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Daily Archives: October 12, 2012
DNA Discrepancy: Bad News For Jurassic Genetics
Posted: October 12, 2012 at 1:24 am
Michael Harper for redOrbit.com Your Universe Online
Despite its status as a best selling novel and blockbuster hit, it turns out Jurassic Park was based on a fundamentally flawed premisebad news for dinoDNA researchers.
After drilling through some old bird bones, palaeogeneticists in Copenhagen and Australia have discovered DNA can hardly survive 1,000 years, let alone make it through the millions of years that separate us from our reptilian overlords.
Led by Morten Allentoft at the University of Copenhagen and Michael Bunce at Murdoch University in Perth, Australia, a group of palaeogeneticists studied many bones from a Moa bird fossil to understand just how feasible it is to clone a Raptor these days.
Weve been permanently plagued by this Jurassic Park myth thats been kicking around since the early nineties, Bunce told the Sydney Morning Herald, reports the Telegraph. The myth is still out there. Even other scientists ask whether it is possible.
Each of the 158 Moa bones were gathered relatively close to one another in New Zealand, (about 3 miles or so apart) were preserved in near identical environments, and are estimated by the team to be anywhere between 600 and 8,000 years old.
After drilling into the core of these bones and examining them, the researchers estimated that DNA actually has a half-life of about 521 years. This means that after an estimated span of 521 years, half of the nucleotides in the samples backbone break. In another 521 years, half of the remaining nucleotides also break, and so on.
Even though half of the nucleotides are destroyed after just 521 years, the research team suggests that, under the best conditions, every strand in that DNA would be destroyed after, at most, 6.8 million years. Further crushing Crichton fans, these researchers also suggest that while this DNA could technically exist for upwards of 6 million years, it becomes mostly useless after only 1.5 million years. After the first millennia (1,000 years), the strands of DNA become far too short to read.
There are many variables to be considered, of course. As soon as a creature, say, a terrifying pterodactyl, passes on, everything in its body begins to die and decay. As cells die, enzymes begin to eat away at the nucleotide backbone of DNA as other micro-organisms speed the process along. Once only bone is left, groundwater becomes the worst enemy of any existing DNA, and though it can be a stubborn contender, DNA, just like the walls of the Grand Canyon, will eventually lose its fight with water. The speed at which groundwater destroys this DNA depends on variables such as temperatures, microbial attacks and oxygen, according to the team of palaeogeneticists.
Therefore, even under the best conditions, Dino DNA simply hasnt been able to stand the test of time.
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DNA Discrepancy: Bad News For Jurassic Genetics
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US panel urges end to secret DNA testing over privacy concerns
Posted: at 1:24 am
They're called discreet DNA samples, and the Elk Grove, California, genetic-testing company easyDNA says it can handle many kinds, from toothpicks to tampons.
Blood stains from bandages and tampons? Ship them in a paper envelope for paternity, ancestry or health testing. EasyDNA also welcomes cigarette butts (two to four), dental floss ("do not touch the floss with your fingers"), razor clippings, gum, toothpicks, licked stamps and used tissues if the more standard cheek swab or tube of saliva isn't obtainable.
If the availability of such services seems like an invitation to mischief or worse - imagine a discarded tissue from a prospective employee being tested to determine whether she's at risk for an expensive disease, for instance - the Presidential Commission for the Study of Bioethical Issues agrees.
On Thursday it released a report on privacy concerns triggered by the advent of whole genome sequencing, determining someone's complete DNA make-up. Although sequencing "holds enormous promise for human health and medicine," commission chairwoman Amy Gutmann told reporters on Wednesday, there is a "potential for misuse of this very personal data."
"In many states someone can pick up your discarded coffee cup and send it for (DNA) testing," said Gutmann, who is the president of the University of Pennsylvania.
