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Monthly Archives: May 2014
Misguided DNA-repair proteins caught in the act
Posted: at 8:43 am
Accumulation of DNA damage can cause aggressive forms of cancer and accelerated aging, so the body's DNA repair mechanisms are normally key to good health. However, in some diseases the DNA repair machinery can become harmful. Scientists led by a group of researchers at The Scripps Research Institute (TSRI) in La Jolla, CA, have discovered some of the key proteins involved in one type of DNA repair gone awry.
The focus of the new study, published in the May 22, 2014 edition of the journal Cell Reports, is a protein called Ring1b. The TSRI researchers found that Ring1b promotes fusion between telomeres -- repetitive sequences of DNA that act as bumpers on the ends of chromosomes and protect important genetic information. The scientists also showed inhibiting this protein can significantly reduce the burden on cells affected by such telomere dysfunction.
"We are very far from therapy, but I think a lot of the factors we've identified could play key roles in processing dysfunctional telomeres, a key event in tumorigenesis [cancer initiation]," said Eros Lazzerini Denchi, assistant professor at TSRI who led the study.
The Trouble with Telomeres
Humans are born with long telomeres, but these become shorter every time a cell in the body divides. With age, telomeres become very short, especially in tissues that have high proliferation rate.
That's when the problems start. When telomeres become too short, they lose their telomere protective cap and become recognized by the DNA repair machinery proteins. This can lead to the fusion of chromosomes "end-to-end" into a string-like formation.
Joined chromosomes represent an abnormal genomic arrangement that is extremely unstable in dividing cells. Upon cell division, joined chromosomes can rupture, creating new break points that can further re-engage aberrant DNA repair. These cycles of fusion and breakage cause a rampant level of mutations that are fertile ground for cancer.
"You basically scramble the genome, and then you have lots of chances to select very nasty mutations," said Lazzerini Denchi.
Setting a DNA Trap
To understand how to prevent these deleterious fusions, Lazzerini Denchi and his colleagues wanted to identify all the repair factors involved.
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Misguided DNA-repair proteins caught in the act
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Kiwi DNA Link Spurs Rethink Of Flightless Birds
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WELLINGTON, New Zealand (AP) Research linking New Zealand's diminutive kiwi with a giant extinct bird from Africa is prompting scientists to rethink how flightless birds evolved.
A report published Friday in the journal Science says DNA testing indicates the chicken-size kiwi's closest relative is the elephant bird from Madagascar, which grew up to 3 meters (10 feet) high and weighed up to 250 kilograms (550 pounds) before becoming extinct about 1,000 years ago.
The authors say the results contradict earlier theories that the kiwi and other flightless birds, including the ostrich and emu, evolved as the world's continents drifted apart about 130 million years ago.
Instead, they say, it's more likely their chicken-size, flight-capable ancestors enjoyed a window of evolutionary ascendancy about 60 million years ago, after dinosaurs died out and before mammals grew big.
Those birds, the authors say, likely flew between the continents, with some staying and becoming the large, flightless species we know today.
Alan Cooper, a professor at the University of Adelaide in Australia and a co-author of the paper, said the DNA results came as a huge surprise given the differences in size and location between the kiwi and elephant bird.
"This has been an evolutionary mystery for 150 years. Most things have been suggested but never this," he said. "The birds are about as different as you can get in terms of geography, morphology and ecology."
Cooper, a New Zealander by birth, is hoping the paper will also bring him a measure of redemption.
That's because two decades ago, Cooper and other scientists discovered genetic links between the kiwi and two Australian flightless birds, the cassowary and the emu. That led to New Zealanders believing their iconic bird might have come from Australia, a traditional rival.
"There was a huge outpouring of angst," Cooper said. "New Zealanders weren't too impressed."
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Kiwi DNA Link Spurs Rethink Of Flightless Birds
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Comb Jelly Genome Grows More Mysterious
Posted: at 8:43 am
The publication of the draft genetic sequence of a comb jelly reveals a nervous system like no other
Pleurobrachia bachei lacks many common genes. Credit:Leonid L. Moroz/Mathew Citarella
Comb jellies, or ctenophores, look like tiny disco balls and propel themselves around oceans using specialized hairs, lapping up small prey with their sticky tentacles. They are aliens whove come to Earth, says Leonid Moroz, a neuroscientist at the University of Florida in St Augustine.
The genome of the Pacific sea gooseberry (Pleurobrachia bachei), which Moroz and his team report online today inNature, adds to the mystery of ctenophores (L. L. Morozetal. Nature http://dx.doi.org/10.1038/nature13400; 2014). The sequence omits whole classes of genes found in all other animals, including genes normally involved in immunity, development and neural function. For that reason, the researchers contend that ctenophores evolved a nervous system independently.
