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Monthly Archives: January 2014
The $1,000 genome could be yours—if you spend $10 million on equipment
Posted: January 15, 2014 at 6:44 pm
BusinessWire
Yesterday, the company that leads the field in DNA sequencing machines announced that it was preparing to sell systems that would finally put a major milestone in reach: the $1,000 genome. This is a notable breakthrough as it's been less than a decade since a genome cost over a quarter-million dollars. While the price may be revolutionary, the system itself is an evolution of existing technology, built up to provide massive economies of scale.
The foundation of the new system is a sequencing machine that improves a bit on the company's existing hardware, providing more individual sequencing reactions at the same time in each machine (6-8 billion reactions in each machine) and speeding up the actual reactions so that more gets done within a 24-hour period. The system itself then clusters 10 of these sped-up machines. The cluster of 10, according to Matthew Herper at Forbes, will set you back $10 million.
Despite the high cost of entry, however, Illumina claims that the amortized price is included in their $1,000 figureas are the costs of preparing the DNA and consumables used during the reactions, even the labor needed to get it all to happen. In other words, a single genome will still cost a fortune; buying the system and cranking out genomes nonstop for a few years will mean that the average cost drops to near the $1,000 price tag.
The cluster itself will be impressive. Each machine will churn out 600 Gigabases each day. Each copy of the human genome is only about three billion base pairs, and sequencing each of those bases an average of 30 times is typical for a lot of genome work, which means that a single genome will only take up 15 percent of a single machine's daily capacity. Spread out over a year, Illumina estimates that the cluster can output about 18,000 genomes every year. Your mileage may vary.
A number of large genome sequencing centers have already signed up for delivery of these systems, so they'll have an almost immediate impact in the academic world. But the $1,000 genome is mostly a figure that will be appealing for consumers. Unfortunately, the enormous up-front costs of the system make it unlikely that anyone's going to be rushing out to buy one of these so that they can turn around and offer its benefits to consumers, given that the consumer market is essentially nonexistent right now.
For more details, you can read Illumina's description of the system.
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The $1,000 genome could be yours—if you spend $10 million on equipment
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Free speech doesn't trump others' rights
Posted: at 6:44 pm
I enjoyed Leonard Pitts' article in The News-Gazette about freedom of speech on Jan. 8.
I remind my kids, there is no such thing as freedom of speech in a civil society, without consequences, depending on the situation. For example, you cannot call your teacher a "blank" at Parkland College and then say it's your freedom of speech. Whatever one says has parameters everywhere.
I will never understand how people throw the words "freedom of speech" around as if were a blanket ability to say whatever they want to whomever they want.
I am glad that my rights are not in second place to be called names, as a person walks by my yard and I am outside and they feel like saying something to that effect.
Everywhere one goes school, work, a theater there are rules that keep others safe from the verbal assault of an other.
The actual intention of one's right to verbalize freely was intended to allow people to voice their opinions of mature content against or for their government, religion and the like, without being carted off to jail. It was not intended for idiots to say whatever they want and hide behind the "I can say what I want" card.
I also appreciate Mr. Pitts bringing up the "Duck Dynasty" remarks by Phil Robertson about encouraging men to take a bride of 15 or 16 years of age. Comments like that make me embarrassed to say that I may be in the same racial category as Mr. Robertson, and I can say that.
CYNTHIA HARMON
Champaign
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Free speech doesn't trump others' rights
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What is the secret to your longevity? (+video)
Posted: at 6:43 pm
Human beings and other primates have an extremely slow metabolism rate. They burn almost 50 percent fewer calories each day than other mammals, which is why they have a longer lifespan, say scientists.
The key to longevity is a slow metabolism rate, say scientists.
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Humans and other primates burn 50 percent fewer calories each day than other mammals and due to their low metabolism rate, they have a longer life span, according to a paper published in the Proceedings of the National Academy of Sciences.
Overall, 17 primate species, such as humans, gorillas, and mouse lemurs were examined for the purpose of the study.
The international group of scientists who carried out the study worked with animals in zoos, sanctuaries in Africa, and in the wild.