"It's not a fantasy to think about how, without baseline privacy protection, people could use this in a way that would be really detrimental," such as by denying someone with a gene that raises their risk of Alzheimer's disease long-term care insurance, or to jack up life insurance premiums for someone with an elevated genetic risk of a deadly cancer that strikes people in middle age.
"Those who are willing to share some of the most intimate information about themselves for the sake of medical progress should be assured appropriate confidentiality, for example, about any discovered genetic variations that link to increased likelihood of certain diseases, such as Alzheimer's, diabetes, heart disease and schizophrenia," Gutmann said.
The commission took on the issue because whole genome sequencing is poised to become part of mainstream medical care, especially by personalizing medical treatments based on a patient's DNA.
$1,000 genome
That has been driven in large part by dramatic cost reductions, from $2.5 billion per genome in the Human Genome Project of the 1990s and early 2000s to $1,000 soon. Several companies, including Illumina Inc. and Life Technology's Ion Torrent division, sell machines that can sequence a genome for a few hundred dollars, but that does not include the analysis to figure out what the string of 3 billion DNA "letters" means.
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US panel urges end to secret DNA testing over privacy concerns
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US panel calls for stronger privacy for genome data
Posted: at 1:23 am
Laws to keep genetic information private are not strong enough -- a situation that could hinder progress in important research, according to a new high-level study Thursday on medical ethics.
As human genome sequencing becomes more and more affordable, researchers are finding new and important ways to use the data for research and at the clinical level.
This has the potential to lead to even more major advances in medicine and science, the Presidential Commission for the Study of Bioethical Issues said in its report.
But these advances depend on having available vast amounts of genetic information, coming from tens of thousands, or even millions of people, most of whom would not benefit directly from the research, emphasized commission chair Amy Gutmann.
And therein lies the potential for ethical dilemmas, the authors wrote, making a dozen recommendations on reinforcing regulations to protect the confidentiality of an individual's genetic information.
"Those who are willing to share some of the most intimate information about themselves for the sake of medical progress should be assured appropriate confidentiality," Gutmann said.
"The commission's goal was to find the most feasible ways of reconciling the enormous medical potential of whole genome sequencing with the pressing privacy and data access issues raised by the rapid emergence of low-cost whole genome sequencing," she added.
For instance, a person's genome may reveal a predisposition for diseases like Alzheimer's, diabetes, schizophrenia or heart problems. That information could be used in a negative way by employers or health insurance companies.
Without assurances that would not happen, many people may feel wary of volunteering for genome sequencing, the authors wrote.
And while genomic data are kept confidential in some situations, in others the rules are less clear.
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US panel calls for stronger privacy for genome data
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Inconsistent Genome Privacy Laws Need Toughening, Panel Says
Posted: at 1:23 am
Many U.S. states lack laws to protect people from harmful use of their whole DNA transcripts, or genomes, and should work with the federal government to provide consistent protection, presidential advisers said.
About half of states dont have legislation that would prevent someone from secretly analyzing another persons genome with the saliva from a used coffee cup, said Amy Gutmann, who led the Presidential Commission for the Study of Bioethical Issues panel that released a report today.
Variations in the human genome can spell the difference between health and disease for individuals, and the cost of a complete analysis has dropped from more than $1 million to about $4,500 in less than eight years. As genome sequencing becomes cheaper and more routine, the stakes are rising to keep vital information about a persons health private, Gutman said.
To make full use of whole genome sequencing, which holds out enormous promise for human health and medicine, were going to have to figure out how to protect peoples privacy and avoid the harm that come from misuse of this data, said Gutmann, who is also president of the Philadelphia-based University of Pennsylvania, in a telephone conference with reporters.
Existing federal laws, such as the Health Insurance Portability and Accountability Act, the Genetic Information Nondiscrimination Act, and the Common Rule that protects research subjects, offer some protections against unauthorized use of medical data, the panel said. Rewriting those rules might ensure that patients have some needed protections, said Anita Allen, a University of Pennsylvania law professor and a member of the commission.
