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Monthly Archives: January 2013
STI Genome Exhaust (drive past) – Video
Posted: January 9, 2013 at 10:49 pm
STI Genome Exhaust (drive past)
Stock exhaust with STI Genome rear silencer
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STI Genome Exhaust (drive off) – Video
Posted: at 10:49 pm
STI Genome Exhaust (drive off)
Stock exhaust with STI Genome rear silencer
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Genome scientists launch Microbiome journal
Posted: at 10:48 pm
Public release date: 9-Jan-2013 [ | E-mail | Share ]
Contact: Laura Crozier crozier@dbi.udel.edu 302-831-3424 University of Delaware
Two prominent microbiologists have launched a new peer-reviewed publication focusing on microbiome research in environmental, agricultural, and biomedical areas. Eric Wommack, from the University of Delaware's College of Earth, Ocean and Environment and Jacques Ravel, from the University of Maryland School of Medicine's Institute for Genome Sciences are the Editors-in-Chief of Microbiome, a BioMed Central (BMC) publication, which launched its first issue this week.
The new publication reflects the growing importance of the need for studying communities of microorganisms microbiomes and their functions in their natural environment whether that environment is the human body, the ocean, or any other habitat.
"Microbiology was once thought of as two exclusive subdisciplines clinical microbiology and environmental microbiology but the substantial technological advances, particularly over the past decade in DNA sequencing and analysis, have given scientists new common and interdisciplinary research interests," explains Ravel, who is studying the effect of the human microbiome on women's health, and is part of the NIH-funded Human Microbiome Project (HMP).
"Microbiome will facilitate the cross-fertilization of ideas, research methods and analyses, and theory between clinical and environmental microbiologists exploring the emergent impacts of microbial communities on the ecosystems they inhabit," says Wommack, a University of Delaware professor who researches the inner workings of microbial communities.
The central purpose of Microbiome is to unite investigators conducting research on microbial communities in environmental, agricultural, and biomedical arenas. Topics broadly addressing the study of microbial communities, such as, meta-genomics surveys, bioinformatics, other '-omics' approaches and surveys, and community/host interaction mathematical modeling will be covered.
The new issue of Microbiome features several innovative research papers from scientists at various institutions worldwide. For example, a team from the University of Guelph in Canada, summarized their novel stool substitute transplant therapy research. The team treated two patients with Clostridium difficile using a bacterial strain cocktail in an attempt to alleviate this difficult infection of the lower GI tract. Other innovative genomic research approaches are also featured in the first issue.
The journal includes a new section, "Microbiome Announcements," that will contain short reports describing microbiome datasets and their associated clinical or environmental data.
Jacques Ravel, is a professor of microbiology and immunology and associate director for genomics at the Institute for Genome Sciences (IGS) at the University of Maryland School of Medicine. IGS scientists have pioneered studies in microbiome research and are continuing to be at the forefront of the human microbiome project. Eric Wommack, is a professor of environmental microbiology in the Departments of Plant and Soil Sciences, Biological Sciences, and the College of Earth, Ocean, and Environment at the University of Delaware.
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Genome Reveals Comb Jellies' Ancient Origin
Posted: at 10:48 pm
New sequencing data challenges prior thinking that sponges were the most ancient animals in evolutionary history
By Amy Maxmen and Nature magazine
The ancestors of comb jellies such as Mnemiopsis leidyi may be the earliest creatures in the animal kingdom. Image: William Browne/Univ. of Miami
Animals evolved gradually, from the lowly sponge to the menagerie of tentacled, winged and brainy creatures that inhabit Earth today. This idea makes such intuitive sense that biologists are now stunned by genome-sequencing data suggesting that the sponges were preceded by complex marine predators called comb jellies.
Although they are gelatinous like jellyfish, comb jellies form their own phylum, known as ctenophores. Trees of life typically root the comb jellies' lineage between the group containing jellyfish and sea anemones and the one containing animals with heads and rears which include slugs, flies and humans. Comb jellies paddle through the sea with iridescent cilia and snare prey with sticky tentacles. They are much more complex than sponges they have nerves, muscles, tissue layers and light sensors, all of which the sponges lack.
Its just wild to imagine that comb jellies evolved before sponges, says Billie Swalla, a developmental biologist at the University of Washington in Seattle and a leading member of the team sequencing the genome of the comb jelly Pleurobrachia bachei. But the team is suggesting just that, in results they presented at the annual meeting of the Society for Integrative and Comparative Biology, held on 37 January in San Francisco, California.
Despite comb jellies' complexity, DNA sequences in the Pleurobrachia genome place them at the base of the animal tree of life, announced Swalla's colleague Leonid Moroz, a neurobiologist at the University of Florida in Gainesville. Another team presented results from genome sequencing for the comb jelly Mnemiopsis leidyi, and found that the phylum lands either below, or as close to the base as, sponges on the tree.
