{"id":194380,"date":"2017-05-23T22:25:03","date_gmt":"2017-05-24T02:25:03","guid":{"rendered":"http:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/homo-naledi-genome-will-we-ever-find-this-elusive-key-to-human-evolution-the-guardian\/"},"modified":"2017-05-23T22:25:03","modified_gmt":"2017-05-24T02:25:03","slug":"homo-naledi-genome-will-we-ever-find-this-elusive-key-to-human-evolution-the-guardian","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/homo-naledi-genome-will-we-ever-find-this-elusive-key-to-human-evolution-the-guardian\/","title":{"rendered":"Homo naledi genome: Will we ever find this elusive key to human evolution? &#8211; The Guardian"},"content":{"rendered":"<p><p>  Homo naledi may have lived at the same time as the first modern  humans. Left: Neo skull of Homo naledi. Right: Omo 2 skull,  one of the earliest modern humans. Photo credit: Wits University\/  John Hawks Photograph: Wits University<\/p>\n<p>    Despite what many people believe, paradigm-shifting moments in    science - where our understanding of a particular explanation    is challenged by a single finding - are actually quite rare.    But one happened in paleoanthropology on 9 May    with the publication of three linked    papers describing new    fossils belonging to the enigmatic hominin Homo    naledi.<\/p>\n<p>    Many people tend to think of human evolution as a very linear    path: from primitive creatures more or less directly to    ourselves. But for most of the history of evolution, there were    multiple species of hominins running (or climbing) around the    African landscape, each with their own unique physical    adaptations to the challenges of survival. As with all    evolutionary experiments, some of these adaptations proved more    successful than others. Based on careful study of fossils    spanning millions of years in Africa, paleoanthropologists    thought they had a good understanding of how the experiments    results unfolded. Human evolution wasnt a straight progression    by any means, but more like a complicated bush, with branches    leading off in many directions. Still, there were definite    trends that made their way into our textbooks. Hominin lineages    with some trait combinations died off without leaving any    descendants. In the lineages that persisted, brains got bigger,    legs longer, arms shorter, fingers less curved, teeth smaller.  <\/p>\n<p>    It mostly made sense, and the new species discovered in a South    African cave in 2015 seemed initially to fit within this    paradigm. Homo naledi, as it was called, had some very    primitive morphological features that meant it was likely very    ancient indeed - possibly 2 million years ago, close to the    root of our genus Homo.  <\/p>\n<p>    But the recent discovery    of a new set of H. naledi remains, in a separate    chamber of the same cave system, and the first direct    dates of the earlier H. naledi skeletons, has    challenged this tidy story. Shockingly, the remains dated to    just 236-335,000 years ago. This makes H. naledi very    young: contemporaneous with early modern H. sapiens    elsewhere in Africa. Yet, as the new fossils confirmed, H.    naledi possessed a weird mosaic of primitive (ancient) and    derived (more human-like) traits, such as small brain sizes    (roughly a third of the size as ours: you can see the    difference in the picture above) but human-like hands and    limbs.  <\/p>\n<p>    One reason this has paleoanthropologists in an uproar is that    it means some features, such as small brain sizes, persisted    long after they thought it possible. Berger et al.    suggests that in light of this, we perhaps should be concerned    about fossils which we have assigned to species on the basis of    morphology rather than direct dates. If some remains have been    misclassified, we may need to change our ideas about how    different hominin lineages evolved. Another implication of    these dates is that these hominins were around South Africa    when stone tools began to be made. While they havent been    found in association with any tools in the cave, we must still    be open to the possibility that these small brained hominins    could have made them. Finally, whether or not the H.    naledi remains were deliberately buried inside the cave    remains an extremely contentious issue among    paleoanthropologists. These possibilities - both still    unverified - pose a robust challenge for    archaeologists to grapple with.<\/p>\n<p>    Notably, there are some things that these fossils wont change:    1) We are indeed the product of evolution (Im anticipating    some of the comments on this post inevitably challenging    evolution. Sorry guys, the evidence is incontrovertible and the    fact that scientists change their minds as to the details when    new discoveries are made speaks to the strength of the    scientific process, not the weakness of the theory). 2) Humans    originated in Africa, 3) There were multiple kinds of hominins    co-existing for much of human evolution, 4) Humans are likely    descended from H. erectus, with subsequent ancestry    from some of the other kinds of hominins (Denisovans,    Neanderthals, and probably others).  <\/p>\n<p>    So where does H. naledi fit within the overall picture    of human evolution in Africa? Its still unresolved. Berger et al.    suggested three scenarios: First, H. naledi belongs to    one of the lineages leading to H. habilis, H. rudolfensis,    H. floresiensis, and A. sediba. Alternatively,    H. naledi is younger - a sister lineage to the clade    that contains H. erectus and the big-brained later    hominins (including H. sapiens). The final scenario is    that H. naledi is even younger still - a sister    lineage to H. sapiens. Another possibility is that    H. naledi is the result of hybridisation between two    or more lineages, perhaps one related to humans and one related    to Australopithecines.  <\/p>\n<p>    The unusual combination of primitive and derived features of    H. naledi make distinguishing between the above    scenarios difficult without genetic evidence. If we could get a    genome from one or more H. naledi individuals, we    could determine the phylogenetic relationship between it and    the big-brained hominins: H. sapiens and H.    neanderthalensis (we dont yet know the brain size of    Denisovans). This would tell us whether or not human    populations had ancestry from this group (and perhaps others).  <\/p>\n<p>    On a bioarchaeological level (assuming we could get DNA from    multiple individuals in the cave), we could ask whether H.    naledi individuals buried in the cave were close    relatives, and whether there was a relationship between burial    location and genetic relatedness. The answers to these    questions might give us some insights into the social structure    of the species, whether the individuals buried within the cave    constituted a single population close in time, or whether there    is detectable genetic change over time in the individuals    within the cave. We could also use the molecular clock to    estimate the time of divergence of H. naledi to the    other hominins.  <\/p>\n<p>    Ancient DNA could answer a lot of questions regarding H.    naledis ancestry and relationships, but unfortunately    were not there yet. While the dates of these fossils fit    comfortably within the range at which we can obtain ancient DNA    (currently up to ~560780,000    years ago), Berger et al. notes in their paper    that attempts to obtain aDNA from H. naledi remains    have thus far proven unsuccessful. One of the team members, Dr    John Hawks, noted on    twitter in a conversation with myself and others that three    separate ancient DNA labs have actually made the attempt    without any luck (ours at the University of Kansas wasnt one    of them, for the record), but that they will    keep trying.<\/p>\n<p>    This is an important reminder of just how difficult and    frustrating ancient DNA research can be, and if theres    anything I wish the interested public would know about it, its    this: Behind the exciting news that comes out every month about    this ancient genome or that lie scores of failed attempts, and    the frustrated tears of many graduate students.<\/p>\n<p>    Ancient DNA preservation depends on many    different variables, such as the temperature(s), UV    radiation, and pH the remains have been subjected to, the    type of    bone, tooth, or tissue being sampled, and the amount of    water, salinity, microbes, and oxygen present in the    depositional context. This is why some very ancient bones will    yield their genetic secrets, while ones just a few hundreds of    years old wont no matter how hard you try. Furthermore,    morphological preservation of bone doesnt always correspond    with biomolecular preservation, and we cant necessarily know    in advance whether DNA will be present in a skeleton before we    attempt to recover it. Thus ancient DNA researchers must always    be mindful about addressing important questions, be responsible    about sampling fossils, and not commit too many resources    (particularly money and time) to samples which wont work.    Knowing when to stop working on a sample that wont    yield DNA is almost as important as determining which samples    to attempt in the first place.<\/p>\n<p>    Will we ever get a H. naledi genome? Based on the    hints weve gotten so far, the odds dont look great. Just as    with H. floresiensis, the other small-brained    hominin that persisted until quite recently (50,000 years ago),    their position in our family tree looks to remain unclear for a    while - a lesson to us about how much we still have to learn.    But if I werent relentlessly optimistic, I wouldnt have    lasted long in the world of ancient DNA research. Perhaps it    will just take a little more time and luck. Weve certainly    seen these two variables in abundance throughout the remarkable    story of H. naledis discovery.<\/p>\n<p>    Berger et al. Homo naledi and Pleistocene hominin    evolution in subequatorial Africa. eLife 2017;6:e24234. DOI:    <a href=\"http:\/\/dx.doi.org\/10.7554\/eLife.24234\" rel=\"nofollow\">http:\/\/dx.doi.org\/10.7554\/eLife.24234<\/a>  <\/p>\n<p>    Dirks PHGM et al. The age of Homo naledi and associated    sediments in the Rising Star Cave, South Africa. eLife    2017;6:e24231 DOI: <a href=\"http:\/\/dx.doi.org\/10.7554\/eLife.24231\" rel=\"nofollow\">http:\/\/dx.doi.org\/10.7554\/eLife.24231<\/a>  <\/p>\n<p>    Hawks J et al. New fossil remains of Homo naledi from the    Lesedi Chamber, South Africa. eLife 2017;6:e24232. DOI:    <a href=\"http:\/\/dx.doi.org\/10.7554\/eLife.24232\" rel=\"nofollow\">http:\/\/dx.doi.org\/10.7554\/eLife.24232<\/a>  <\/p>\n<p>    Thompson JC. Human evolution: New opportunities rising. eLife    2017;6:e26775 DOI: <a href=\"http:\/\/dx.doi.org\/10.7554\/eLife.26775\" rel=\"nofollow\">http:\/\/dx.doi.org\/10.7554\/eLife.26775<\/a>  <\/p>\n<p><!-- Auto Generated --><\/p>\n<p>Read more here:<br \/>\n<a target=\"_blank\" href=\"https:\/\/www.theguardian.com\/science\/2017\/may\/23\/homo-naledi-genome-will-we-ever-find-this-elusive-key-to-human-evolution\" title=\"Homo naledi genome: Will we ever find this elusive key to human evolution? - The Guardian\">Homo naledi genome: Will we ever find this elusive key to human evolution? - The Guardian<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> Homo naledi may have lived at the same time as the first modern humans. Left: Neo skull of Homo naledi.  <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/homo-naledi-genome-will-we-ever-find-this-elusive-key-to-human-evolution-the-guardian\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[25],"tags":[],"class_list":["post-194380","post","type-post","status-publish","format-standard","hentry","category-genome"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/194380"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=194380"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/194380\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=194380"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=194380"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=194380"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}