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Daily Archives: June 14, 2013
DNA ACTIVATION QUESTIONS ( 2 ) – Video
Posted: June 14, 2013 at 12:45 am
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DNA discovery could have been earlier if not for ‘mistaken decision’ by Rosalind Franklin
Posted: at 12:45 am
Instead, she focused on DNA-A, which forms a more compact and complex helix and so is harder to understand from x-ray diffraction patterns used to image the molecule.
In a letter to the Times newspaper, Mrs Glynn said: "Because the A form gave clearer diffraction patterns she concentrated first on that form with hindsight that was a mistaken decision.
"But a letter (discovered in 2010) written by Francis Crick to Maurice Wilkins in June 1953 suggests that, in Rosalinds situation, Crick might have taken the same decision: This is the first time I have had an opportunity for a detailed study of the picture of Structure A, and I must say I am glad I didnt see it earlier, as it would have worried me considerably.
Mrs Glynn was responding to criticism levelled at her sister by James Watson, one of the Cambridge University scientists who wrote the paper that first proposed DNA's helical structure.
Speaking at the Cheltenham Science Festival last week, Dr Watson accused Dr Franklin of failing to understand the significance of her work and for sitting on her findings for eight months.
He said: "I thought she shouldn't get a prize for being wrong, stubborn and not getting the answer.
"Her own manuscript has the date March 17, 1953, when she concluded DNA was two chains twisted around each other.
"That was more than two weeks after we'd found the answer.
"And when I had seen her at the end of January she got angry when I sad that DNA was helical ... I thought she might hit me."
Franklin's manuscript was eventually published in the same issue of Nature as Watson and Crick's. Her colleague at Kings College London, Maurice Wilkins, was invited by Watson and Crick to add his name to their paper.
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DNA discovery could have been earlier if not for 'mistaken decision' by Rosalind Franklin
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DNA, gay-therapy bills advance in Legislature
Posted: at 12:45 am
The state could take DNA samples from people convicted for certain disorderly persons offenses under a bill that a Senate committee approved on Thursday.
Other legislation that advanced Thursday included bills to outlaw gay conversion therapy for minors and to crack down on inmates receiving government benefits. Lawmakers also debated whether to prohibit employers from conducting background checks on job applicants before extending a conditional job offer.
Disorderly persons
Under a bill that the Senate Budget and Appropriations Committee approved unanimously, people convicted of shoplifting, prostitution, drug offenses or certain other disorderly persons crimes would have to submit to DNA sampling.
Currently, people convicted of first- through fourth-degree crimes must submit a DNA sample to the state, which adds it to a database and tries to match it with samples found at crime scenes.
By expanding the DNA database, we can greatly improve the ability of law enforcement agencies to positively identify the perpetrator and reduce the number of false convictions, said Sen. Paul Sarlo, D-Wood-Ridge, one of the bills sponsors.
The legislation heads to the full Senate next. An Assembly version has not yet come up in committee.
Conversion therapy
Legislation prohibiting gay-conversion therapy, which attempts to help people change their sexual orientation, was approved by an Assembly committee.
The bill would apply to licensed professionals, such as psychiatrists or social workers, and bar them from engaging in sexual-orientation change efforts with a person under 18 years old.
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DNA, gay-therapy bills advance in Legislature
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Leprosy DNA analysed from bones
Posted: at 12:45 am
DNA from the bones of medieval leprosy victims is helping scientists improve their understanding of the disease.
The samples, extracted from skeletons buried at the St Mary Magdalen Hill leprosy hospital in Winchester, Hampshire, were used to construct the entire genome, or genetic code, of the ancient leprosy bacterium.
A waxy coat surrounding the bug is believed to have protected it from degradation over the centuries.
The disfiguring disease was once endemic in Europe but largely disappeared during the Middle Ages.
Lead scientist Professor Graham Stewart, from the University of Surrey, said: "Understanding diseases from the past will help us predict emerging infectious diseases and potentially suggest how we may be better able to control existing diseases.
