forced stem cells to grow into human heart cells and cultured aboard the space station for one month.

During her time in space, Rubins gained a cult following and has been dubbed #AstroKate by internet commenters. Rubins earned a doctorate in cancer biology from Stanford University and was selected in 2009 for the 20th NASA astronaut class after she helped develop the first smallpox infection model for the U.S. Army Medical Research Institute of Infectious Diseases and the U.S. Centers for Disease Control and Prevention.

Joining Rubins for the Revolutionizing Science from Ground to Orbit session was Dr. Arun Sharma, from Harvard Medical School and Sarah Wallace, Ph.D., from NASA to discuss in a discussion on their ground-based experience with respect to space-based research design decisions, preparations and expectations.

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'AstroKate,' the First to Perform DNA Sequencing in Space, Speaks at ISS Conference - R & D Magazine

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Nasty, Brutish and Short: Are Humans DNA-Wired to Kill? – Scientific American

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After carefully dissecting out the muscles of a disembodied arm, biologist David Carrier and his team tied fishing lines from each isolated tendon to a guitar tuner knob, allowing the researchers to move the fingers around like ghastly marionettes. Using this setup, they could measure the varying strain on the bones when the hand was arranged in different positions and slammed into a padded dumbbell weight. Each limb took a week to prepare, but Carrier, who is head of the Evolutionary Biomechanics Lab at the University of Utah, wanted to get the study right. He had a point to provethat humankind has evolved for violence.

The 2015 paper that resulted from Carriers research showed that a buttressed fist, one with the thumb closed against the index and middle fingers, provides asafer way to hit someonewith force. Given that none of our primate cousins have the ability to make such a fist, Carrier and his co-authors propose that our hand proportions may have evolved specifically to turn our hands into more effective weapons. The research is just the latest in a string of studies Carrier has conducted to define a suite of distinguishing characteristics that are consistent with the idea that were specialized, at some level, for aggressive behavior. Through experiments with live fighters as well as with cadaver arms, he and his colleagues have reimagined our faces,hands, andupright postureas attributes that evolved to help us fight one another.

Carriers conclusions have proven contentious: Critics argue that just because a buttressed fist protects the hand during a punch doesnt mean the hand evolved that way for this specific reason any more than the human nose evolved to hold up glasses. But peoples discomfort with Carriers hypothesis goes beyond this critique. The work is sensitive because it tackles a controversial question: Are humans biologically designed for violence, or are violence and war cultural phenomena?

While many biological anthropologists have, like Carrier, arrived at the former conclusion, albeit for different reasons, cultural anthropologists tend to argue for the latter. A major take-away from the anthropological literature is that humans have thepotential, which is different from thetendency, to be violent, says Alisse Waterston, president of the American Anthropological Association (AAA), and a cultural anthropologist at the City University of New York who studies violence. But ever since the 17th-century thinker Thomas Hobbes famously described the lives of humans in their natural condition prior to the development of civil society as nasty, brutish, and short, there have been scholars such as Carrier who suggest that violence has molded our speciesthat its been etched into our bodies and minds.

Theories can encompass both biological and cultural viewpoints, of course, but in this debate, the conflict between the different perspectives has at times verged on the intensity of one of Carriers fistfights. The debate is nuanced, and it cuts right to the heart of humanitys perception of itselfas well as our collective desire for world peace.

The idea of a biological imperative for violence achieved prominence in the 1970s with the emergence of a new discipline: sociobiology. While the concept of violence being intrinsic to human nature had been around since Hobbes time, sociobiologists (and later evolutionary psychologists) specifically argued that behaviors, not just physical characteristics, can be shaped by natural selection. This meant that common behaviors like violence could be genetically determined.

The debate cuts right to the heart of humanitys perception of itselfas well as our collective desire for world peace.

At the heart of the popularization of this idea stands Napoleon Chagnon, sometimes called Americas most controversial anthropologist. Chagnon caused an uproar in 1968 when he published observations of the Yanomami people of Venezuela and Brazil, describing them as a fierce people who were in a state of chronic warfare. He asserted that Yanomami men who kill have more wives and therefore father more children: evidence of selection for violence in action. This represented a wild divergence from the anthropological consensus. Anthropologists criticized virtually every aspect of Chagnons work, from his methods to his conclusions. But for sociobiologists, this was a prime example that supported their theories.

Around the same time, David Adams, a neurophysiologist and psychologist at Wesleyan University, was inspired to investigate thebrain mechanisms underlying aggression. He spent decades studying how different parts of the brain reacted when engaged in aggression. By using electrical stimulation of specific brain regions and through creating various lesions in mammalian brains, he sought to understand the origins of different antagonistic behaviors. But Adams found the public response to his work over the top: The mass media would take [our work] and interpret it like wed found the basis for war, he says. Tired of the way his results were being interpreted by both the media and the public, Adams eventually switched gears entirely.

