The Prometheus League
Breaking News and Updates
- Abolition Of Work
- Ai
- Alt-right
- Alternative Medicine
- Antifa
- Artificial General Intelligence
- Artificial Intelligence
- Artificial Super Intelligence
- Ascension
- Astronomy
- Atheism
- Atheist
- Atlas Shrugged
- Automation
- Ayn Rand
- Bahamas
- Bankruptcy
- Basic Income Guarantee
- Big Tech
- Bitcoin
- Black Lives Matter
- Blackjack
- Boca Chica Texas
- Brexit
- Caribbean
- Casino
- Casino Affiliate
- Cbd Oil
- Censorship
- Cf
- Chess Engines
- Childfree
- Cloning
- Cloud Computing
- Conscious Evolution
- Corona Virus
- Cosmic Heaven
- Covid-19
- Cryonics
- Cryptocurrency
- Cyberpunk
- Darwinism
- Democrat
- Designer Babies
- DNA
- Donald Trump
- Eczema
- Elon Musk
- Entheogens
- Ethical Egoism
- Eugenic Concepts
- Eugenics
- Euthanasia
- Evolution
- Extropian
- Extropianism
- Extropy
- Fake News
- Federalism
- Federalist
- Fifth Amendment
- Fifth Amendment
- Financial Independence
- First Amendment
- Fiscal Freedom
- Food Supplements
- Fourth Amendment
- Fourth Amendment
- Free Speech
- Freedom
- Freedom of Speech
- Futurism
- Futurist
- Gambling
- Gene Medicine
- Genetic Engineering
- Genome
- Germ Warfare
- Golden Rule
- Government Oppression
- Hedonism
- High Seas
- History
- Hubble Telescope
- Human Genetic Engineering
- Human Genetics
- Human Immortality
- Human Longevity
- Illuminati
- Immortality
- Immortality Medicine
- Intentional Communities
- Jacinda Ardern
- Jitsi
- Jordan Peterson
- Las Vegas
- Liberal
- Libertarian
- Libertarianism
- Liberty
- Life Extension
- Macau
- Marie Byrd Land
- Mars
- Mars Colonization
- Mars Colony
- Memetics
- Micronations
- Mind Uploading
- Minerva Reefs
- Modern Satanism
- Moon Colonization
- Nanotech
- National Vanguard
- NATO
- Neo-eugenics
- Neurohacking
- Neurotechnology
- New Utopia
- New Zealand
- Nihilism
- Nootropics
- NSA
- Oceania
- Offshore
- Olympics
- Online Casino
- Online Gambling
- Pantheism
- Personal Empowerment
- Poker
- Political Correctness
- Politically Incorrect
- Polygamy
- Populism
- Post Human
- Post Humanism
- Posthuman
- Posthumanism
- Private Islands
- Progress
- Proud Boys
- Psoriasis
- Psychedelics
- Putin
- Quantum Computing
- Quantum Physics
- Rationalism
- Republican
- Resource Based Economy
- Robotics
- Rockall
- Ron Paul
- Roulette
- Russia
- Sealand
- Seasteading
- Second Amendment
- Second Amendment
- Seychelles
- Singularitarianism
- Singularity
- Socio-economic Collapse
- Space Exploration
- Space Station
- Space Travel
- Spacex
- Sports Betting
- Sportsbook
- Superintelligence
- Survivalism
- Talmud
- Technology
- Teilhard De Charden
- Terraforming Mars
- The Singularity
- Tms
- Tor Browser
- Trance
- Transhuman
- Transhuman News
- Transhumanism
- Transhumanist
- Transtopian
- Transtopianism
- Ukraine
- Uncategorized
- Vaping
- Victimless Crimes
- Virtual Reality
- Wage Slavery
- War On Drugs
- Waveland
- Ww3
- Yahoo
- Zeitgeist Movement
-
Prometheism
-
Forbidden Fruit
-
The Evolutionary Perspective
Monthly Archives: June 2017
Farewell, ROSA! Space Station Lets Go of Roll-Out Solar Array After Retraction Fail (Video) – Space.com
Posted: June 28, 2017 at 5:52 am
After a week of tests on the end of the International Space Station's robotic arm, the Roll-Out Solar Array (ROSA) was safely jettisoned. While the rollable solar panel unfurled successfully at the beginning of the experiment, the ground operations team was unable to retract it to stow.
ROSA is a flexible, lightweight unit that could someday help power solar-electric propulsion spacecraftfor journeys far beyond Earth. It was released yesterday (June 26) according to a procedure developed before the instrument flew, in case of this contingency, NASA officials said in a blog post. NASA also released avideo of the release.
"Once jettisoned, ROSA will not present any risk to the International Space Station and will not impact any upcoming visiting vehicle traffic," they added.