Weve always thought that predatorprey interactions and sensory adaptations evolved long after the origin of sponges, Swalla says. Now we need to imagine early life as a sponge, ctenophore and everything in between. Because millions of species have gone extinct since animals appeared some 542 million years ago, Swalla says, the ancestor of all animals might look different from modern comb jellies and sponges.
Gene families, cell-signaling networks and patterns of gene expression in comb jellies support ancient origins as well. For example, Moroz and his team found that comb jellies grow their nerves with unique sets of genes. These are aliens, Moroz jokes. He suggests that comb jellies might be descendants of Ediacaran organisms, mysterious organisms that appear in the fossil record before animals. Indeed, in 2011, paleontologists claimed that one of these 580-million-year-old fossils resembled comb jellies.
Andy Baxevanis, a comparative biologist at the US National Human Genome Research Institute in Bethesda, Maryland, and a leader on the Mnemiopsis genome project, says that comb jellies are the only animals that lack certain genes crucial to producing microRNA short RNA chains that help to regulate gene expression. Moreover, he points out, sponges and comb jellies lack other gene families that all other animals possess.
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Natasha Psoriasis Video – Video
Posted: at 10:48 pm
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State Media Blames Foreign Forces over Southern Weekly Censorship Row – Video
Posted: at 10:47 pm
State Media Blames Foreign Forces over Southern Weekly Censorship Row
After Southern Weekly exposed the meddling of Guangdong #39;s propaganda chief in their newspaper, Chinese citizens began to protest. In a rare display of tolerance, the Chinese regime let the protests happen. Now however, it appears they are starting to clamp down. According to China Digital Times, a website operated by students at the University of California, China #39;s Central Propaganda Department issued this notice to media outlets around the country on Monday. After asserting that the Communist Party must control the media, the directive blames, quote, "external hostile forces", for the escalating situation. The directive then orders media outlets to repost this editorial by state-run Global Times. opinion.huanqiu.com The article claims free media cannot exist under China #39;s current political climate. And again points to overseas forces for fanning the protest. The piece has been derided online. Some news portals did repost it mdash;but with a clear disclaimer that the views are not their own. news.qq.com Outside the headquarters of the Southern Media Group on Tuesday, supporters have continued to gather for a second day. This man in a wheelchair holds a sign that reads: "Support Southern Weekly. No More news censorship. Give me back my freedom of speech." [NUMBER 7 ON REUTER #39;S SHOTLIST] A minor scuffle broke out between these demonstrators, and this smaller group. They #39;re here to support the Communist Party and quote "the crackdown of traitor media." Officially, Chinese leaders ...
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China Journalists On Strike Over Censorship – Video
Posted: at 10:47 pm
China Journalists On Strike Over Censorship
01/07/2013 A quite unprecedented event has hit the Chinese southern city of Guangzhou: Hundreds of people gathered outside the office of a liberal newspaper after a leading New Year article calling for more press freedom was deleted from the daily #39;s website. "We want press freedom, constitutionalism and democracy," read one of the banners at the protests outside the headquarters of Southern Weekly. Monday demonstration in the capital of Guangdong province was mostly reported via social networks. More: leaksource.wordpress.com twitter.com
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A Chinese Censorship Scandal Is Spiraling Out Of Control
Posted: at 10:47 pm
Southern Weekly has long been the most daring of Chinese publications, perhaps enjoying a lower level of scrutiny from Beijing due to its base in the city of Guangzhou, just north of Hong Kong.
The paper now finds itself, however, at the center of a battle over censorship in the country that is spinning wildly out of control. As The Atlantic's James Fallows notes, it could be a very important issue for China in 2013 or it could go nowhere, we don't really know yet.
The situation began over the New Year, when the newspaper staff prepared to publish an article titled "Chinas Dream, the Dream of Constitutionalism". The article, part of a yearly tradition, would this year openly call for reform in the country.
Between the editing and the publication, the core of the article was changed: the new title would be "We are closer than ever before to our dreams" and the article would have a very pro-government stance.
Staff at the newspaper were furious feeling that local propaganda boss Tuo Zhen had overstepped even China's strong censorship laws by editing the article after it was sent out to publication. Editors took to Weibo, China's popular microblogging service, to denounce the new article. An open letter was published on the service, accusing the censors of "raping" the newspaper's editorial judgement.
"We demand an investigation into the incident, which has seen proper editorial procedure severely violated and a major factual error printed," the open letter said, according to Hong Kong-based South China Morning Post (the letter has since been deleted from Weibo).
Two subsequent open letters were posted online, the second of which was signed and openly called for strikes.