In 1986, Adams gathered a group of 20 scientists, including biologists, psychologists, and neuroscientists, to issue what became known as theSeville Statement on Violence. It declared, among other things, that it is scientifically incorrect to say that war or any other violent behavior is genetically programmed into our human nature. The statement, later adopted by UNESCO, an agency of the United Nations that promotes international collaboration and peace, was an effort to shake off the biological pessimism that had taken hold and make it clear that peace is a realistic goal. The press, however, was not so enthralled by Adams new tack. This is not interesting for us, one major news network responded when he asked if they would cover the Seville statement, he recalls. But when you do find the gene for war, call us back.

The Seville statement by no means ended the academic debate. Since its release, various prominent researchers have continued to advance biological arguments for our innate tendency towards violence, in contradiction of both the statement and the views of many cultural anthropologists. In 1996, Richard Wrangham, a biological anthropologist and primatologist at Harvard University, published his popular bookDemonic Males, co-authored with science writer Dale Peterson, that argued we are the dazed survivors of a continuous 5-million-year habit of lethal aggression. Central to this proposition is the idea that men, or demonic males, have been selected for violence because it confers advantages on them. Wrangham argued that murderous attacks by groups of male chimpanzees on smaller groups increased their dominance over neighboring communities, improving their access to food and female mates. Perhaps, like chimpanzees, ancestral men fought to establish dominance by killing rivals from other groups, thus securing greater reproductive success. InWranghams view, such behavior selected for males who are endowed with a certain desire for violence when the conditions are right: the experience of a victory thrill, an enjoyment of the chase, a tendency for easy dehumanization (or dechimpization).

I think the growing evidence about innate propensities for violence have shown [the Seville statement] rather clearly to be simplistic and exaggerated at best, says Wrangham.

Akey proponent of this biological view is psychologist Steven Pinker, another Harvard researcher whose writing, particularly his 2011 bookThe Better Angels of Our Nature, has significantly shaped the conversation about human violence in recent years. In his 2002 bookThe Blank Slate, Pinker wrote, When we look at human bodies and brains, we find more direct signs of design for aggression, explaining that men in particular bear the marks of an evolutionary history of violent male-male competition. Onewidely quoted estimateby Pinker places the death rate resulting from lethal violence in nonstate societies, based on archaeological evidence, at a shocking 15 percent of the population.

Physical indicators, such as those studied by Carrier, can be viewed as evidence that selection for violence-enabling features has taken place. Carrier sees signs of design for aggression everywhere on the human body: In a recent paper, co-authored with biologistChristopher CunninghamfromSwansea University,he suggests thatour foot postureis an adaptation for fighting performance. He has even proposed, as part of his fist-fighting hypothesis, that the morerobust facial featuresof men (as opposed to women) evolved to withstand a punch.

I really dont think its debatable that aggression has shaped human evolution, agrees Aaron Sell, an evolutionary psychologist at Griffith University in Australia, who has explored the combat design of human males. Sell hascompiled a listof 26 gender differences, ranging from greater upper body strength to larger sweat capacity, thatsuggest adaptation for fightingin human males. It is a very incomplete list though, he adds.

Many anthropologists remain unconvinced by those who suggest that there is an evolutionary advantage in violence and a deep biological explanation for conflict. Theyre just barking up the wrong tree, says Douglas Fry, an anthropologist who specializes in the study of war and peace at the University of Alabama, Birmingham.We are well designed to prevent ourselves getting into lethal conflicts and to avoid the actual physical confrontation, he argues, describing the idea that we are innately predisposed to violence as a cultural belief that is just plain wrong.

David Carrier is an excellent biomechanist who conducts careful and clever experiments, says Caley Orr, a paleoanthropologist at the University of Colorado School of Medicine. Hes probably right when he talks about the biomechanicalconsequencesof some of the anatomy, but that is different from resolving what the evolutionary selective pressures were that shaped it in the first place.

Polly Wiessner, an Arizona State University anthropologist whostudies warfare and peacemakingin the Enga of highland Papua New Guinea as well as social networks for risk reduction in the !Kung of the Kalahari Desert, points out another potential problem with Carriers logic: I dont know of anyone [in traditional societies] who fistfights; people wrestle, she explains, adding that if they really want to do someone in, people in such societies simply use weapons. If punching is uncommon in these societies, its reasonable to assume this type of combat wasnt a key factor in our evolution.

More broadly, if violence and warfare are not ubiquitous throughout traditional societies, this would suggest that these human behaviors are not innate, but rather arise from culture. Fry hasextensively examinedboth archaeological and contemporary evidence, and has documented over70 societies that dont make warat all, from the Martu of Australia, who have no words for feud or warfare, to the Semai of Malaysia, who simply flee into the forest when faced with conflict. He also argues that there is very little archaeological evidence for group conflicts in our distant past, suggesting war only became common as larger, sedentary civilizations emerged around 12,000 years agothe opposite of Pinkers conclusions.

Chimpanzees might just be ultra-violent outliers.

