Monthly Archives: March 2014

New San Diego Company Targets Aging With Lots (And Lots) Of Genome Sequencing

Posted: March 6, 2014 at 7:43 am

J. Craig Venter was one of the first scientists to sequence a human genome. A decade later, he's hoping to push genomics forward again with a new San Diego-based company.

In its Tuesday launch, Human Longevity Inc. outlined its goal to better understand the aging process by sequencing 40,000 genomes in its first year.

The scale of Venter's latest effort wouldn't be possible without progress made by another San Diego company, Illumina. Human Longevity Inc will rely on Illumina's latest gene sequencing technology, which brings the cost of sequencing an individual genome down to $1,000. That's quite a price cut from $100 million, the original cost of sequencing when Venter raced to complete the first genome.

Human Longevity co-founder Peter Diamandis believes it's now feasible to study enough sick and healthy people to pinpoint the genes driving long, healthy lifespans.

"We're going to be creating one of the world's largest databases," Diamandis said. "It will allow us to really unlock what's going on why some people live to be centenarians and why some people don't."

Consenting patients at UC San Diego's Moores Cancer Center will be among the first to have their genome sequenced by Human Longevity Inc. The company also wants to study healthy individuals 100 years and older.

Human Longevity plans to make money by eventually selling their data to researchers and biotech companies. And Diamandis thinks San Diego is a perfect home base for the new company.

"Just like Silicon Valley was the gravitational center for a lot of the computer and network and online startups, I think we're going to see San Diego become the gravitational center for a lot of biologics," he said.

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New San Diego Company Targets Aging With Lots (And Lots) Of Genome Sequencing

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Eczema Special on Arogya Mantra (Epi 7 part 2) – Dr. Chauhan’s TV Show on IBN7 – Video

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Skin eczema psorasis – Video

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Skin eczema psorasis

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Covering Psoriasis Outbreaks – Video

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Covering Psoriasis Outbreaks

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Psoriasis Cure – how I used a juice diet to change my skin – part 1 – Video

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Psoriasis Cure - how I used a juice diet to change my skin - part 1
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Ellinor berattar om sin psoriasis for killarna – Top Model Sverige – Video

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Psoriasis Eczema Dry Skin ADD ADHD Diet #33 – Video

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Acne , Eczema, Psoriasis, Varicose Veins – Video

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Gene-editing method tackles HIV in first clinical test

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NIBSC/Science Photo Library

HIV attacks a type of immune cell known as a T cell (shown here) using a protein encoded by the CCR5 gene.

A clinical trial has shown that a gene-editing technique can be safe and effective in humans. For the first time, researchers used enzymes called zinc-finger nucleases (ZFNs) to target and destroy a gene in the immune cells of 12 people with HIV, increasing their resistance to the virus to the virus. The findings are published today in The New England Journal of Medicine1.

This is the first major advance in HIV gene therapy since it was demonstrated that the Berlin patient Timothy Brown was free of HIV, says John Rossi, a molecular biologist at the Beckman Research Institute of the City of Hope National Medical Center in Duarte, California. In 2008, researchers reported that Brown gained the ability to control his HIV infection after they treated him with donor bone-marrow stem cells that carried a mutation in a gene called CCR5. Most HIV strains use a protein encoded by CCR5 as a gateway into the T cells of a hosts immune system. People who carry a mutated version of the gene, including Brown's donor, are resistant to HIV.

But similar treatment is not feasible for most people with HIV: it is invasive, and the body is likely to attack the donor cells. So a team led by Carl June and Pablo Tebas, immunologists at the University of Pennsylvania in Philadelphia, sought to create the beneficial CCR5 mutation in a persons own cells, using targeted gene editing.

The researchers drew blood from 12 people with HIV who had been taking antiretroviral drugs to keep the virus in check. After culturing blood cells from each participant, the team used a commercially available ZFN to target the CCR5 gene in those cells. The treatment succeeded in disrupting the gene in about 25% of each participants cultured cells; the researchers then transfused all of the cultured cells into the participants. After treatment, all had elevated levels of T cells in their blood, suggesting that the virus was less capable of destroying them.