Such a reform might be a very useful thing to do, and is likely to be taken up by Congress, Allen said.
As cost of sequencing falls, doctors may begin using whole genomes to assess patients risk of cancer, diabetes, heart disease, or other conditions, the report said. Scientists are clamoring for more genomes to add to data sets that can help clarify the impact of variations in the genome, it said.
Illumina Inc. (ILMN), based in San Diego, and Life Technologies Corp. (LIFE), based in Carlsbad, California, are the two biggest makers of DNA sequencers.
Many hospitals and medical centers are asking patients whether some of their genetic data, if not their whole genomes, can be used for such research, the report said.
Those who are willing to share some of the most intimate information about themselves for the sake of medical progress should be assured appropriate confidentiality, Gutmann said in a statement released by the commission.
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Inconsistent Genome Privacy Laws Need Toughening, Panel Says
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Was she really 132? World's 'oldest ever person' dies in remote Georgian village
Posted: at 1:23 am
A GEORGIAN woman who claimed to be 132 years old - making her the worlds oldest human being ever - has died.
Antisa Khvichava claimed to have been born on 8 July 1880, and had a Soviet-era passport and documentation to that effect, but her age was contested and never officially proven.
She lived in the remote village of Sachino, in north-west Georgia, with her 42-year-old grandson and claimed to have retired from her job as a tea and corn picker in 1965 when she was 85.
Mrs Khvichava claimed to be just 10 years younger than Russias first communist leader Vladimir Lenin, and to have been born a year before the death of the celebrated Russian writer Fyodor Dostoyevsky.
She said she had 12 grandchildren, 18 great-grandchildren and four great-great-grandchildren, and reportedly attributed her longevity and good health to drinking a small amount of local brandy every day.
Mrs Khvichava, who only spoke in the local language Mingrelian, would already have been 31 when the Titanic sunk in April 1912 and 37 during Russias October Revolution in 1917. She would have been 61 when the Soviet Union entered the Second World War in 1941 and 111 when the Soviet Union formally came to an end in 1991.
Her original birth certificate is said to have been lost during the years of revolutions and civil wars that ravaged Georgia following the fall of the USSR. But local officials, friends, neighbours and descendants have all back up the claim that she was 132 when she died.
Experts have some doubt over the claims however, as all the documents stating her age were created long after Mrs Khvichava's birth. Without documents dating from the 1880s, researchers said her real age is likely to remain a mystery.
The oldest living person at the moment is 116-year-old Besse Cooper from the state of Georgia in the USA. Her birth can be officially proven to have been in August 1896.
The oldest ever verified person was French woman Jeanne Calment, born in February 1875, who lived to 122 years and 164 days before dying in August 1997. She claimed to have met the artist Vincent Van Gogh when she was a young woman.
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Was she really 132? World's 'oldest ever person' dies in remote Georgian village
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Stopping the itch: New clues into how to treat eczema
Posted: at 1:23 am
ScienceDaily (Oct. 11, 2012) More than 15% of children suffer with eczema, or atopic dermatitis, an inflammatory skin disease that in some cases can be debilitating and disfiguring. Researchers reporting in the October issue of Immunity have discovered a potential new target for the condition, demonstrating that by blocking it, they can lessen the disease in mice.
In eczema, immune T cells invade the skin and secrete factors that drive an allergic response, making the skin itch. Dr. Raif Geha, of Boston Children's Hospital, and his collaborators now show that scratching the skin precipitates the condition by encouraging an influx of other immune cells called neutrophils. These neutrophils secrete a lipid called leukotriene B4 that calls in more neutrophils, and more importantly, potent immune T cells that are the hallmark of eczema. These cells cause inflammation that aggravates the skin further. The investigators suspected that blocking the onslaught of these cells might slow down the disease or even stop it in its tracks.