As for our primate cousins, according to primatologist Frans de Waal of Emory University, theirbehavior has been cherry-pickedto suit a more violent narrative for humanity. While chimp behavior may well shed light on human male tendencies for violence, de Waal points out that the other two of our three closest relatives, bonobos and gorillas, are less violent than us. In even the most peaceful human societies, of course, violence in one form or another is not totally unknown, and the same is true of these peaceful apes. Nevertheless, it is plausible that instead of descending from chimp-like ancestors, we come from a lineage of relatively peaceful, female-dominated apes, like bonobos. Chimpanzees might just be ultra-violent outliers.

That our evolutionary success is based largely on our ability to be violentthats just wrong, says biological anthropologist Agustn Fuentes,who is chair of anthropology at the University of Notre Dame in Indiana. The sum total of data we have from the genetics to the behavioral to the fossil to the archaeological suggests that is not the case.

Scholars and researchers on both sides of the debate want their work applied to achieve more peaceful societies, and most agree that humans are capable of both great acts of violence and great acts of kindness. Yet from Chagnon onward, there has been a palpable degree of tension between those who hold opposing viewpoints. In anopen letter to de Waalin 2005, University of Groningen anthropologist Johan van der Dennen complained of feeling shouted down by the peace and harmony mafia.

At issue is the fact that for some a biological explanation suggests that violence is unavoidable. If we accept that violence is inherent, says Fuentes, we start to accept unpleasant behavior as inevitable and indeed natural in ourselves and those around us. The old adage that violence begets violence is true, says AAA President Waterston. A society that adopts and is adapted to violence tends to reproduce it, locating and leveraging the resources to do so.

John Horgan, science journalist and author ofThe End of War, has been conductinginformal surveys with studentsfor years, and he reports that over 90 percent of respondents think we will never stop fighting wars. And when Adamsandothers conducted their own studies on student attitudes, they observed a worrying effect: There was anegative correlationbetween the belief that violence was innate and peace activism. Even among those students whowereactively campaigning for peace, 29 percent reported that they had previously been put off by a pessimistic view that humans are intrinsically violent. Adams predicts that the level of apathy would be higher among those who abstained from activism altogether: If you think that war is inevitable, why oppose it? he says.

Such fatalistic attitudes are particularly worrying when held by those in power: They can be used to justify military budgets, and not seek alternative solutions, argues de Waal. Even Nobel Peace Prizewinning former U.S. President Barack Obama seems to believe that violence is bred into humanity: War, in one form or another, appeared with the first man, he said in his Nobel Prize acceptance speech. With Obamas entire tenure spent leading a nation at waralbeit war that he inherited from his predecessorHorganhas wonderedif the former presidents personal belief in the deep-roots theory of war might have prevented him from more actively seeking peace.

But Obama, like Hobbes and Pinker, has also argued that society is equipped to fight the supposed biological imperative for violence: We have increasingly created codes of law and philosophies to limit violent acts, thanks to our capacity for empathy and reason. InTheBetter Angels of Our Nature, Pinker elegantly charts what he sees as a decline in violence, from the frightening 15 percent of violent deaths in nonstate societies down to 3 percent of deaths attributed to war, genocide, and other human-made disasters in the 20th centurya period that includes two world wars.

Waterston, exasperated by the tired assumption that violence is rooted in human nature, explains that for her the question should simply be about what circumstances are required for there to be less violence. Yet those seeking biological explanations see themselves as getting to the core of the issue in order to answer this question. Carrier offers an analogy to alcoholism: If you have a predisposition to drinking excessively, you must recognize those tendencies, and the reasons behind them, in order to fight them. We want to prevent violence in the future, says Carrier, but were not going to get there if we keep making the same mistakes over and over again because we are in denial about who we are. Chimpanzee research, for example, demonstrates how balanced power between groups tends to limit violence. The same is clearly true of humans, Wrangham notes. Probing that simple formula, with all its complexities, seems to me a very worthwhile endeavor.

There may be disagreement about how to get there, but all involved are trying to attain the same end goal. An evolutionary analysis does not purport to condemn humans to violence, explains Wrangham. What it does achieve is a more precise understanding of the conditions that favor the highly unusual circumstance of peace.

This article is reproduced with permission fromwww.sapiens.org.The article wasfirst publishedon July 12, 2017.

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Only 10-25% of Human Genome is Functional, New Estimate Says – Sci-News.com

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In a paper published in the journal Genome Biology and Evolution, University of Houston Professor Dan Graur says that the functional portion of the human genome probably falls between 10% and 15%, with an upper limit of 25%. These figures are very different from one (about 80%) given in 2012 by the Encyclopedia of DNA Elements (ENCODE) project, but more optimistic than the 2014 estimate (8.2%) by Rands et al.

According to Professor Graur, the functional fraction within the human genome cannot exceed 25%, and is probably considerably lower.

Professor Graur took a deceptively simple approach to determining how much of the genome is functional, using the deleterious mutation rate that is, the rate at which harmful mutations occur and the replacement fertility rate.