Six of the 12 participants then stopped their antiretroviral drug therapy, while the team monitored their levels of virus and T cells. Their HIV levels rebounded more slowly than normal, and their T-cell levels remained high for weeks. In short, the presence of HIV seemed to drive the modified immune cells, which lacked a functional CCR5 gene, to proliferate in the body. Researchers suspect that the virus was unable to infect and destroy the altered cells.

They used HIV to help in its own demise, says Paula Cannon, who studies gene therapy at the University of Southern California in Los Angeles. They throw the cells back at it and say, Ha, now what?

In this first small trial, the gene-editing approach seemed to be safe: Tebas says that the worst side effect was that the chemical used in the process made the patients bodies smell bad for several days.

The trial isnt the end game, but its an important advance in the direction of this kind of research, says Anthony Fauci, director of the US National Institute of Allergy and Infectious Diseases in Bethesda, Maryland. Its more practical and applicable than doing a stem-cell transplant, he says, although it remains to be seen whether it is as effective.

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Can Gene Therapy Cure HIV?

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Engineering a patients own immune cells to resist HIV could eliminate the need for lifelong antiretroviral therapies.

The immune cells of HIV patients can be genetically engineered to resist infection, say researchers. In a small study in humans, scientists report that by creating a beneficial mutation in T cells, they may be able to nearly cure patients of HIV.

In a study published in the New England Journal of Medicine on Wednesday, researchers report that they can use genome editing to re-create the rare mutations responsible for protecting about 1 percent of the population from the virus in infected patients. They report that some of the patients receiving the genome-modifying treatment showed decreased viral loads during a temporary halt of their antiretroviral drugs. In one patient, the virus could no longer be detected in his blood.

Zinc-finger nucleases are one of a few genome-editing tools that researchers use to create specific changes to the genomes of living organisms and cells (see Genome Surgery). Scientists have previously used genome-editing techniques to modify DNA in human cells and nonhuman animals, including monkeys (see Monkeys Modified with Genome Editing). Now, the NEJM study suggests the method can also be safely used in humans.

From each participating patient, the team harvested bone marrow stem cells, which give rise to T cells in the body. They then used a zinc finger nuclease to break copies of the CCR5 gene that encodes for proteins on the surface of immune cells that are a critical entry point of HIV. The stem cells were then infused back into each patients bloodstream. The modification process isnt perfect, so only some of the cells end up carrying the modification. About 25 percent of the cells have at least one of the CCR5 genes interrupted, says Edward Lanphier, CEO of Sangamo Biosciences, the Richmond, California, biotech company that manufactures zinc finger nucleases.

Because the cells are a patients own, there is no risk of tissue rejection. The modified stem cells then give rise to modified T cells that are more resistant to infection by HIV, say the researchers.

One week after the infusion, researchers were able to find modified T cells in the patients blood. Four weeks after the infusion, six of the 12 patients in the study temporarily stopped taking their antiretroviral drugs so the researchers could assess the effect of the genome-editing treatment on the amount of the virus in the patients bodies. In four of these patients, the amount of HIV in the blood dropped. In one patient, the virus could no longer be detected at all. The team later discovered that this best responder had naturally already had one mutated copy of the CCR5 gene.

Patients who carry one broken copy of the CCR5 progress to AIDS more slowly than those who dont, says Bruce Levine, a cell and gene therapy researcher at the University of Pennsylvania School of Medicine and coauthor on the study. Because all of the cells in that best-responder patient already carried one disrupted copy of CCR5, the modification by the zinc finger nuclease led to T cells with no functional copies of the gene. That means the cells are fully resistant to HIV infection. The team is now working to increase the number of immune cells that end up carrying two broken copies of CCR5.

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