If it had been retracted successfully, ROSA would have been stowed in the trunk of SpaceX's Dragon spacecraft, which departs the space station in a week. But it still wouldn't have made it back to Earth: Dragon's trunk will detach and burn up in Earth's atmosphere as the cargo spacecraft returns.
During the week-long experiment, crews on the ground monitored how well ROSA deployed, observing via video from the space station, as well as measuring its performance over the course of the week as the assembly moved through sunlight and shadow. Its re-rolling marked the end of the instrument's in-space test, according to NASA.
The space station crew is busy packing Dragon for its departure Sunday (July 2); the departing spacecraft will bring cargo and experiments back from the station to splash down in the Pacific Ocean about 5.5 hours after its 11:38 a.m. EDT (1538 GMT) release from the station.
Email Sarah Lewin at slewin@space.com or follow her@SarahExplains.Follow us@Spacedotcom,FacebookandGoogle+. Original article onSpace.com.
Visit link:
Farewell, ROSA! Space Station Lets Go of Roll-Out Solar Array After Retraction Fail (Video) - Space.com
Posted in Space Station
Comments Off on Farewell, ROSA! Space Station Lets Go of Roll-Out Solar Array After Retraction Fail (Video) – Space.com
The SpaceStation sponsors Media Agency Rising Star Award – Bizcommunity.com
Posted: at 5:52 am
At this year's Most Awards ceremony, The SpaceStation will sponsor the Media Agency Rising Star Award. The Media Agency Rising Star Award goes to the person who has consistently displayed excellent relationship skills, open minded, innovative, confident, challenges the status quo, outspoken, decisive, takes the lead, involved in the industry and developing a profile.
Image supplied.
We chose to sponsor The Media Agency Rising Star Award, specifically because in the digital arena, the landscape changes almost daily. In this fluid industry, it is essential that industry pillars recognise the need for ongoing development and robust recognition for those people who are showing talent in the media industry both as an inspiration to future talent and an ongoing guide for the industry as a whole.
The award ceremony will be held on Thursday, 14 September 2017 at The Wanderers Club in Illovo, Johannesburg.
Voting for the 9th annual Most Awards will continue until Friday, 30 June 2017. To vote, click here.
Read the original post:
The SpaceStation sponsors Media Agency Rising Star Award - Bizcommunity.com
Posted in Space Station
Comments Off on The SpaceStation sponsors Media Agency Rising Star Award – Bizcommunity.com
Why the Secret Mars Colonization? | Almine
Posted: at 5:51 am
Question: Is there any connection between the fact that the United Nations owns 68% of the national parks in the United States*, and the abnormally high number of disappearances from national parks every year?
Almine: The abductions are part of a multinational initiative, but not by the United Nations. There are several nations involved in populating the human colonies on Mars (theyre underground). This has for decades been done by kidnapping citizens from the various countries involved. Sadly, the underground colonies on Mars are where theyre being sent. For decades this has been one of the biggest causes of the millions of abductions that have happened worldwide (particularly of young people). Theyre abducted from streets, playparks and national forests. In the latter case, they blamed Bigfoot, aliens and others.
Question: What motivates these countries to colonize Mars, and why so secretive?
Almine:
The secretiveness? How are they going to explain where all the people on Mars come from? Or worse why theyve done it? And then if all destructs as they anticipate (remember, they dont know were here and are able to repair and prevent catastrophes), then how are they going to inform people that they have to be left behind while they themselves leave the Earth?
Another impetus for this secret colonization of another planet is that time traveling begins in the 2030s amongst government agencies. The time travelers have been warning of gross overpopulation reducing the quality of life substantially in the future.
Question: Will the opportunity to immigrate to Mars be open to the public in the future?
Almine: Only for large amounts of money.
Related: Why Mars Colonization is Doomed to Failure Abducting Children for Mars Colonization The Age of the Lost Children is in Full Swing (login required)
*(1972 Treaty Grants the United Nations Control over American Historical Landmarks July 2001)
View post:
Why the Secret Mars Colonization? | Almine
Posted in Mars Colonization
Comments Off on Why the Secret Mars Colonization? | Almine
Intersection: Keep Calm And Go To Mars – WMFE
Posted: at 5:51 am
Falcon 9 rocket launches Inmarsat 5 from Kennedy Space Center. Photo: Joey Roulette.
What happens if a Martian astronaut goes bonkers? 90.7sSpace reporter Brendan Byrne and WKMGs Emilee Speck take a look at the questions scientists are asking about mental well-being for Mars-bound astronauts.
Byrne says its a question which former astronaut Buzz Aldrin has been thinking about.
Hes really worried about people that get there and realize theyve made a terrible mistake.
Scientists are trying to figure out the psychological impact of a one-way mission into deep space.