Both genome size and the rate of deleterious mutations in functional parts of the genome have previously been determined, and historical data documents human population levels.

With that information, the researcher developed a model to calculate the decrease in reproductive success induced by harmful mutations, known as the mutational load, in relation to the portion of the genome that is functional.

The functional portion of the genome is described as that which has a selected-effect function, that is, a function that arose through and is maintained by natural selection.

Protein-coding genes, RNA-specifying genes and DNA receptors are examples of selected-effect functions.

In Professor Graurs model, only functional portions of the genome can be damaged by deleterious mutations; mutations in nonfunctional portions are neutral since functionless parts can be neither damaged nor improved.

Because of deleterious mutations, each couple in each generation must produce slightly more children than two to maintain a constant population size.

Over the past 200,000 years, replacement-level fertility rates have ranged from 2.1 to 3 children per couple; global population remained remarkably stable until the beginning of the 19th century, when decreased mortality in newborns resulted in fertility rates exceeding replacement levels, Professor Graur said.

If 80% of the genome were functional, unrealistically high birth rates would be required to sustain the population even if the deleterious mutation rate were at the low end of estimates.

For 80% of the human genome to be functional, each couple in the world would have to beget on average 15 children and all but two would have to die or fail to reproduce.

If we use the upper bound for the deleterious mutation rate (2108 mutations per nucleotide per generation), then the number of children that each couple would have to have to maintain a constant population size would exceed the number of stars in the visible Universe by ten orders of magnitude.

_____

Dan Graur. An upper limit on the functional fraction of the human genome. Genome Biol Evol, published online July 11, 2017; doi: 10.1093/gbe/evx121

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Bio-Rad Laboratories Aims to Create Genome Editing Tools Pipeline, Starting With ddPCR – GenomeWeb

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NEW YORK (GenomeWeb) Genome editing continues to be one of the most compelling trends in biological research as investigators maintain a steady pace of studies and papers on new CRISPR-Cas systems, innovative research tools, and various uses for the technology.

But academia is certainly not alone in its enthusiasm for CRISPR industry is joining in as various companies are either setting out to develop new tools based on the genome editing technology or find CRISPR-based applications for tools that already exist.

A trial upgrade to GenomeWeb Premium gives you full site access, interest-based email alerts, access to archives, and more. Never miss another important industry story.

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The role of AI in the future of health care | VentureBeat | AI | by Peter … – VentureBeat

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American physician and surgeon William J. Mayo, one of the founders of the famed Mayo Clinic, stated, The aim of medicine is to prevent disease and prolong life, the ideal of medicine is to eliminate the need of a physician. Emerging applications of artificial intelligence (AI), as well as medical research trends, suggests that we are moving toward fulfilling medicines aim and achieving its ideal.

Health care organizations appear to be preparing themselves for the next technological step. For instance, in 2014 health care providersspent4.2 percent of their revenues on IT, compared to a 3.3 percent cross-industry average. Penetration of electronic health care recordsgrewfrom 40 percent in 2012 to 67 percent in 2017. With its wealth of smart machines, health care is expected to be among the fastest growing industries in terms of data generated. Ciscoestimatesa 2015-2020 CAGR (compound annual growth rate) of machine-to-machine connections in health care to be 30 percent, more than the expected 29 percent growth rate for connected cars.

The next big thing in health care is also anticipated by investors, who have increased their bets on the segment. Venture capital investment in cutting-edge, AI-driven medical technologies like computer vision, machine learning (ML), and robotics hasskyrocketedfrom $30 million in 2012 to $892 million in 2016.

Studying the academic and funding dimensions of the medical AI ecosystem, we see that the movement towards Mayos vision is taking place. Prediction and prevention, wellness and rehabilitation, amelioration of aging, and technological augmentation of doctors are all noticeable themes.

Prediction and prevention are well-known concepts for health care professionals. Now they appear to be revitalized and reinforced by machine learning. A dive into PubMed databases demonstrates that the pace of research activity for ML-powered prediction and prevention is currently higher than the research activity associated with these concepts without involving ML.

AI health care startups working with predictive and preventive medicine are a new phenomenon that seems to embrace growing research. Out of 218 health care AI startups selected from an industry database, 54 were involved in predictive medicine, with 44 founded in 2010 or later.

Some companies, likeJvionandHBI Solutions, provide health care organizations with patient-level predictions and risk scores. Others, likeOcuvera, bring prevention to hospitals operations by, for example, by identifying a patients proclivity to fall and helping to avoid the accident.

Activity in the wellness segment of the health care value chain also reflects growing interest in the preventive aspect of medicine. Wellness appears to be the fastest-growing segment among the core segments of the health care value chain.

Researchers attention to the wellness segment is matched by entrepreneurs interest. Out of 218 AI health care startups, 21 develop wellness applications.

Startup funding data suggests that younger startups tend to work with wellness applications. About 95 percent of AI-powered wellness startups were founded in 2010 or later, compared with 57 percent of those tackling surgery-related issues.