Ctenophores have long vexed taxonomists. Their resemblance to jellyfish earned them a spot on the tree of life as a sister group to cnidarians (the phylum that includes jellyfish). On the basis of their nervous systems which can detect light, sense prey and move musculature many researchers had them branching off from the common ancestor of other animals after the sponges and flattened multicellular blobs known as placozoans, neither of which have a nervous system. Now armed with data showing that ctenophores lack many common genes, some scientists contend that these are the closest living relatives to the first animals.
Morozs team argues that theP.bacheigenome, along with gene-expression data from other ctenophores, supports this theory. For example, microRNAs, which regulate gene expression in other animals, are completely missing from the sea gooseberry genome.
The biggest surprise, Moroz says, was the absence of many standard components of a nervous system. Nearly all known nervous systems use the same ten primary neurotransmitters; the Pacific sea gooseberry seems to employ just one or two. Moroz speculates that the organism might complete its nervous system using molecules that researchers have not yet found in this species, such as specialized protein hormones.
The uniqueness of this ctenophores nervous system leads Moroz and his team to argue that it must have evolved independently, after the ctenophore lineage branched off from other animals some 500million years ago. Everyone thinks this kind of complexity cannot be done twice, Moroz says. But this organism suggests that it happens.
Gert Wrheide, an evolutionary geobiologist at Ludwig Maximilian University in Munich, Germany, is intrigued by the theory that the nervous system evolved twice in different animal branches, but disputes that ctenophores are the closest relatives of the first animals.
The common ancestor of all animals may have looked nothing like comb jellies, and theP.bachei nervous system may be a more recent adaptation, he says. I think the last word is not spoken yet on where the ctenophores go.
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Comb Jelly Genome Grows More Mysterious
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META-Health University #6 – Skin Eczema Inflammation. What would you do? – Video
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META-Health University #6 - Skin Eczema Inflammation. What would you do?
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META-Health University #6 - Skin Eczema Inflammation. What would you do? - Video
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Natural Eczema Fix+Natural Eczema Fix Product Review-Natural Eczema Fix Reviews - Video
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Testifies that round wounds on child were eczema
Posted: at 8:43 am
EDWARDSVILLE A Livingston mans eczema defense and pleas to the public failed him, as a jury Wednesday took just 27 minutes to convict him of aggravated battery to a child.
Eric Duane Hurley, 32, took the witness stand in his own behalf Wednesday, and insisted the circular wounds, described by the victim and her doctor as burns, were sudden outbursts of eczema, an allergic skin rash. The child had bouts of eczema, but doctors testified that the skin rash did not resemble the round wounds seen in pictures shown to the jury.
Hurley was arrested and charged in October 2010, about two weeks after the child reported to her biological father that Mr. Eric had burned her with a cigarette because she would not stop crying.
Hurley and the childs mother appeared on the Dr. Phil Show in August 2012. The child had just turned 3 when she was burned and is now 6.
The father took her to a Litchfield emergency room, and hospital personnel called the Illinois Department of Children and Family Services, which conducted an investigation. Shortly after that, the mother gave up custody, and the child was placed in custody of the father.
The father took the child to her pediatrician, Dr. Chris Wangard, who examined her. The doctor, a board certified pediatrician, testified this week that the marks were intentionally inflicted wounds, consistent with cigarette burns. He told the jury he had treated the child for eczema, and the burn marks did not look like the allergic skin rash.
Hurleys own witness, Dr. Barry Zeffren, a board certified allergist, testified that eczema has non-specific borders, contrary to the round marks created by the cigarette burns. The doctor saw the child almost a year before the burning incident and confirmed that she suffered from eczema.
Defense attorney Steve Griffin, in his closing argument, also advanced the eczema theory, but offered an alternative theory, that the mother burned the child.
I dont believe they were burns, at all, Hurley testified. He vigorously denied burning the child.
Hurley and the victims mother appeared on the Dr. Phil Show in 2012 to deny burning the 3-year-old child, and apparently Hurley posted comments on The Telegraphs Facebook page Tuesday evening claiming that the story of the burns was made up by the childs biological father in the midst of a custody battle.
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Testifies that round wounds on child were eczema
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University of Maryland Researchers Identify Mutation in Fat-Storage Gene That Appears to Increase Type 2 Diabetes Risk
Posted: at 8:42 am
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Newswise BALTIMORE May 21, 2014. Researchers at the University of Maryland School of Medicine have identified a mutation in a fat-storage gene that appears to increase the risk for type 2 diabetes and other metabolic disorders, according to a study published online today in the New England Journal of Medicine.
The researchers discovered the mutation in the hormone-sensitive lipase (HSL) gene by studying the DNA of more than 2,700 people in the Old Order Amish community in Lancaster County, Pa. HSL is a key enzyme involved in breaking down stored fat (triglycerides) into fatty acids, thereby releasing energy for use by other cells.
We found that Amish people with this mutation have defects in fat storage, increased fat in the liver, high triglycerides, low "good" (HDL) cholesterol, insulin resistance and increased risk of developing type 2 diabetes, says the studys senior author, Coleen M. Damcott, Ph.D., an assistant professor of medicine in the Division of Endocrinology, Diabetes and Nutrition and member of the Program for Personalized and Genomic Medicine at the University of Maryland School of Medicine.