Anthropologists can tell us about early colonization and how when they got on a boat they didnt know where they were going and they thought they would never return, says Speck.
And so we can look at the psychology behind that, she says.
Theres also the practical challenge of getting to Mars. SpaceX founder Elon Musk is working on a plan for a giant space craft to ferry large numbers to Mars to establish a colony.
Its an insane idea, says Byrne.
But Elon Musk has had a lot of insane ideas that have worked before.
See the original post:
Intersection: Keep Calm And Go To Mars - WMFE
Posted in Mars Colonization
Comments Off on Intersection: Keep Calm And Go To Mars – WMFE
Stephen Hawking Believes We Will Abandon Earth via Light-Based Transportation – Big Think
Posted: at 5:51 am
Stephen Hawking is fed up. He thinks the world is doomed and that we should start preparing our exit strategy now. Easier said than done. Hawking recently spoke out at the Starmus Festival of arts and sciences in Norway. In his speech, the world famous physicist slammed President Donald Trump for taking the most serious, and wrong, decision on climate change this world has seen. When asked to comment further the famouscosmologist groaned:"The Earth is under threat from so many areas that it is difficult for me to be positive.
In two previous statements, Hawking has warned that wed better formulate a workable plan B in order to punch out in the next century or so, as Earth is caught in a downward spiral he believes we cant escape. As a result, the professor suggests we find a new home planet in the next two to five centuries. The only way we can do that is to start exploring space for a suitable planet sufficient to sustain life, or even perhaps more than one. Using advanced scientific instruments, weve been able to peer into the universe like never before, Hawking said.
"When we have reached similar crises in our history, there has usually been somewhere else to colonize, he said. Columbus did it in 1492 when he discovered the New World. But now there is no new world. No Utopia around the corner." The first logical places to start are the moon and Mars. According to the BBC, Hawking called on nations to colonize the moon by 2020 and Mars by 2025.
Hawking believes one of our first moves is colonizing Mars. Getty Images.
But each is subject to cosmic radiation, long-term exposure of which could cause cancer and Alzheimers. Well need to invent proper shielding. Whats more, no one knows how a child being born in such circumstances might fare. The gravity for instance, is way different in both places than on Earth. How would this affect skeletal development? Growing up on Mars might mean never being able to set foot on the Earth, as ones skeletal system wouldnt be able to withstand the gravity.
Planet Proxima b in the Proxima Centauri system, approximately 4.5 light-years from Earth, was one such candidate Hawking mentioned. Note that one light-year is around six trillion miles (10 million km). We dont even have the cryonic process down completely yet. We can freeze a person but we dont know how to revive them. Beyond that, the distances are just mind-blowing. Even with such technology tucked under our arm, is such a feat feasible?
The renowned cosmologist said, "To go faster would require a much higher exhaust speed than chemical rockets can providethat of light itself. He added, A powerful beam of light from the rear could drive the spaceship forward. Nuclear fusion could provide 1 percent of the spaceship's mass energy, which would accelerate it to a tenth of the speed of light." Such technology is theoretical. NASA has tested an EM or impossibility drive, and other types of next generation rocketsare on the horizon.
Of course, wed have to harness the power of antimatter to achieve the kind of technological feat Hawking is proposing. Antimatter particles are puzzlingly rare in the universe, even though equal parts of matter and antimatter were supposedly present at the Big Bang. Generating enough antimatter to power a rocket borders on the fantastical. Such an engine remains, for the time being, in the theoretical stages.
Model of an antimatter rocket. NASA.
Even so the moderator, taking Hawkings suggestion as granted, feared that we might become complacent or preoccupied in an era of such technology, having the ability to observe the unexplored corners of the universe and marvel at their wonders, as one watches television. But Hawking replied that the peril the Earth is in will motivate us to take action.
Hawking said in his speech:
Human colonization on other planets is no longer science fiction. It can be science fact. The human race has existed as a separate species for about 2 million years. Civilization began about 10,000 years ago, and the rate of development has been steadily increasing. If humanity is to continue for another million years, our future lies in boldly going where no one else has gone before.
Cheesy Stark Trek line aside, Russian billionaire Yuri Milner, Facebook founder Mark Zuckerberg, and Hawking have developed an initiative called Breakthrough Starshot, which plans to comb the universe for intelligent life and Earth-like planets. They plan on sending out hundreds or even thousands of tiny spacecraft, each weighing less than one ounce, to explore the Alpha Centauri star system and see whats out there. This will be 2,000 times farther than anything from Earth has ever traveled.
This animation depicts the Breakthrough Starshot:
These little spacecraft, called nanocrafts, will be propelled by an array of powerful lasers. The lasers will hit each nanocrafts solar sail, pushing it along. With such force behind it and at such a small size, they should travel at an unheard of velocity, one fifth the speed of light. Hawking said at the announcement, "With light beams, light sails and the lightest spacecraft ever built, we can launch a mission to Alpha Centauri within a generation." So far the project has raised $100 million to explore its viability. There will be other benefits besides saving humanitys collective skin.