Furthermore, Dr. Geha and his colleagues wondered whether the production of leukotriene B4 served to recruit T cells to the site of mechanical insult. And indeed that was the case. "We showed that a drug that blocks the production of leukotriene B4 blocks the development of allergic skin inflammation in a mouse model of eczema," says Dr. Geha. His team also found that deleting the receptors on immune cells that bind to leukotriene B4 had a similar effect.
"Our findings suggest that neutrophils play a key role in allergic skin inflammation and that blockade of leukotriene B4 and its receptor might provide a new therapy for eczema," says first author Dr. Michiko Oyoshi.
Most people get eczema as infants, and they tend to outgrow it by adolescence; however some people continue to experience "flare-ups" of an itchy rash on and off throughout life. Some develop these after coming into contact with particular substances, such as specific soaps, or in response to certain conditions, such as a respiratory infection or cold.
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The above story is reprinted from materials provided by Cell Press, via EurekAlert!, a service of AAAS.
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Stopping the itch: New clues into how to treat eczema
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Research and Markets: Atopic Dermatitis (Eczema) – Pipeline Review, H2 2012
Posted: at 1:23 am
DUBLIN--(BUSINESS WIRE)--
Research and Markets (http://www.researchandmarkets.com/research/329shk/atopic_dermatitis) has announced the addition of Global Markets Direct's new report "Atopic Dermatitis (Eczema) - Pipeline Review, H2 2012" to their offering.
Global Markets Direct's, 'Atopic Dermatitis (Eczema) - Pipeline Review, H2 2012', provides an overview of the Atopic Dermatitis (Eczema) therapeutic pipeline. This report provides information on the therapeutic development for Atopic Dermatitis (Eczema), complete with latest updates, and special features on late-stage and discontinued projects. It also reviews key players involved in the therapeutic development for Atopic Dermatitis (Eczema).
'Atopic Dermatitis (Eczema) - Pipeline Review, H2 2012' is built using data and information sourced from Global Markets Direct's proprietary databases, Company/University websites, SEC filings, investor presentations and featured press releases from company/university sites and industry-specific third party sources, put together by Global Markets Direct's team.
Scope:
- A snapshot of the global therapeutic scenario for Atopic Dermatitis (Eczema).
- A review of the Atopic Dermatitis (Eczema) products under development by companies and universities/research institutes based on information derived from company and industry-specific sources.
- Coverage of products based on various stages of development ranging from discovery till registration stages.
- A feature on pipeline projects on the basis of monotherapy and combined therapeutics.
- Coverage of the Atopic Dermatitis (Eczema) pipeline on the basis of route of administration and molecule type.
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Research and Markets: Atopic Dermatitis (Eczema) - Pipeline Review, H2 2012
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Internet censorship: Let it rot in walled gardens
Posted: at 1:22 am
October 11, 2012, 5:30 AM PDT
Takeaway: Attempts to shut us up in walled gardens and curb our online freedoms are impossible to implement and police. The nature of the internet sees to it that they are doomed to fail.
The quandary for governments is that because the web is ubiquitous and transparent it is hard to police and harder to censor. Photo: Shutterstock
John Gilmore, an internet activist who was also one of the co-founders of both the Electronic Frontier Foundation and the first free software company, Cygnus Solutions, once wrote that the net interprets censorship as damage and routes around it.
The internet was designed to enable military communications to find their way around points of failure in the event of a nuclear war. If one node fails or drops certain messages because it doesnt like their subject the messages find their way past that node anyway by some other route, according to Gilmore.
Censorship is practised for all kinds of political, social and commercial reasons, and all societies have limits on acceptable behaviour, but the point of the web is that there are no walled gardens and no limits to what we can access. If information wants to get out there, it will.
The idea that the internet is a universal resource that should be accessible to all is enshrined in the Declaration of Principles of the UN-sponsored World Summit on the Information Society (WSIS) of December 2003, which says, Everyone has the right to freedom of opinion and expression; that this right includes freedom to hold opinions without interference and to seek, receive and impart information and ideas through any media and regardless of frontiers.