In this study, 5.1 percent of the Old Order Amish study participants had at least one copy of the mutation. Four people had two copies of the mutation and consequently produced no HSL enzyme, Dr. Damcott says. The mutation is less common in non-Amish Caucasians of European descent (0.2%), thus the higher prevalence of the mutation in the Amish makes it possible to characterize its full range of effects.
Future studies of this gene will allow us to look more closely at the effects of its deficiency on human metabolism to better understand the function of the HSL protein and its impact on fat and glucose metabolism, Dr. Damcott says. These studies will also examine the potential of using HSL as a drug target for treating type 2 diabetes and related complications.
She notes that type 2 diabetes is a complex disease whose susceptibility is often determined by interactions between genetics and lifestyle factors, such as overeating and physical inactivity. Susceptibility genes for diabetes may be involved in several different metabolic pathways in the body, including storage and release of fat for energy.
Discovery of this mutation adds to the growing list of insights gained from genomic studies that can be used to develop new treatments and customize existing treatments for type 2 diabetes and related metabolic disorders, Dr. Damcott says.
E. Albert Reece, M.D., Ph.D., M.B.A., vice president for medical affairs at the University of Maryland and the John Z. and Akiko K. Bowers Distinguished Professor and dean of the University of Maryland School of Medicine, says, This discovery offers intriguing new evidence of how genetics may play a role in how people develop type 2 diabetes and provides a possible target for medical intervention. Through our Program for Personalized and Genomic Medicine, we are always striving to devise effective therapies to fit an individuals genetic make-up.
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University of Maryland Researchers Identify Mutation in Fat-Storage Gene That Appears to Increase Type 2 Diabetes Risk
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Study shows how common obesity gene contributes to weight gain
Posted: at 8:42 am
PUBLIC RELEASE DATE:
22-May-2014
Contact: Karin Eskenazi ket2116@cumc.columbia.edu 212-342-0508 Columbia University Medical Center
NEW YORK, NY (May 22, 2014) Researchers have discovered how a gene commonly linked to obesityFTOcontributes to weight gain. The study shows that variations in FTO indirectly affect the function of the primary cilium, a little-understood hair-like appendage on brain and other cells. Specific abnormalities of cilium molecules, in turn, increase body weight, in some instances, by affecting the function of receptors for leptin, a hormone that suppresses appetite. The findings, made in mice, suggest that it might be possible to modify obesity through interventions that alter the function of the cilium, according to scientists at Columbia University Medical Center (CUMC).
"If our findings are confirmed, they could explain how common genetic variants in the gene FTO affect human body weight and lead to obesity," said study leader Rudolph L. Leibel, MD, the Christopher J. Murphy Memorial Professor of Diabetes Research, professor of pediatrics and medicine, and co-director of the Naomi Berrie Diabetes Center at CUMC. "The better we can understand the molecular machinery of obesity, the better we will be able to manipulate these mechanisms and help people lose weight."
The study was published on May 6 in the online edition of Cell Metabolism.
Since 2007, researchers have known that common variants in the fat mass and obesity-associated protein gene, also known as FTO, are strongly associated with increased body weight in adults. But it was not understood how alterations in FTO might contribute to obesity. "Studies have shown that knocking out FTO in mice doesn't necessarily lead to obesity, and not all humans with FTO variants are obese," said Dr. Leibel. "Something else is going on at this location that we were missing."
In experiments with mice, the CUMC team observed that as FTO expression increased or decreased, so did the expression of a nearby gene, RPGRIP1L. RPGRIP1L is known to play a role in regulating the primary cilium. "Aberrations in the cilium have been implicated in rare forms of obesity," said Dr. Leibel. "But it wasn't clear how this structure might be involved in garden-variety obesity."
Dr. Leibel and his colleague, George Stratigopoulos, PhD, associate research scientist, hypothesized that common FTO variations in noncoding regions of the gene do not change its primary function, which is to produce an enzyme that modifies DNA and RNA. Instead, they suspected that FTO variations indirectly affect the expression of RPGRIP1L. "When Dr. Stratigopoulos analyzed the sequence of FTO's intronits noncoding, or nonprotein-producing, portionwe found that it serves as a binding site for a protein called CUX1," said Dr. Leibel. "CUX1 is a transcription factor that modifies the expression of RPGRIP1L."
Next, Dr. Stratigopoulos set out to determine whether RPGRIP1L plays a role in obesity. He created mice lacking one of their two RPGRIP1L genes, in effect, reducing but not eliminating the gene's function. (Mice that lack both copies of the gene have several serious defects that would obscure the effects on food intake.) Mice with one copy of RPGRIP1L had a higher food intake, gained significantly more weight, and had a higher percentage of body fat than controls.
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Study shows how common obesity gene contributes to weight gain
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