At the Starmus festival, Hawking commented:
Spreading out into space will completely change the future of humanity. I hope it would unite competitive nations in a single goal, to face the common challenge for us all. A new and ambitious space program would excite (young people), and stimulate interest in other areas, such as astrophysics and cosmology.
Will the Earth really perish? To hear what physicist Michio Kaku thinks, click here:
Excerpt from:
Stephen Hawking Believes We Will Abandon Earth via Light-Based Transportation - Big Think
Posted in Moon Colonization
Comments Off on Stephen Hawking Believes We Will Abandon Earth via Light-Based Transportation – Big Think
Genetic engineering tool generates antioxidant-rich purple rice – Phys.Org
Posted: at 5:50 am
June 27, 2017 A photograph of purple endosperm rice. Credit: Qinlong Zhu of the South China Agricultural University
Researchers in China have developed a genetic engineering approach capable of delivering many genes at once and used it to make rice endospermseed tissue that provides nutrients to the developing plant embryoproduce high levels of antioxidant-boosting pigments called anthocyanins. The resulting purple endosperm rice holds potential for decreasing the risk of certain cancers, cardiovascular disease, diabetes, and other chronic disorders. The work appears June 27th in the journal Molecular Plant.
"We have developed a highly efficient, easy-to-use transgene stacking system called TransGene Stacking II that enables the assembly of a large number of genes in single vectors for plant transformation," says senior study author Yao-Guang Liu of the South China Agricultural University. "We envisage that this vector system will have many potential applications in this era of synthetic biology and metabolic engineering."
To date, genetic engineering approaches have been used to develop rice enriched in beta-carotene and folate, but not anthocyanins. Although these health-promoting compounds are naturally abundant in some black and red rice varieties, they are absent in polished rice grains because the husk, bran, and germ have been removed, leaving only the endosperm.
Previous attempts to engineer anthocyanin production in rice have failed because the underlying biosynthesis pathway is highly complex, and it has been difficult to efficiently transfer many genes into plants.
To address this challenge, Liu and his colleagues first set out to identify the genes required to engineer anthocyanin production in the rice endosperm. To do so, they analyzed sequences of anthocyanin pathway genes in different rice varieties and pinpointed the defective genes in japonica and indica subspecies that do not produce anthocyanins.
Based on this analysis, they developed a transgene stacking strategy for expressing eight anthocyanin pathway genes specifically in the endosperm of the japonica and indica rice varieties. The resulting purple endosperm rice had high anthocyanin levels and antioxidant activity in the endosperm. "This is the first demonstration of engineering such a complex metabolic pathway in plants," Liu says.
In the future, this transgene stacking vector system could be used to develop plant bioreactors for the production of many other important nutrients and medicinal ingredients. For their own part, the researchers plan to evaluate the safety of purple endosperm rice as biofortified food, and they will also try to engineer the biosynthesis of anthocyanins in other crops to produce more purple endosperm cereals.
"Our research provides a high-efficiency vector system for stacking multiple genes for synthetic biology and makes it potentially feasible for engineering complex biosynthesis pathways in the endosperm of rice and other crop plants such as maize, wheat, and barley," Liu says.
Explore further: The origin and spread of 'Emperor's rice'
More information: Molecular Plant, Zhu et al.: "Development of ''Purple Endosperm Rice'' by Engineering Anthocyanin Biosynthesis in the Endosperm with a High-Efficiency Transgene Stacking System" http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30140-5 , DOI: 10.1016/j.molp.2017.05.008
Journal reference: Molecular Plant
Provided by: Cell Press
Black rice has a rich cultural history; called "Forbidden" or "Emperor's" rice, it was reserved for the Emperor in ancient China and used as a tribute food. In the time since, it remained popular in certain regions of China ...
We've all heard examples of animal altruism: Dogs caring for orphaned kittens, chimps sharing food or dolphins nudging injured mates to the surface. Now, a study led by the University of Colorado Boulder suggests some plants ...
(Phys.org)Hybrids of many plant and animal species and subspecies are sterile, and a group of researchers in China have now identified the genes that operate to make crossbred rice sterile.
The origins of rice have been cast in a new light by research publishing in the open-access journal PLoS Genetics on June 9, 2011. By reconciling two theories, the authors show that the domestication of rice occurred at least ...
Anthocyanins, plant pigments known for their health-promoting properties, are in demand for medicinal and industrial uses. Anthocyanins have become sought-after natural products, but the small number of plants that naturally ...
Anthocyanins, pigments that give plants their red, blue, or purple hues, are not typically produced in citrus fruits grown under tropical or subtropical conditions. Now, scientists have genetically engineered a lime that ...