Daily energy expenditure of the primates was calculated using a technique called "doubly labeled water," Herman Pontzer, an anthropologist at Hunter College in New York and the lead author of the study, told The Monitor.
Water contains hydrogen and oxygen. Some of the hydrogen and oxygen in the water were being replaced with their variants, also called isotopes, Dr. Pontzer says. After animals drink water, these isotopes would then act as tracers and their presence could be found in their urine. By determining the concentration of isotopes from the urine sample, Pontzer and his team determined how much carbon dioxide the body produced. Over a 10-day period, scientists measured the number of calories primates burned, says Pontzer.
Comparing the results of the experiment with similar data from other studies, the team compared daily energy expenditure among primates to that of other mammals, according to a press release by Chicago's Lincoln Park Zoo. Chimpanzees and gorillasfrom the zoo were examined for the study.
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What is the secret to your longevity? (+video)
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Higher hormone oxytocin levels in chimpanzees who share food
Posted: at 6:43 pm
11 hours ago After hunting chimpanzees share a red colobus monkey. Credit: Roman M. Wittig / Ta Chimpanzee Project
The ability to form long-term cooperative relationships between unrelated individuals is one of the main reasons for human's extraordinary biological success, yet little is known about its evolution and mechanisms. The hormone oxytocin, however, plays a role in it. Researchers of the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, measured the urinary oxytocin levels in wild chimpanzees after food sharing and found them to be elevated in both donor and receiver compared to social feeding events without sharing. Furthermore, oxytocin levels were higher after food sharing than after grooming, another cooperative behaviour, suggesting that food sharing might play a more important role in promoting social bonding. By using the same neurobiological mechanisms, which evolved within the context of building and strengthening the mother-offspring bond during lactation, food sharing might even act as a trigger for cooperative relationships in related and unrelated adult chimpanzees.
Humans and a few other social mammals form cooperative relationships between unrelated adults that can last for several months or years. According to recent studies the hormone oxytocin, which facilitates bonding between mother and offspring, likely plays a role in promoting these relationships. In chimpanzees, for instance, increased urinary oxytocin levels are linked to grooming between bonding partners, whether or not they are genetically related to each other.
To examine the ways in which oxytocin is associated with food sharing, Roman Wittig and colleagues of the Max Planck Institute for Evolutionary Anthropology in Leipzig have collected and analyzed 79 urine samples from 26 wild chimpanzees from Budongo Forest in Uganda within one hour after the chimpanzees either shared food or socially fed without sharing. The result: A chimpanzee's urine contained significantly higher levels of oxytocin after sharing food with another group member than just after feeding socially regardless whether the animal was the donor or the receiver of the food. "Increased urinary oxytocin levels were independent of whether subjects gave or received food, shared with kin or non-kin, shared with an established bond partner or not, or shared meat or other food types", says Roman Wittig.
In addition, the researchers found that the oxytocin levels associated with food sharing were higher than those associated with grooming, indicating that the rarer food sharing has a stronger bonding effect than the more frequently occurring grooming. "Food sharing may be a key behaviour for social bonding in chimpanzees", says Wittig. "As it benefits receivers and donors equally, it might even act as a trigger and predictor of cooperative relationships."
The researchers further suggest that food sharing likely activates neurobiological mechanisms that originally evolved to support mother-infant bonding during lactation. "Initially, this mechanism may have evolved to maintain bonds between mother and child beyond the age of weaning", says Wittig. "It may then have been hitch-hiked and is now also promoting bond formation and maintenance in non-kin cooperative relationships."
The Latin roots of the word companion ('com = with' and 'panis = bread') may indicate a similar mechanism to build companionship in humans. Whether human urinary oxytocin levels also increase after sharing a meal with others will be a subject for future studies.
Explore further: Chimpanzees: Hormone oxytocin likely to play key role in maintaining social relations with cooperation partners
More information: Roman M. Wittig, Catherine Crockford, Tobias Deschner, Kevin E. Langergraber, Toni E. Ziegler and Klaus Zuberbhler, Food sharing is linked to urinary oxytocin levels and bonding in related and unrelated wild chimpanzees, Proceedings of the Royal Society B, 15 January 2014, DOI: dx.doi.org/10.1098/rspb.2013.3096
Animals which maintain cooperative relationships show gains in longevity and offspring survival. However, little is known about the cognitive or hormonal mechanisms involved in cooperation. Researchers of ...