Wellness applications may use almost unlimited data from healthy populations, the collection of which is accelerated by new devices entering the market. The more data from healthy patients is available, the more insight one can get. Traditional health care uses data that is limited by the number of cases and more severe sampling requirements.

Prevention and prediction segments start from research into cells and genetics, aiming to eliminate the underlying causes of dangerous diseases. Machine learning drives these research topics as well.

Founding data for AI startups helps to identify the uptick in launching startups working with cell and genetic research. For example, notable companies such asHuman Longevity,BenevolentAI,Recursion Pharmaceuticals, and at least seven others were launched between 2010 and 2017.

Following Mayos vision, health care researchers and founders try to make life longer by battling aging and making rehabilitation smoother. Medical research on aging is growing rapidly, compared with research on the leading causes of death in the U.S. It is also one of the fastest accelerating research area in the past six years.

Not being a disease in the traditional sense, aging is an excellent target for tech disruption, with no critical state (i.e., the fast deterioration of a patient) and developing across the whole lifespan. Aging research may benefit from lots of data collected during a patients life.

Already amassed data and evolving data collection technologies, combined with machine learning, contribute to fighting aging. For instance, this technology can check if senescence acceleration is taking place and estimate biological age more precisely. Then relevant treatment options can be selected.BioageLabsandInsilico Medicineuse machine learning to discover anti-aging drugs.

Rehabilitation is experiencing a growing research interest as well. It also benefits from AI as it requires long-term commitment, repetitive actions, and a continuous feedback loop. Twelve startups are moving the field of rehabilitation forward by, for instance, working with brain dysfunction rehabilitation likeIntenduor helping joint replacement patients likePeerwell.

The examples given above suggest that tech is moving medicine toward preventing diseases from happening. This can be done by tweaking genes, detecting early signs of diseases, and altering human behavior for health benefits. Currently AI tech penetrates just a part of the list of dangerous diseases.

Perhaps at some point, all diseases will be preventable and there will be no need for a physician. But can tech eliminate physicians before it eliminates diseases by replacing human doctors with robots and algorithms? Our observation suggests that this goal is not a heavy area of interest. Instead, AI-powered health tech looks to assist physicians and make them more accessible for patients.

Studying 35 companies that employ computer vision in health care, one may conclude, that their primary approach is to augment professionals, rather than to replace them. For example,BayLabsdevelops technology to simplify the process of recording, editing and sharing of video, whileMindshare Medicalaims to empower clinicians and health care providers by utilizing medical imaging.Oxford Heartbeathelps clinicians accurately plan and rehearse stent placements inside blood vessels.

Telemedicine is also empowering health care professionals rather than replacing them. In a world where 400 million people do not haveaccessto basic health care services, telemedicine is a viable option to keep doctors busy, even after efficiency grows manifold and demand in well-off regions starts decreasing. Out of 218 companies, 39 are in one way or another providing telemedicine technologies. Some help patients to navigate medical knowledge and make a preliminary diagnosis (Babylon,YourMD), while others give doctors unprecedented monitoring tools (Sentrian,AiCure) and provide valuable health-related information and advice (ZoiHealth,Flo). Medical research in telemedicine is also growing rapidly, rocketing from 317 articles in 2010 to 845 in 2016.

Our inquiry suggests that the vision of medicine coined by Mayo is closer to life then we think, thanks to AI. Cognitive technologies fit nicely with the popular research themes explored above. Moreover, at the current stage, where diseases are not eliminated entirely, tech empowers rather than displaces health professionals. Therefore, we expect to see more exciting AI health tech to emerge and suggest entrepreneurs consider opportunities in this space.

Notes on data collection: Trends on research activity are derived from searching titles and abstracts at PubMed. Data on AI health tech companies is from a keyword search and manual selection at Pitchbook.Flint Capital is an investor in Flo, an AI-powered period and ovulation tracker referred to in this article.

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Search for Eczema Relief Leads to Business Opportunities – New York Times

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Eczema entrepreneurs are often driven by personal experiences that they or their family members have had with the skin condition. Joe Paulo, for example, created Smiling Panda clothing after he had eczema as a teenager. But he and others, including Ms. Scott, have found that the path to a winning eczema product is not short or easy, in large part because there is no official testing process to get approval.

Everyones eczema is different, and not everything works the same way on every patient, said Julie Block, president and chief executive of the National Eczema Association, which tracks developments in the field but does not endorse products. The association does offer a certificate of acceptance for companies that can show they have clinical safety testing data for their products.

The only apparel company to earn the associations grade so far is Ms. Scotts AD RescueWear, whose wet-wrap therapy garments relieve itching by sealing in moisture. Medical studies have shown such therapy helps eczema sufferers.

Ms. Scott discovered the therapy while searching for a way to help Harrison, who will be 9 in September. As a baby, his eczema was so severe that he got a staph infection from scratching. Dr. Mark A. Ebadi, an allergist at the Colorado Allergy and Asthma Center in Denver who was treating Harrison, recommended wet-wrap therapy.