Scientists have developed a new biological tool for examining molecules - the building blocks of life - which they say could provide new insights and other benefits such as reducing the numbers of animals used in experiments.
When insects skip the light fandango their romantic foreplay often involves some pretty crazy things like hypnotic dance moves and flashy colors. In some species it ends with a complex ejaculate package that does more than ...
A study of yeast reveals new mechanism that allows cells to adapt to environmental changes more rapidly by accelerating genetic changes around genes that boost fitness, publishing 27 June in the open access journal PLOS Biology, ...
For us humans, it goes without saying that we reward others as an indication of the gratitude we feel towards them. Scientists from the Max Planck Institutes for Evolutionary Anthropology and for Mathematics in the Sciences ...
Researchers in China have developed a genetic engineering approach capable of delivering many genes at once and used it to make rice endospermseed tissue that provides nutrients to the developing plant embryoproduce ...
In the fight against the viruses that invade everyday life, seeing and understanding the battleground is essential. Scientists at the Morgridge Institute for Research have, for the first time, imaged molecular structures ...
Please sign in to add a comment. Registration is free, and takes less than a minute. Read more
Read the rest here:
Genetic engineering tool generates antioxidant-rich purple rice - Phys.Org
Posted in Genetic Engineering
Comments Off on Genetic engineering tool generates antioxidant-rich purple rice – Phys.Org
New Documentary Challenges Views on Genetically Modified Food – Flagpole Magazine
Posted: at 5:50 am
What do you think of genetically modified organisms? Are they good or bad? Those are the type of simplified, and sometimes divisive, questions documentary filmmaker Scott Hamilton Kennedy wants to challenge.
Kennedy was a unique guest speaker at the UGA Plant Centers annual symposium on May 9. Hot on the heels of completing his latest film, Food Evolution, Kennedy spoke to a crowd of plant scientists and shared how he pursued the various angles of the GMO controversyscience, politics, activism and businessonly to find that the truth is complicated.
The GMO controversy was just waving its hands, saying this is a story thats not being told correctly, said Kennedy. It deals with huge issues in our food system, from feeding the most who have the least, to corporate greed and issues of monopolies and things like that. But it didnt seem like the full story was being told.
Kennedy will be the first to admit hes not an expert on genetic modification, but hes become very informed. He hopes his film will help shed some light on the less understood sides of the GMO debate.
UGA plant biologist Jim Leebens-Mack hopes so, too. Thats why he worked with Kennedy to organize a screening of Food Evolution at Cin in addition to presenting at the symposium.
In Athens, theres a lot of concern about people not taking the scientific perspective on things like global warming, environmental sustainability and so on, said Leebens-Mack, but GMOs are one issue where science takes a backseat to fear.
Genetic modification, also known as genetic engineering (GE), has been in practice since the early 1990s, when herbicide-tolerant corn was introduced. Today, more than 90 percent of the corn, soybeans and cotton grown in the U.S. are genetically engineered, and the Genetic Literacy Project estimates that 70 percent of the foods we buy contain GM ingredients.
GM foods have become a bogeyman, says Leebens-Mack. Like the mythical monster, fears surrounding genetic modification are ill-defined. Leebens-Mack often hears that its just not natural. His perspective is different.
As an evolutionary biologist, I know that nature has been imposing genetic modifications on plants throughout their evolutionary history, he said. Scientists use genetic modification to promote traits within a plant that growers want, whether thats resistance to certain herbicides, drought, bacteria, insects or pathogens.For example, a virus-tolerant variety of Rainbow papaya has saved Hawaiis papaya industry from ruin. That is one of the many scenarios where GE plants have obvious benefits that Kennedy explores in his film.
Leebens-Mack wants the films viewers to understand that GE technology and GMOs are not inherently good or evil. Kennedy observed that the decision to grow GE crops or organic crops depends on whats right for each farmer.
For the record, the scientific consensus is that GMOs do not present any health risk to animals or humans. Of course, there are arguments that go beyond safety and health. Kennedy and Leebens-Mack both acknowledge that GE technologies have been used by Big Ag to improve commodity crop yields.
USDA Certified Organic foods, by contrast, cannot use GE ingredients. This contributes to the idea that supporting organic farming and GE technologies are mutually exclusive, said Kennedy.
It doesnt have to be either/or, he said. There are wonderful things that we have and will continue to learn from organic farming, and there are amazing things that are being done by very smart people that want to save the planet in a sustainable way on the science side.
Rather than make blanket claims about GMOs, Leebens-Mack wants to community to start having more rational conversations about genetic modification and how it can be a useful tool for sustainable agriculture. The potential for corporate monopolies and corruption, the environmental and social impact GMOsthese may be valid concerns, says Leebens-Mack, but lets do a better job of articulating our concerns and then try to work through those.