By January 7th, the newspaper's staff were in the street protesting something unheard of at a major newspaper for over two decades, SCMP reports. Protests spread amongst universities in Guangzhou and Nanjing. Perhaps the best indication of the issue's spread is the fact that Weibo's most popular user, actress Yao Chen, posted a message in support of the strikes to her 31 million followers. "One word of truth outweighs the whole world," she said, quoting Soviet-era Russian dissident Aleksandr Solzhenitsyn.
Yao's words show how far a relatively wonky debate over censorship had gone in China.
"When a Chinese ingnue, beloved for her comedy, doe-eyed looks, and middle-class charm, istweetingher fans the words of Alexander Solzhenitsyn, we may be seeing a new relationship between technology, politics, and Chinese prosperity," Evan Osnos of the New Yorker observed this week.
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Management, reporters defuse China censorship row
Posted: at 10:47 pm
GUANGZHOU, China (AP) Communist Party-backed management and rebellious editors at an influential weekly newspaper have defused a high-profile standoff over censorship that turned into a test of the new Chinese leadership's tolerance for political reform.
Under an agreement reached Tuesday, editors and reporters at the Southern Weekly will not be punished for protesting and stopping work in anger over a propaganda official's heavy-handed rewriting of a New Year's editorial last week, according to two members of the editorial staff. One, an editor, said propaganda officials will no longer directly censor content prior to publication.
The staff members asked not to be identified because they feared retaliation after they and other employees were told not to speak to foreign media. Executives at the newspaper and its parent company, the state-owned Nanfang Media Group, declined comment other than to say the Southern Weekly would publish as normal Thursday.
Aside from getting the presses rolling, the agreement appears likely to deflate the confrontation that presented a knotty challenge to Chinese leader Xi Jinping two months after taking office. While the crisis began over the propaganda official's rewriting of the editorial calling for better constitutional governance to include praise for the party, it soon evolved into calls for free expression and political reform.
Expressions of support for the newspaper poured across the Internet and, for two days this week, protesters came by the hundreds to the gates of the compound housing the Southern Weekly. On Tuesday, supporters of the newspaper squared off against flag-waving Communist Party loyalists near the compound off a busy street in Guangzhou, one of China's richest and most commercially vibrant cities.
Some 30 uniformed police officers stood guard outside the compound, as a handful of protesters showed up for a third day Wednesday, renewing calls for press freedom.
Defusing the crisis took the intervention of Hu Chunhua, the newly installed party chief of Guangdong, the province where Guangzhou is located, according to an editorial staff member and an academic in Beijing, who asked not to be named because officials at his university ordered him not to speak with the media.
The agreement to keep propaganda officials from censoring articles before they appear rolls back more intrusive controls put in place in recent months, but does not mean an end to censorship. The Propaganda Department, which controls all media in China, relies on directives, self-censorship by editors and reporters and firings of those who do not comply to enforce the party line.
The Southern Weekly editor said it was hard to call the agreement a victory because controls still remain in place and punishments, though forestalled for now, may be imposed later.
Management refused to yield to one demand: that this week's editions include an explanation of the dispute, the editor and a colleague said.
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Tentative deal reached in censorship flap
Posted: at 10:47 pm
Published: Jan. 9, 2013 at 9:44 AM
GUANGZHOU, China, Jan. 9 (UPI) -- A deal in a censorship dispute was reached between leaders of China's Communist Party and the staff at a popular publication, officials said Wednesday.
One journalist working for the Guangzhou publication at the center of the dispute, said reporters were told the newspaper would publish as usual Thursday, The New York Times reported.
Journalists at Southern Weekend, one of China's most audacious and popular publications, threatened to strike over a New Year's editorial on political reform that was censored and rewritten by a local propaganda official.
While the exact terms of the compromise weren't released, indications were that journalists agreed not to publicly voice their grievances about Tuo Zhen, the propaganda chief for Guangdong province, whom they accused of censorship, the Los Angeles Times reported.
"The paper is coming out tomorrow, and the propaganda department is going to hold a meeting with staff about this tomorrow," a journalist told the Times.
Other reporters said details of the agreement remained were sketchy and that it may collapse.
The Los Angeles Times said the editor of the Beijing News reportedly resigned Wednesday after refusing to run an editorial condemning the protest at Southern Weekly and editors at other news organizations may be removed from their posts because of the issue.
Protesters gathered again Wednesday outside of the newspaper's headquarters in Guangzhou.
As celebrities and business leaders supported press freedoms online, senior propaganda officials in Beijing this week began rolling out a national strategy to rake rebel journalists and their supporters over the coals, The New York Times said. The Central Propaganda Department issued a directive to news organizations saying defiance at Southern Weekend involved "hostile foreign forces."
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