Ms. Scott dressed her son in wet cotton pajamas, and at Dr. Ebadis suggestion taped her husbands tube socks around her sons hands for protection. But the wrapping was cumbersome.

It was off-putting to wrap a child in damp clothing, she said. And cotton pajamas got baggy, and my son would get cold. We needed something for him that was close fitting so it would be next to his skin.

It took a lot of trial and error, but Ms. Scott, who is an interior designer, gradually developed a full body suit with flat seams almost like a long-sleeve onesie with covers for her sons nails. The suit has attached feet, like those found on infant and toddler pajamas, to prevent children from scratching their legs and ankles, where clusters of eczema are often found.

I knew nothing about clothing manufacturing, Ms. Scott said. Eventually, she found a family-owned company in Michigan that was willing to produce a run of her sample suit. It was made from the artificial fiber Tencel, which retains more water so the material holds its shape and stays closer to the skin.

She called the body suit the Wrap-E-Soothe suit, but customers later began calling it the rescue suit a nickname her company quickly adopted. It sells for $109 for children. The product line later was expanded to include tops and pants, which cost $74.50, and sleeves, which cost $34.95, to cover childrens arms and legs.

Ms. Scott began selling the garments in 2012, the same year that she teamed up with Anne McVey, an experienced marketer in Davenport, Iowa, whose daughter has eczema. To test reaction from doctors, they took samples to an annual meeting of allergy, asthma and immunology specialists, held in San Antonio in 2013. The garments received good reviews, but Ms. Scott said it was an uphill climb to attract customers online because the product was little known.

She did not share specific numbers, but Ms. Scott said sales increased 70 percent last year to around 10,000 items over 2015. Repeat customers, the eczema associations certificate of acceptance and a medical product billing insurance code have all helped raise the sites visibility and attract business, Ms. Scott said.

Were aiming for 100,000 pieces annually, she added, noting that the site is adding garments for adults.

Mr. Paulo, 23, has already made some inroads with adults seeking relief with his Smiling Panda brand, which he started after getting eczema on his arms. The eczema appeared after he moved from California to Philadelphia in 2012 to attend college.

His eczema, he said, got significantly worse when he had to wear professional clothing during college internships. When even bedsheets began irritating his skin, he started researching the properties of different fibers and how clothing was made. He chose a bamboo-cotton blend for his clothing because bamboo is soft and cotton fibers allow a closer fit, he said. He began cutting and stitching his own shirts, with flat seams and no tags.

When he wore his shirts to bed, he said: I went from having a really tough time falling asleep to having no trouble at all.

I thought there might be other working adults interested in this type of clothing, and that comfortable clothing would help them in the same way it helped me, he said. He found a small manufacturer willing to make a batch of sizes for women and men. He chose Smiling Panda as the company name and started a website in February 2016.

Mr. Paulo, an engineer for a construction company, sold only about 70 shirts last year at $40 to $50 apiece.

But we are on track to sell 100 shirts this year, he said, despite limited advertising, mostly on Facebook. He added that sales were expected to pick up in coming months.

Many of the men and women who buy his garments for workout wear, undergarments and sleepwear are repeat buyers and are so committed that, in March, he decided to add childrens sizes.

Mr. Paulo said he did not know if the company would ever be profitable. I like doing it because I feel like our products make a difference in our customers lives, he said. I know from personal experience how miserable clothing can be when you are itching from eczema.

A version of this article appears in print on July 20, 2017, on Page B5 of the New York edition with the headline: Personal Stories Drive Start-Ups In Eczema Products.

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Skin doctor’s top tips to help eczema sufferer’s survive summer and five must-have remedies for under a tenner – The Sun

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The Sun
Skin doctor's top tips to help eczema sufferer's survive summer and five must-have remedies for under a tenner
The Sun
The sun alone can cause it to dry our but excess sweat can also leave your skin craving moisture. Dr Bewley said the summer heat has been found to cause eczema flare ups with many sufferers. The drier your skin becomes the more your eczema is likely to ...

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How will we keep controversial gene drive technology in check? – Science Magazine

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Gene drive technology might limit the ability of Anopheles gambiae mosquito to transmit malaria to humans.

CDC/James Gathany

By Kelly ServickJul. 19, 2017 , 4:00 PM

We dont yet know whether the gene-spreading approach known as gene drive, intended to wipe out invasive pests or reduce the spread of insect-borne disease, will work in the wild. But groups of genetic experts are already talking about how to make it stop working if needed.

And at a symposium today in Washington, D.C., organized by the International Life Sciences Instituteand the National Academies of Sciences, Engineering, and Medicine, researchers and policy experts discussed how to measure and limit a gene drive strategys environmental risks. And the U.S. militarys research arm announced it will fund efforts by several high-profile genetics labs to develop ways to reverse or limit the spread of an introduced gene if it should have unintended consequences on animals or an ecosystem.