Food Evolution (narrated by celebrity physicist Neil DeGrasse Tyson) opened nationally in theaters June 23. To start a local discussion about GMOs, your local farmer and Wayne Parrotts lab at UGA are good places to start.
Read the original here:
New Documentary Challenges Views on Genetically Modified Food - Flagpole Magazine
Posted in Genetic Engineering
Comments Off on New Documentary Challenges Views on Genetically Modified Food – Flagpole Magazine
Whole genomes may hold clues to autism, but patience is key – Spectrum
Posted: at 5:50 am
Bernie Devlin
Professor, University of Pittsburgh
Associate professor, Harvard University
Professor, University of Pittsburgh
Associate professor, Harvard University
Its been 14 years since scientists spelled out most of the more than 3 billion letters of the human genome. The feat, which took 13 years and cost just under $3 billion to complete, signaled a new era in biomedical research.
Much of human genetic research has focused on the roughly 2 percent of the genome that makes up genes, called the exome. Amino acids, the building blocks of proteins, are encoded in three-letter triplets throughout the exome. This triplet code has allowed us to predict which mutations are likely to alter the function of a protein, and which are likely to be silent.
The most severe mutations are those that disrupt the proteins critical to health and development. Natural selection acts against these changes. Some of the mutations seen in people with autism are severe and rarely seen in the general population. We have used this information to identify genes that are likely relevant to the condition.
We know relatively little, however, about the 98 percent of the genome that does not code for genes. These sweeping swaths of DNA, once blown off as junk, are now known to contain important sequences that switch genes on and off and fine-tune their expression.
Its reasonable to assume that a small subset of the mutations that occur in the noncoding genome contribute to autism. And now that the cost of sequencing a genome has dropped to about $1,500, we can finally test that assumption.
One of the enticing things about mutations in the noncoding genome is their frequency in all of us: Each of our exomes carries perhaps 1 new mutation, whereas our noncoding genomes carry around 100. But most of these mutations are surely benign, and we lack a decoder that allows us to predict which mutations are harmful.
If finding mutations tied to autism in the exome is like finding a needle in a haystack, then finding mutations in the noncoding genome is like finding a peculiar piece of hay in that stack without knowing the properties that distinguish it from the rest. If we are going to be successful in our search, we need to understand what were looking for.
It is possible that some noncoding mutations are as damaging as those in the exome. For instance, they might disrupt a stretch of DNA that regulates the expression of a key gene for brain development. But we have no way to interpret which DNA letters are crucial for the function of these regulatory regions and may therefore affect gene function when mutated.
So how can we approach this daunting problem? History suggests that we must scour the noncoding genome for mutations tied to autism agnostically, without any preconceived notions about where these mutations may be hiding. This unbiased approach has served us well in previous efforts to analyze the genome.
We expect our initial results using this approach to be lean, but we will avoid the pitfalls of a past era of human genetics when many investigators focused on candidate genes they assumed played a role in a particular condition. The record of replication from the candidate-gene approach was abysmal, and in the end very little was learned about the conditions at all. Indeed, several decades of research have taught us that scientists as a whole are not terribly prescient when it comes to predicting the genetic causes of human conditions.
We have begun the search using whole-genome sequencing data from 519 families that have one child with autism but unaffected parents and siblings. To explore these data, we have assembled a consortium of scientists with extensive expertise in many facets of human genetics, genomics, statistical genetics and computer science. Perhaps we can best liken our initial analysis to Alfred Tennysons poem The Charge of the Light Brigade, in which a confluence of circumstances led a British light cavalry unit into a battle against impossible odds.
Figuratively, like the plight of Light Brigade, the outcome of our initial advance into the noncoding genome was likely predetermined. The data from only 519 families are no match for the complexity of the noncoding genome and the sheer number of tests required to properly evaluate it. Only a strong and focused noncoding signal could overcome this testing burden, and if such a signal were present, its likely we would have seen it with other methods.
We detected a small increase in the burden of noncoding variation in individuals with autism compared with their unaffected siblings, but the risk associated with these regulatory variants does not approach the risk associated with protein-coding mutations.
We plan to continue to develop new statistical and bioinformatics methods to interpret the impact of mutations that alter gene regulation. As we amass additional whole-genome sequences, we will continue our unbiased search, and eventually, reliable insights will emerge.
It is not reasonable to expect breakthroughs at this early stage. Instead, we expect to learn much about the nature of the noncoding genome and how to analyze it. As sample sizes and knowledge increases, we will soon transition from this era of initial exploration to one of true biological discovery.
When that transition will occur is impossible to say at this point. Our proverbial haystack will not change in size, content or complexity. However, with many scientists committed to searching together, we will eventually discover the peculiar features of those pieces of hay we seek.