"We hope to analyse even older DNA, tracing leprosy and also tuberculosis back to their origins in human history."
The research, published in the journal Science, is part of an international project to reconstruct genome sequences of bacteria from five medieval skeletons excavated in Denmark, Sweden and the UK.
Scientists compared the ancient genomes with those from 11 modern strains of leprosy from around the world. They found that leprosy in the Americas had a European origin, and strains now found exclusively in the Middle East were once also present in Europe.
Bioarchaeologist Dr Mike Taylor, also from the University of Surrey, said: "The excavations at St Mary Magdalen, Winchester and other European sites bring us literally face to face with the effects the disease had on susceptible people, almost a millennium before the advent of antibiotics."
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Leprosy DNA analysed from bones
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Human DNA not patentable: US Supreme Court
Posted: at 12:45 am
The US Supreme Court has issued a potentially far-reaching ruling, stating that DNA in the human genome is a "product of nature" that cannot be patented.
The nine-member court's unanimous finding on Thursday overturns exclusive rights to use genes that have been issued in recent decades by the US Patent and Trademark Office, but does allow companies to patent their developments of synthetic, so-called composite DNA.
Justice Clarence Thomas, author of the decision, wrote: "A naturally occurring DNA segment is a product of nature and not patent-eligible merely because it has been isolated."
However, he went on to write that composite DNA "is patent-eligible because it is not naturally occurring."
The decision strikes down patents issued to Myriad Genetics Inc, which had isolated a rare gene associated with very high rates of breast and ovarian cancer in women who carry the mutation. The company had claimed the exclusive right to offer tests for the gene, based on its patent.
Hollywood star Angelina Jolie, whose mother died of ovarian cancer, announced last month that she had undergone a double mastectomy after the Myriad test showed that she carried the gene.
Her case illustrated how personal genomics are changing health care.
The US Patent Act authorises patents for the invention or discovery of "any new and useful ... composition of matter," but not "laws of nature, natural phenomena and abstract ideas."
Thomas wrote that patent protection "strikes a delicate balance" to create incentives for discovery without impeding the exchange of information that fuels invention.
Myriad found the location of the cancer-linked gene but "did not create or alter" the information or structure of those DNA segments, the court said.
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Human DNA not patentable: US Supreme Court
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US Supreme Court bans DNA patents
Posted: at 12:45 am
13 June 2013 Last updated at 12:34 ET
Human genes may not be patented, but artificially copied DNA can be claimed as intellectual property, the US Supreme Court has ruled unanimously.
The court quashed patents held by a Utah-based firm on two genes linked to breast and ovarian cancer.
The opinion said DNA came from nature and was not eligible for patenting.
The US biotechnology industry had warned any blanket ban on such patents would jeopardise huge investment in gene research and therapies.
"We hold that a naturally occurring DNA segment is a product of nature and not patent eligible merely because it has been isolated," Justice Clarence Thomas wrote in Thursday's opinion.
But his ruling said that synthetic molecules known as complementary DNA can be patented "because it is not naturally occurring".
Myriad Genetics, the company at the heart of the lawsuit, saw its shares rise after Thursday's compromise decision.
Jason Palmer Science reporter, BBC News
The key to Thursday's ruling is an interpretation of how much modification of a natural product makes it an invention. But what is at stake is the development of an industry that makes good use of our genetic material. Absolute dominion over the use of a snippet of genetic information might stifle competition, but leaving it as a gift of nature free of commerce could deter innovation.
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US Supreme Court bans DNA patents
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You can’t patent DNA, Supreme Court rules
Posted: at 12:45 am
NBC's Pete Williams shares details on the Supreme Court's unanimous decision that says human genes cannot be patented, but Synthetic DNA is patentable.