Were in the business of preventing technological surprise, but also being prepared for the surprises that come from the use of these technologies, said Renee Wegrzyn, a program manager at the Defense Advanced Research Projects Agency (DARPA) in Arlington, Virginia, which today announced seven research teams that will share a $65 million pot of funding under the agencys Safe Genes program over the next 4 years.

Gene drive works by tinkering with the rules of inheritance, increasing the likelihood a gene will be passed to the next generation. The phenomenon occurs in nature by a variety of mechanisms, but all increase a genes ability to permeate a population quickly and thoroughly, even if it doesnt carry any survival advantage. Inspired by natural gene drives, researchers have spent decades trying to perfect a system that might endow a population of mosquitoes with a malaria resistance gene, for example, or spread a lethal gene that cuts down a local population of invasive insects or rodents.

Progress surged with the discovery of CRISPR/Cas9 gene editing. By inserting the gene for a new trait alongside genes for a DNA-cutting enzyme and an RNA guide, scientists can prompt a cell to slice out copies of the original, wild-type gene from its chromosomes and use the inserted gene as a template for repair. Its sperm and egg cells will thus bear two copies of the new gene, which radically increases the odds that its offspring will inherit it.

But the notion of wiping out an entire species or unleashing a gene that could spread like wildfire through a population has also bred controversy. Evidence that CRISPR gene drives could be extremely efficient in lab-reared insects led prominent researchers to urge caution.

Todays meeting included some practical discussion of how gene drive might be contained. Molecular biologist Bruce Hay of the California Institute of Technology in Pasadena presented his labs research into high-threshold gene drives, designed to spread effectively only if individuals with the new gene make up a large fraction of the total population. Wayward migrants thus wouldnt manage to spread the gene widely outside the intended area. And if an introduced gene had unexpected consequences, researchers might reverse a gene drive by introducing more wild, unmodified individuals to outnumber the new ones. I think we really can do safe, local, and reversible gene drive, Hay told the audience. This is not just a fantasy.

But CRISPR brings a whole new set of unknowns. It might have unpredictable, off-target effects on the genome, and scientists dont know how to shut it down. Among the seven teams selected for the Safe Genes program are some CRISPR pioneers. Harvard University geneticist George Church will lead efforts to develop more precise gene-editing systems that distinguish between similar sequences. Molecular biologist Jennifer Doudna of the University of California (UC), Berkeley, will, according to DARPAs news release, look for anti-CRISPR proteins that could prevent unwanted editing.

Several more projects explicitly focus on gene drive applications: A group at UC Riverside led by molecular biologist Omar Akbari will try to document the genetic diversity of the Aedes aegypti mosquito and test ways to limit or reverse gene drives in contained test environments. Biologist John Godwins team at North Carolina State University in Raleighwill test ways to cut down rodent populations by targeting gene variants present only in invasive communities.

Experts still predict that testing of gene drive in the field is still years away. This is such early days in the field, Wegrzyn told the audience today. Why dont we build those [control] tools in now, rather than trying to retrofit them into these systems?

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How will we keep controversial gene drive technology in check? - Science Magazine

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Restoring Cognitive Function for Alzheimer’s Disease – UB School of Medicine and Biomedical Sciences News

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Researchers in the Department of Physiology and Biophysics are studying genetic and epigenetic factors in Alzheimers disease to develop novel ways of restoring function to patients in the later stages of the neurodegenerative disorder.

While most research on Alzheimers has focused on early diagnosis and treatment, the new study is focusing on finding novel ways to restore cognitive function and will utilize studies in mouse models carrying gene mutations for familial Alzheimers (where more than one family member has the disease) and in human stem cell-derived neurons from Alzheimers patients.

The work involving preclinical research to unravel genetic and epigenetic factors that cause Alzheimers is funded by a five-year, $2 million grant from the National Institutes of Healths National Institute on Aging. Zhen Yan, PhD, professor of physiology and biophysics, is principal investigator.

Epigenetic factors can change gene expression without altering the underlying DNA sequence which in turn affects how cells read the genes. Such changes may profoundly impact human health.

We hypothesize that Alzheimers is produced by a combination of genetic risk factors and environmental factors, such as aging, that induce the dysregulation of specific epigenetic processes that lead to impaired cognition, Yan says.

The research will explore how epigenetic changes that accompany Alzheimers disease also might help identify a much sought-after biomarker for the disease, which could allow for novel treatment.

Numerous clinical trials in recent years have focused on reducing amyloid beta plaque in the brain. So far, such efforts havent yet translated into improving cognitive function, Yan says.

Our research, by contrast, will target synaptic function, which is at the root of cognitive function, she explains. Our hypothesis is that this approach will have a more fundamental effect.

Yan and her colleagues will investigate aberrant histone methylation, an epigenetic process that affects the expression of genes encoding key proteins that allow for signals to be transmitted between neurons.

When this process is dysregulated in Alzheimers disease, neuronal signaling doesnt function properly, leading to cognitive impairment.