Bernie Devlin is professor of psychiatry at the University of Pittsburgh. Michael Talkowski is associate professor of neurology at the Center for Genomic Medicine at Massachusetts General Hospital.
View original post here:
Whole genomes may hold clues to autism, but patience is key - Spectrum
Posted in Human Genetics
Comments Off on Whole genomes may hold clues to autism, but patience is key – Spectrum
Macrauchenia: DNA solves animal riddle that Darwin couldn’t – CNN … – CNN
Posted: at 5:49 am
Macrauchenia patachonica lived during the last ice age. It resembled a bulky camel without a hump, with a long neck like that of a llama and a short trunk for a nose.
The long neck would enable the herbivore to reach leaves on plants and bushes across what is now South America and the open landscapes of Patagonia.
"It was a fairly bulky quadruped, probably not very fleet of foot," said Ross MacPhee, study co-author and curator at the American Museum of Natural History. "Its outstanding feature, however, was its nose. We have no soft tissue fossils, so we don't know whether the nose was developed into an actual trunk, like an elephant's, or was something more like a big fleshy appendage, resembling the tapir's proboscis. It would not have looked very much like anything alive today."
The nasal opening is right between the eye sockets, rather than just above the teeth.
Legendary British scientist Darwin found the first fossil of this creature, as well as those of other extinct animals that fall under the "South American native ungulates" category, in 1834. The fossils were given to Richard Owen, a British paleontologist, to study. Neither Owen or Darwin could clarify the Macrauchenia's combination of features to a modern-day counterpart or a distinct mammal lineage. But they had only a few limb bones and vertebrae to study.
The ungulates group itself is puzzling to researchers because some of them seem elephant-like, while others are more like aardvarks and moles. Owen even used an old name for the llama to come up with the genus Macrauchenia.
"What we knew for quite some time is that there is a large number of species that are put into this group, and many of them looked quite peculiar," said Michi Hofreiter, lead author of the new study and paleogenomics expert at the University of Potsdam. "They are all extinct, and we do not even know if they represent a single group or belong to different phylogenetic groups."
A previous study tried to place Macrauchenia on the tree of life by using ancient collagen. The new study, led by MacPhee and Hofreiter, built on the 2015 collagen study by extracting mitochondrial DNA from a fossil found in South America. The researchers also used a new approach to recovering Macrauchenia's genome, even without a modern analog.
"I'm pleased to see that our ancient protein results for Macrauchenia are verified using this advancement in ancient DNA alignments of a deeply diverged mammal without close modern relatives," said Frido Welker, author of the 2015 collagen study. "Overcoming the absence of a close relative while achieving a near-complete mitochondrial genome is impressive."
Before these studies using protein and DNA, arguments for where the animal belonged were derived from bone morphology, leading to a variety of possibilities.
Macrauchenia now belongs to a sister group of Perissodactyla, which includes horses, rhinos and tapirs. The two groups split about 66 million years ago, around the time a mass extinction occurred when an asteroid struck the Earth.
"We now have found a place in the tree of life for this group, so we can now also better explain how the peculiarities of these animals evolved," Hofreiter said. "And we lost a pretty old branch on the mammalian tree of life when the last member of this group went extinct."
The new study "finally settles who it is closely related to," MacPhee added. "Finally settles that its lineage had already diverged from that of modern perissodactyls as early as the close of the age of dinosaurs."
Next, the researchers want to solve the mystery of what Darwin dubbed "the strangest animal ever discovered": Toxodon. This giant animal is thought to have looked something like a fur-covered rhinoceros, with the head of a hippopotamus .
They tried to extract Toxodon DNA from fossil samples for this study, but it wasn't possible, as is often the case with fossils found in temperate climates rather than cold ones. However, solving the riddle of Macrauchenia has given them hope.
They will also use these techniques to look at fossils of ancient sloths, armadillos, anteaters and their extinct relatives, MacPhee said. The benefit of ancient proteins like collagen is that they contain genetic information and break down slowly.
Without having to rely on close living relatives of ancient, extinct creatures, researchers can use the latest technology to push their fields forward.
"We will eventually be able to recover complete genomes from many kinds of fossil species," MacPhee said. "Then, we can start comparing genes from different species and make inferences about functional differences in gene products. This will have a profound effect on the study of evolution, because it will be fully empirical, not inferential."
Filling in the gaps that these strange creatures left behind also answers basic questions about the history of our planet.
"The vast majority of all species that ever lived on Earth are now extinct," Hofreiter said. "So if we want to understand the history of life on Earth, we also need to study the extinct species."
