{"id":16309,"date":"2013-07-08T06:50:13","date_gmt":"2013-07-08T10:50:13","guid":{"rendered":"http:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/how-the-attempt-to-sequence-bigfoots-genome-went-badly-off-track\/"},"modified":"2013-07-08T06:50:13","modified_gmt":"2013-07-08T10:50:13","slug":"how-the-attempt-to-sequence-bigfoots-genome-went-badly-off-track","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/how-the-attempt-to-sequence-bigfoots-genome-went-badly-off-track\/","title":{"rendered":"How the attempt to sequence \u201cBigfoot\u2019s genome\u201d went badly off track"},"content":{"rendered":"<p><p>    Aurich Lawson  <\/p>\n<p>    When we     first looked at the report of the bigfoot genome, it was an    odd mixture of things: standard methods and reasonable looking    data thrown in with unusual approaches and data that should    have raised warning flags for any biologist. We just couldn't    figure out the logic of why certain things were done or the    reasoning behind some of the conclusions the authors reached.    So, we spent some time working with the reported genome    sequences themselves and talked with the woman who helped put    the analysis together, Dr. Melba Ketchum. While it didn't    answer all of our questions, it gave us a clearer picture of    how the work came to be.  <\/p>\n<p>    The biggest clarification made was what the team behind the    results considered their scientific reasoning, which makes    sense of how they ran past warning signs that they were badly    off track. It provided an indication of what motivated them to    push the results into a publication that they knew would cause    them grief.  <\/p>\n<p>    The public face of the bigfoot genome has been     Melba Ketchum, a Texas-based forensic scientist. It was    Ketchum who first announced    that a genome was in the works, and she was the lead author of    the paper that eventually described it. That paper became the    one and only publication of the online journal De    Novo; it's still the only one to appear there.  <\/p>\n<p>    The paper itself is an odd mix of things. There's a variety of    fairly standard molecular techniques mixed in with a bit of    folklore and a link to a YouTube video that reportedly shows a    sleeping Sasquatch. In some ways, the conclusions of the paper    are even odder than the video. They suggest that bigfeet aren't    actually an unidentified species of ape as you might have    assumed. Instead, the paper claims that bigfeet are hybrids,    the product of humans interbreeding with a still unknown    species of hominin.  <\/p>\n<p>    As evidence, it presents two genomes that purportedly came from    bigfoot samples. The mitochondrial genome, a small loop of DNA    that's inherited exclusively from mothers, is human. The    nuclear genome, which they've only sequenced a small portion    of, is a mix of human and other sequences. Some are closely    related, others quite distant.  <\/p>\n<p>    But my     initial analysis suggested that the \"genome sequence\" was    an artifact, the product of a combination of contamination,    degradation, and poor assembly methods. And every other    biologist I showed it to reached the same conclusion. Ketchum    couldn't disagree more. \"We've done everything in our power to    make sure the paper was absolutely above-board and well done,\"    she told Ars. \"I don't know what else we could have done short    of spending another few years working on the genome. But all we    wanted to do was prove they existed, and I think we did that.\"  <\/p>\n<p>    How do you get one group of people who looks at the evidence    and sees contamination, while another decides \"The data    conclusively prove that the Sasquatch exists\"? To find out, we    went through the paper's data carefully, then talked to Ketchum    to understand the reasoning behind the work.  <\/p>\n<p>    Fundamentally, the scientific problems with the work seem to go    back to the fact that some of the key stepssample processing    and preparationwere done by forensic scientists. As the name    itself implies, forensic science is, like more general    sciences, heavily focused on evidence, reproducibility, and    other aspects shared with less applied sciences. But unlike    genetics for example, forensic science is very goal-oriented.    That seems to be what caused the problems here.  <\/p>\n<p>    Over the decades that DNA has been used as forensic evidence,    people in the field have come up with a variety of procedures    that have been validated repeatedly. By following those    procedures, they know the evidence they generate is likely to    hold up in court. And, to an extent, it seems like the people    behind the bigfoot genome wanted it to hold up in court.  <\/p>\n<p><!-- Auto Generated --><\/p>\n<p>Go here to see the original:<br \/>\n<a target=\"_blank\" href=\"http:\/\/arstechnica.com\/science\/2013\/07\/an-honest-attempt-to-understand-the-bigfoot-genome-and-the-woman-who-created-it\/\" title=\"How the attempt to sequence \u201cBigfoot\u2019s genome\u201d went badly off track\">How the attempt to sequence \u201cBigfoot\u2019s genome\u201d went badly off track<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> Aurich Lawson When we first looked at the report of the bigfoot genome, it was an odd mixture of things: standard methods and reasonable looking data thrown in with unusual approaches and data that should have raised warning flags for any biologist.  <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/how-the-attempt-to-sequence-bigfoots-genome-went-badly-off-track\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[25],"tags":[],"class_list":["post-16309","post","type-post","status-publish","format-standard","hentry","category-genome"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/16309"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=16309"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/16309\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=16309"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=16309"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=16309"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}