Even though Alzheimers patients can often easily remember something that happened 20 years ago, the later stages of the disease are characterized by a growing inability to recall recently learned information.

That kind of short-term working memory, Yan explains, is dependent on excitatory transmission in the frontal cortex, mediated by glutamate receptors.

At the later stages of the disease, we know that there is a loss of glutamate receptors that are crucial for learning and memory, she says. When these receptors lose the ability to communicate, there is a loss of cognition.

Our research will try to restore gene expression in these glutamate receptors using epigenetic tools, with the ultimate goal of restoring cognitive function.

Jian Feng, PhD, professor of physiology and biophysics, is a co-investigator on the grant titled A Novel Epigenetic Mechanism for Alzheimers Disease.

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Lunatic Fringe gene plays key role in renewable brain | Baylor … – Baylor College of Medicine News (press release)

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The discovery that the brain can generate new cells about 700 new neurons each day has triggered investigations to uncover how this process is regulated. Researchers at Baylor College of Medicine and Jan and Dan Duncan Neurological Research Institute at Texas Childrens Hospital have developed a novel mouse model that for the first time selectively identifies neural stem cells, the progenitors of new adult brain cells. In these mice, researchers have found a novel mechanism by which descendants of neural stem cells can send feedback signals to alter the division and the fate of the mother cell. These findings appear in eLife.

Our initial goal for this study was to find a gene that is selectively expressed in primary neural stem cells. Based on the information obtained from publicly available expression databases, we started with roughly 750 potential candidate genes. It took an enormous amount of hard work and meticulousness to systematically narrow it down to a single gene it was like looking for a needle in a haystack, said Dr. Mirjana Maleti-Savati, assistant professor of pediatrics and neurology at Baylor and Texas Childrens Hospital, who led this study. After extensive analysis, we were convinced that the gene lunatic fringe, a member of the well-studied Notch signaling pathway, was the selective marker of neural stem cells.

Previous studies in a number of animal models have shown that members of the Notch signaling pathway participate in the regulation of stem cell fate.The finding that lunatic fringe is a selective marker for neural stem cells and a member of the Notch family was a clue of its possible role as regulator of neural stem cell fate. This represented a potentially significant step forward in the field of neurogenesis because the precise mechanism and the fine-tuning of Notch signaling in the hippocampus of the adult brain, where new neurons are born, had remained elusive until now.

Lunatic fringe helps keep the brain renewable

Maleti-Savati and her colleagues show that lunatic fringe mediates a mechanism that helps preserve neural stem cells, so that they can form new neurons throughout life while also ensuring optimal number of neurons.

Interestingly, neural stem cells and their progeny physically cluster closely around one another, which makes it an ideal environment for direct cell-cell communication between neural stem cells and adjacent cells. The scientists found that lunatic fringe allows neural stem cells to distinguish between and respond differently to surrounding cells expressing other markers, namely those expressing the Delta marker and those expressing the Jagged1 marker.

When surrounded by Delta-neurons, most neural stem cells remain in a stand-by mode, protected from random activation and unnecessary division. On the other hand, when neural stem cells interact with Jagged1-neurons, they begin to divide. Combined, these processes allow division of every neural stem cell to be finely regulated to prevent excessive division and premature exhaustion of its potential.

This study and the mouse model we have generated is a huge step forward in the field of neural stem cell biology because now we not only have a benchmark to specifically label primary neural stem cells, but have identified a key quality control step that determines their fate, said Fatih Semerci, postdoctoral student in Maleti-Savati lab and the lead author of this study. Lunatic fringe allows neural stem cells to decide whether to stay dormant or not, and, once they start to divide, whether to continue or to stop.

This study has far-reaching implications on the field of neurogenesis because age-related mental decline and psychiatric disorders such as anxiety and depression have been associated with a reduced ability to generate new neurons in the hippocampus, the center of learning and memory. The formation of new neurons is affected by many factors, both internal and external. For example, physical activity and enriched environment enhance it, while loneliness and depression dampen it. Adult hippocampal neurogenesis has garnered significant interest because targeting it could result in new therapies for many disorders.

Others who contributed to this study include William Tin-Shing Choi, Aleksander Bajic, Aarohi Thakkar, Juan Manuel Encinas, Andrew Groves of Baylor College of Medicine; Frederic Depreux of the Rosalind Franklin University of Medicine and Science in Chicago and Neil Segil of University of Southern California.

Funding for this study comes from the Nancy Chang Award and the CPRIT grant (RP130573CPRIT), and in part by the Microscopy, RNA In Situ Hybridization and Neuropathology Core facility at Baylor College of Medicine, supported by the NIH Shared Instrumentation grant (1S10OD016167) and the NIHIDDRC grant U54HD083092. Further support was provided by the Cytometry and Cell Sorting Core (NCRR grant S10RR024574, NIAID AI036211 and NCI P30CA125123).

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Lunatic Fringe gene plays key role in renewable brain | Baylor ... - Baylor College of Medicine News (press release)

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