View original post here:
Macrauchenia: DNA solves animal riddle that Darwin couldn't - CNN ... - CNN
Posted in DNA
Comments Off on Macrauchenia: DNA solves animal riddle that Darwin couldn’t – CNN … – CNN
How African Americans Use DNA Testing to Connect With Their Past – The Atlantic
Posted: at 5:49 am
In 1977, Alondra Nelson remembers lying stomach-down, head-in-hands, in front of the television, watching Alex Haleys miniseries Roots with her parents. I knew that something special was happening because my parents didnt let us watch TV in the evenings, and here, they were letting us watch eight nights in a row, she told a crowd at the Aspen Ideas Festival, which is co-hosted by the Aspen Institute and The Atlantic. They wanted us to see it for its historic nature.
The miniseries, which traced Haleys genealogy back to the Gambia, spurred many African Americans to start tracing their own ancestries. And it inspired Nelsons own interest in genealogy and the social consequences of learning about ones roots. Now, as the dean of social science at Columbia University, Nelson has spent more than a decade studying what she describes as a new groundswell of root-seekingone propelled by genetic testing.
Today, there are dozens of companies that will sequence segments of a customers DNA and tell them about their ancestry. When Nelson asked the audience how many had made use of such services, at least a dozen people raised their hands. But in 2002, the industry was a nascent one. To find its early customers, Nelson had to go to old-fashioned genealogy clubs and societies.
The history of genetics as a field is steeped in eugenics and scientific racism. And yet, Nelson says that for many African Americans, DNA testing held a special appeal because many of the traditional methods of genealogy had been complicated by the history of slavery. Records disappeared. Names changed. People were trafficked across state lines. Stories were verboten because they were too traumatic. Ancestry testing offered a way of circumventing these obstacles, and airing stories that might never otherwise have come to light. Its an interesting story about race and genetics, Nelson says. When we talk about African Americans in science, its often a story of skepticism and distrust. But this ancestry-testing story is one of pioneering early adopters who are willing to do something different.
One such pioneer was Rick Kittles, a geneticist and cancer researcher who founded a company called African Ancestry Inc. His service provided only broad inferences about where people came from, but for many customers, that was enough. It definitely wasnt perfect, but many people said that if its a choice between no information or an inference that might be slightly off, Ill take the inference, Nelson says.
As tests became more precise, those inferences often proved to be unexpectedly moving. Nelson once met a group of African Americans whose DNA suggested that they had Sierra Leonean ancestry. They met for a ceremony of remembrance on the Ashley River in South Carolina, at a ferry landing where slaves were disembarked from ships and auctioned off. The actor Isaiah Washington was there. A man cast soil and stones from Sierra Leone into the river and said a prayer.
We talk about the history of slavery in this country and it feels so abstract. But genetic ancestry testing can make it very personal, she says. The ceremony allowed for a social practice of healing, where people didnt just have to sit with the knowledge. Many of the folks I talked to tell very moving stories about new relationships they began in their communities with their genetic test results.
Nelson expands on this theme in her recent book, The Social Life of DNA. In it, she argues that DNA is more than a molecule that defines our identity; it also takes a social life beyond its influence within individual bodies. The communities that can arise from ancestry testing are a far cry from the cutesy images often used to sell ancestry tests, in which bemused people swap lederhosen for tartan. This test was not just about identity in a narcissistic way, but about people trying to reconcile the history of slavery, and scaling up from their ancestry test to what it means for the history of the U.S., says Nelson.
When Nelson first looked at ancestry tests, they were mainly of interest to the 50-plus crowd. But theyre now capturing the interest of a younger demographic who are drawn to the quantified-self movement, and the power of dramatically revealing where you came from, reality TV-style. Nelson knows that power first-hand. I didnt want to do the test, but I thought if I was going to do it, it would be with a big reveal, she says.
It happened in an Atlanta ballroom, with Rick Kittles and Isaiah Washington MCing. At the event, Martin Luther King III learned his ancestry on his mothers side traced back to Africa, while his fathers line traced to Scotland and Ireland. He told a story about how were all related in the end, and spoke about his desire to go to Europe. Marcus Garvey Jr.s son heard similar resultsa mothers line that descended from Africa and a fathers line that came from the Iberian Peninsula. He told a story that highlighted the horrors of slavery. It was an example about how these results, even when theyre very similar, get taken up into these stories that are important to us, says Nelson.
She learned that her mitochondrial DNA (which passes down the female line) traced back to the Bamileke people of Cameroona fact that delighted her mother. She couldnt wait to tell everyone, Nelson says. And then soon after, she developed a close relationship with a woman from Cameroon, whose family would spend holidays with us. Her son had grandparents day at school, and since his grandparents are in Cameroon, he invited my motherthe DNA Cameroonianto be his grandparent for the day.
View post:
How African Americans Use DNA Testing to Connect With Their Past - The Atlantic
Posted in DNA
Comments Off on How African Americans Use DNA Testing to Connect With Their Past – The Atlantic