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Higher hormone oxytocin levels in chimpanzees who share food
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Full Length Lasik Surgery Results – Lasik Pro (April 2012) Operating – Video
Posted: at 6:43 pm
Full Length Lasik Surgery Results - Lasik Pro (April 2012) Operating
https://www.facebook.com/technologytiime Best thing I could have EVERY done in my life Big thanks to the Lasik Pro team in Frederick MD I can enjoy life with...
By: Zeinab Lane
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Full Length Lasik Surgery Results - Lasik Pro (April 2012) Operating - Video
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Poor living conditions leave toddler aching
Posted: at 6:43 pm
One Hammanskraal familys poor living conditions could be exacerbating their sons chronic skin condition as they continue to wait for government housing.
The Seemise family says crowded conditions and a lack of water, electricity make Masegos eczema harder to deal with
In 2009, 4-year-old Masego Seemise developed eczema, a chronic condition in which a persons skin becomes inflamed and itchy.
Masegos mother, Mirriam, says she never knew about the condition until her toddler began crying and scratching himself until he bled one afternoon.
I took him to Refentse Clinic with little knowledge that it would be the start of a life-long illness, she tells OurHealth. From Refentse, they referred me to Dr. George Mukhari Hospital (where) the doctor said it was eczema.
Environmental factors such as humidity, pollen or pet hair can aggravate eczema. Mirriam says she thinks the familys shack, which Masego shares with 11 others, may be making his eczema worse.
The doctor says the disease may be caused by the humid environment we live in, she says. I believe our living conditions might be (making it worse) because he scratches a lot when its hot.
The familys shack has no water or electricity. Mirriam claims that the family applied for an RDP house ten years ago and that they have been waiting ever since.
No one in the family is employed, and Mirriam is unable to seek work because she must care for her mentally ill mother. The family survives on social grants but these are not enough to take care of all them, she adds.
Xoliswa Nobongoza, a neighbour, thinks that provision of basic needs like housing, water and electricity might be of assistance to the Seemise family.
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Poor living conditions leave toddler aching
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Psoriasis – Psoriasis Free For Life – Video
Posted: at 6:43 pm
Psoriasis - Psoriasis Free For Life
Psoriasis - Psoriasis Free For Life Be Psoriasis Free here: http://bit.ly/1ajHHfy Psoriasis - Psoriasis Free For Life How I Uncovered the Disturbing Secret Cause of Psoriasis That Most Doctors...
By: Healthylife4always
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Psoriasis - Psoriasis Free For Life - Video
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biospray for Psoriasis – Video
Posted: at 6:43 pm
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Heroin addict with severe Psoriasis – Video
Posted: at 6:43 pm
Heroin addict with severe Psoriasis
Shanki has severe Psoriasis, he is sleeping rough in London, he is addicted to heroin and crack and is an illegal immigrant.
By: Jonny Hallam
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Heroin addict with severe Psoriasis - Video
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Genes: MedlinePlus Medical Encyclopedia – National Library of …
Posted: at 6:43 pm
A gene is a short piece of DNA. Genestells the body how to build a specific proteins. There are about 30,000 genes in each cell of the human body. Together, these genes make up the blueprint for the human body and how it works.
A person's genetic makeup is called a genotype.
Genes are made of DNA. Strands ofDNA strands make up part of your chromosomes. Chromosomes have matching pairs of one copy of a specific gene. The gene occurs in the same position on each chromosome.
Genetic traits, such as eye color, are dominant or recessive:
Many personal characteristics, such as height, are determined by more than one gene. However, some diseases, such as sickle cell anemia, can be caused by a change in a single gene.
Updated by: David C. Dugdale, III, MD, Professor of Medicine, Division of General Medicine, Department of Medicine, University of Washington School of Medicine. Also reviewed by A.D.A.M. Health Solutions, Ebix, Inc., Editorial Team: David Zieve, MD, MHA, David R. Eltz, Stephanie Slon, and Nissi Wang.
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