By Maggie Fox, Senior Writer, NBC News
Patients, researchers and industry all claimed victory Thursday when the Supreme Court ruled that human DNA cannot be patented, opening the door for dozens of scientists and others trying to market newer and better tests to tell people about their risks for a range of illnesses from cancer to heart disease.
But the unanimous ruling left in place protections for the biotechnology industry and methods used to make drugs based on engineered DNA.
The ruling clearly invalidated Myriad Genetics' most controversial patents on tests for mutations in the BRCA1 and BRCA2 genes that raise the risk of breast, ovarian and other cancers. But it did not go so far as to remove patents on artificial DNA, which is not widely used in genetic testing, but is used in other biotechnology applications.
We just are so glad that women and our genes are not being held hostage by a private corporation any more, said Lisbeth Ceriani, a Massachusetts breast cancer survivor who is one of the plaintiffs in the suit.
The researchers whose lawsuit prompted the decision were also celebrating. They say it will make genetic tests cheaper and far more widely available in the future.
I think it changes everything, Dr. Harry Ostrer, a genetics expert at Albert Einstein College of Medicine in New York and one of the main plaintiffs in the case, told NBC News.
I think this is a green light for us to go ahead with our testing.
Patients will benefit, said Dr. Ossama Tawfik an expert in breast cancer pathology at the University of Kansas Medical Center and a member of the American Society for Clinical Pathology. I know the costs of these tests will be considerably lower without patent protection, allowing more women at risk to be tested, Tawfik said in a statement.
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DNA ruling will make gene tests cheaper, experts say
Posted: at 12:45 am
NBC's Pete Williams shares details on the Supreme Court's unanimous decision that says human genes cannot be patented, but Synthetic DNA is patentable.
By Maggie Fox, Senior Writer, NBC News
Patients, researchers and industry all claimed victory Thursday when the Supreme Court ruled that human DNA cannot be patented, opening the door for dozens of scientists and others trying to market newer and better tests to tell people about their risks for a range of illnesses from cancer to heart disease.
But the unanimous ruling left in place protections for the biotechnology industry and methods used to make drugs based on engineered DNA.
The ruling clearly invalidated Myriad Genetics' most controversial patents on tests for mutations in the BRCA1 and BRCA2 genes that raise the risk of breast, ovarian and other cancers. But it did not go so far as to remove patents on artificial DNA, which is not widely used in genetic testing, but is used in other biotechnology applications.
We just are so glad that women and our genes are not being held hostage by a private corporation any more, said Lisbeth Ceriani, a Massachusetts breast cancer survivor who is one of the plaintiffs in the suit.
The researchers whose lawsuit prompted the decision were also celebrating. They say it will make genetic tests cheaper and far more widely available in the future.
I think it changes everything, Dr. Harry Ostrer, a genetics expert at Albert Einstein College of Medicine in New York and one of the main plaintiffs in the case, told NBC News.
I think this is a green light for us to go ahead with our testing.
Patients will benefit, said Dr. Ossama Tawfik an expert in breast cancer pathology at the University of Kansas Medical Center and a member of the American Society for Clinical Pathology. I know the costs of these tests will be considerably lower without patent protection, allowing more women at risk to be tested, Tawfik said in a statement.
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DNA ruling will make gene tests cheaper, experts say
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Genome of global deep ocean being sequenced
Posted: at 12:45 am
Washington, June 13 (ANI): A team of Spanish researchers, coordinated by the Spanish National Research Council (CSIC), has begun sequencing the genome of the global deep ocean.
They are using more than 2,000 samples of microorganisms collected in the Atlantic, Indian and Pacific Oceans during the Malaspina Expedition. This collection of marine microbial genomic, the first in the world on a global scale, will provide new clues about a reservoir of biodiversity yet to explore, considering that it could imply the discovery of tens of millions of new genes in the coming years.
The works of sequencing (framed in the Malaspinomics project) focus on the viruses, bacteria and protists that inhabit the ocean to 4,000 meters deep.
