{"id":210406,"date":"2017-08-08T03:47:14","date_gmt":"2017-08-08T07:47:14","guid":{"rendered":"http:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/researchers-retract-a-paper-when-they-realize-they-had-sequenced-the-wrong-snails-genome-retraction-watch-blog\/"},"modified":"2017-08-08T03:47:14","modified_gmt":"2017-08-08T07:47:14","slug":"researchers-retract-a-paper-when-they-realize-they-had-sequenced-the-wrong-snails-genome-retraction-watch-blog","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/researchers-retract-a-paper-when-they-realize-they-had-sequenced-the-wrong-snails-genome-retraction-watch-blog\/","title":{"rendered":"Researchers retract a paper when they realize they had sequenced the wrong snail&#8217;s genome &#8211; Retraction Watch (blog)"},"content":{"rendered":"<p><p>        Researchers in China    thought they had sequenced the genomes of two snails that help    transmit diseases to other species  an important first step to    stopping the spread. But their hopes were soon dashed after    they realized they had misidentified one of the snails.  <\/p>\n<p>    The researchers published their findings earlier this    year in the journal Parasites &    Vectors. In the paper, the authors stressed    that understanding the genetic makeup of these molluscs is    important because many freshwater snails are intermediate    hosts for flatworm parasites and transmit infectious diseases    to humans and other animals. They also acknowledged that    identifying snail species from their appearance alone can be    tricky.  <\/p>\n<p>    Indeed, not long after the study was published, a reader    raised concerns that the authors had misidentified one of the    snails. After re-examining their data, the authors realized    their mistake: They had not checked their results against    a     genome database, called     Basic Local Alignment Search Tool    (BLAST), which compares biological sequences    against known ones and finds regions of similarity. If they    had, the authors may have discovered they had sequenced the    wrong species.  <\/p>\n<p>    Heres theretraction    notice for The    complete mitochondrial genomes of two freshwater snails provide    new protein-coding gene rearrangement models and phylogenetic    implications, published in January    2017:  <\/p>\n<p>      The authors are retracting this article [1]. A reader      recently raised questions related to the identification of      one of the snail species whose complete mitochondrial (mt)      genomes have been characterised in our article, because the      gene order and mt genome sequence of the sample of Radix      swinhoei (family Lymnaeidae) strongly resemble those of      Physella acuta (family Physidae) (GenBank JQ390525.1 and      JQ390526.1) published by Nolan et al. [2].    <\/p>\n<p>      The initial morphology-based identification of the      snail as Radix swinhoei was not tested with BLAST searches      and as a result we did not realise that we had characterised      the mitochondrial genome of a different species. Upon      re-examination of our data, we suggest that the sample Radix      swinhoei does in fact represent a species of Physella      (referred to as Physella sp.). Because of this      misidentification and the fact that the phylogenetic analysis      did not include members of the family Physidae, the      conclusions drawn from the Radix swinhoei sample in our      article are incorrect.    <\/p>\n<p>      All authors agree with this retraction.    <\/p>\n<p>    We contacted the papers corresponding author, Yinchan    Hu, based at the Chinese Academy of Fishery Sciences in the    Ministry of Agriculture in Guangzhou, as well as the first    author, Xidong Mu, and second-to-last author, Hongmei Song,    both based at the same institution. We will update the post if    we hear back.   <\/p>\n<p>    Hat tip: Rolf Degen  <\/p>\n<p>    Like Retraction Watch? Consider making a        tax-deductible contribution to support our    growth. You can also follow    us on    Twitter, like us     on Facebook, add us to    your RSS    reader, sign up on our    homepage    for an email every time theres a new post, or    subscribe to our daily    digest. Click     here to review our Comments Policy. For    a sneak peek at what were working on,     click here.  <\/p>\n<\/p>\n<p><!-- Auto Generated --><\/p>\n<p>See the original post:<br \/>\n<a target=\"_blank\" href=\"http:\/\/retractionwatch.com\/2017\/08\/07\/researchers-sequenced-wrong-snails-genome-retract-paper\/\" title=\"Researchers retract a paper when they realize they had sequenced the wrong snail's genome - Retraction Watch (blog)\">Researchers retract a paper when they realize they had sequenced the wrong snail's genome - Retraction Watch (blog)<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> Researchers in China thought they had sequenced the genomes of two snails that help transmit diseases to other species an important first step to stopping the spread. But their hopes were soon dashed after they realized they had misidentified one of the snails.  <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/researchers-retract-a-paper-when-they-realize-they-had-sequenced-the-wrong-snails-genome-retraction-watch-blog\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":7,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[25],"tags":[],"class_list":["post-210406","post","type-post","status-publish","format-standard","hentry","category-genome"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/210406"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/7"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=210406"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/210406\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=210406"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=210406"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=210406"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}