Such declarations were relatively meaningless before the emergence of the world wide web, which has transformed the possibilities for information exchange and the dissemination of ideas, and how we respond to them.
Beyond the possibilities of static media, the internet can be seen as a democratising force. It has allowed us to interact with our peers across the cultural, racial, political and religious boundaries of the physical world, precisely because there are few barriers to what we say and how we say it, other than the approval or approbation of our peers.
What makes the internet different is that, unlike newspapers or television, it is interactive. We can determine what we read and how we read it. We are the editors and the filters. We can speak and share our vision with our fellow citizens on the opposite side of the globe without the interference of spokesmen or intermediaries.
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Internet censorship: Let it rot in walled gardens
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Paul's Texas district becomes Election Day fight
Posted: at 1:22 am
In Ron Paul's congressional district of 15 years, Democrats such as art gallery owner Elisabeth Lanier feel this could finally be their year to take the seat _ and not because of the political climate or how district lines were redrawn.
It's because "Dr. No" is no longer on the ballot.
"I'm sure he's a nice man and so forth," said Lanier, whose Galveston storefront was swamped with seven feet of water during Hurricane Ike in 2008, when Paul absorbed criticism for not doing more for his storm-battered constituents. "But he did virtually nothing and feels that government should do nothing."
Vying to succeed Paul are Republican state Rep. Randy Weber, who has Paul's endorsement, and former Democratic Congressman Nick Lampson, who replaced disgraced House Majority Leader Tom DeLay in his last stint in the U.S. House. It's one of only two competitive congressional races in Texas, though Weber has an edge in the coastal district that leans Republican.
Paul seldom had to worry about losing. He won re-election with at least 60 percent of the vote in his last six tries, including twice when Democrats didn't even bother putting a candidate on the ballot. He announced his retirement from Congress last year before announcing what became his latest failed presidential bid.
So much of a juggernaut was Paul _ and his national legion of supporters who kept his campaign pocketbook flush _ that local Democrats groused about the national party never putting money behind a challenger. Patricia Gray, a former state Democratic lawmaker from Galveston, has recalled party brass telling her that Paul couldn't be beat.
In the 14th Congressional District, Paul was a fixture on the biking trails in his hometown of Lake Jackson, sent cookbooks to his constituents and would sometimes answer the phone in his office. But apart from endorsing Weber, he has kept a low profile this campaign.
With Paul out of the picture, Democrats think their chances have greatly improved. The Democratic National Campaign Committee has given Lampson $5,000, according to Federal Election Commission reports. Lampson also has outraised Weber, who owns an air conditioning and heating business and has loaned himself $226,500 in the race.
"It may be (Republican-leaning)," Lampson said of the district. "But in the case of the congressional race, with the two people that are in it, I honestly believe it will not perform in that way. I'm different."
The district is different than before, too.
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Paul's Texas district becomes Election Day fight
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Ron Paul's district becomes an Election Day fight
Posted: at 1:22 am
By PAUL J. WEBER Associated Press
LEAGUE CITY, Texas (AP) - 1 of the few competitive Election Day races in Texas is a seat that hasn't been up for grabs in more than a decade: Ron Paul's congressional district.
The former presidential candidate is retiring from Congress after more than 20 years. Most of that was spent representing in the 14th Congressional District, where Republican Randy Weber and Democrat Nick Lampson are vying to become Paul's successor.
Weber is a state lawmaker who burnished a reputation as 1 of the most conservative members in the Texas Legislature. Lampson is trying to return to Congress, and is running as a moderate in a redrawn district that is no longer as firmly Republican.
Paul seldom worried about losing. He was re-elected with at least 60% of the vote his last six tries.
Copyright 2012 The Associated Press. All rights reserved. This material may not be published, broadcast, rewritten or redistributed.
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Ron Paul's district becomes an Election Day fight
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