Most of the biomass of marine organisms is composed of microorganism. Of these, a 72 percent inhabit the dark ocean, from 200 meters deep. However, so far, the DNA or RNA sequencing had been almost exclusively limited to the ocean surface waters.
Malaspinomics preliminary results reveal a wealth of unknown species of microorganisms in the deep ocean, characterized by an intense biological activity. Specifically, 60 percent of the bacterial species of the deep ocean detected by massive sequencing techniques are unknown.
Carlos Duarte, CSIC researcher and coordinator of Malaspina Expedition, asserted: "Malaspinomics means a leap forward because, for the first time, we are analyzing samples from the deep ocean, covering the great oceans. The new protocols of sequencing and analysis allow us to extract quite more information than in previous studies, which were limited to specific regions or surface waters, to an unprecedented level of resolution".
Researchers have already detected some bacteria, which are capable of degrading highly toxic compounds that have gradually gathered in the seabed.
Analysis are being conducted by a team that includes researchers from the Institute of Marine Sciences (CSIC), the Mediterranean Institute for Advanced Studies -joint centre of CSIC and the University of the Balearic Islands (UIB)- and the National Genome Analysis Centre of Barcelona (CNAG).
They also count on the collaboration of MareNostrum -National Supercomputing Centre (BSC) in Barcelona-, the Joint Genome Institute (USA) and the European Molecular Biology Laboratory (Germany). (ANI)
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Genome of global deep ocean being sequenced
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Bizarre Ehux Algae Adapts To Environment With Variable Genome
Posted: at 12:45 am
June 13, 2013
Image Caption: Emiliania huxleyi's shapes are as varied as the ocean environments it lives in. Credit: Nature
redOrbit Staff & Wire Reports Your Universe Online
An international team of researchers has sequenced the genome of Emiliania huxleyi, a species of single-celled photosynthetic marine algae that they say is responsible for removing carbon dioxide from the air, supplying the oxygen we breath, and even forming the basis of marine food chains.
The results of their work has just been published in the journal Nature and helps explain the tremendous adaptive potential and global distribution of this algae, which is smaller than a speck of dust and contains a shield of thin calcified platelets resembling the outside of a soccer ball.
A team of 75 researchers from a dozen different countries spent seven years mapping the genome, and found a set of core genes that have mixed with a separate set of variable genes. The authors reported that genetic diversity allows E. huxleyi (Ehux for short) to adapt to different environments, as part of its gene pool is dependent upon its geographic location and living conditions. It is the first algae in which scientists have detected this unique characteristic.
The Ehux genome is incredibly variable, said study co-author Dr. Uwe John and biologist with the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI). For example, if the genetic information of two humans is compared, an agreement of about 99 per cent is found. However, if, for example, we take two Ehux strains from different ocean regions, we find a degree of similarity of only 70 or 80 per cent. The rest of the genome differs.
This means that all of the algae possess a certain basic set of genes, the core genome, which is supplemented by different genes, i.e. is interchangeable to a certain extent, depending on the habitat of the algae, he continued. In the scientific world, we call this phenomenon pan-genome, which was only known from bacteria until we conducted our study. We have now demonstrated the pan-genome in a calcified alga for the first time.
Dr. John and colleagues from the Department of Energy Joint Genome Institute (DOE JGI) sequenced the Ehux genome and compared it with the genetic information from other algal isolates, reporting their results in the June 12 edition of Nature. The strain sequenced by the researchers was isolated from the South Pacific and is the first reference genome for coccolithophores.
The project wound up taking the scientists longer to complete than originally predicted because of the complexity and size of the Ehux genome. They originally believed that it was an estimated 30 million bases, but the genome wound up being more than four times that size approximately 141 million bases. Sequencing efforts of Ehux, which is part of the third most abundant group of phytoplankton, was first proposed by researchers back in 2002.
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Bizarre Ehux Algae Adapts To Environment With Variable Genome
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