{"id":12666,"date":"2013-04-11T06:49:32","date_gmt":"2013-04-11T10:49:32","guid":{"rendered":"http:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/affymetrix-and-biodiscovery-announce-software-for-analysis-of-whole-genome-copy-number-data-generated-from-ffpe-solid\/"},"modified":"2013-04-11T06:49:32","modified_gmt":"2013-04-11T10:49:32","slug":"affymetrix-and-biodiscovery-announce-software-for-analysis-of-whole-genome-copy-number-data-generated-from-ffpe-solid","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/affymetrix-and-biodiscovery-announce-software-for-analysis-of-whole-genome-copy-number-data-generated-from-ffpe-solid\/","title":{"rendered":"Affymetrix and BioDiscovery Announce Software for Analysis of Whole Genome Copy Number Data Generated From FFPE Solid &#8230;"},"content":{"rendered":"<p><p>    SANTA CLARA, Calif.--(BUSINESS WIRE)--  <\/p>\n<p>        Affymetrix, Inc. (AFFX)    and     BioDiscovery announce the availability of the Nexus for    OncoScan Software for analysis of whole genome copy    number data generated from formalin-fixed, paraffin-embedded    (FFPE) solid tumor samples using the     OncoScan FFPE Express 2.0 Service. Through a    joint arrangement, this software, based on BioDiscoverys    flagship Nexus Copy Number, is available to customers who are    analyzing data generated using this service.  <\/p>\n<p>    Obtaining high-quality copy number data using limited amounts    of DNA from degraded FFPE samples is extremely challenging for    cancer researchers. Utilizing Affymetrix unique Molecular    Inversion Probe (MIP) technology, the OncoScan FFPE assay is    capable of analyzing highly degraded DNA in FFPE tumor samples,    even from less than 100 ng of starting DNA material, and is    currently available as a service through Affymetrix Research    Service Laboratory (ARSL) based in Santa Clara, California.  <\/p>\n<p>    OncoScan FFPE Express 2.0 Service has been successfully used by    more than 30 leading cancer research institutes, including M.    D. Anderson Cancer Center, University of California San    Francisco, and the Huntsman Cancer Institute at the University    of Utah.  <\/p>\n<p>    Cancer translational researchers have been able to quickly and    easily analyze hundreds of degraded FFPE samples to correlate    copy number aberrations with outcomes data, said Andy Last,    Executive Vice President of the Genetic Analysis and Clinical    Applications Business Unit at Affymetrix. Nexus for OncoScan    Software is especially optimized for solid tumor copy number    analysis and can generate whole genome copy number calls from    raw data in minutes. We are very excited to continue to partner    with BioDiscovery to bring this powerful and easy-to-use    software to the cancer research community.  <\/p>\n<p>    \"The OncoScan FFPE assay is an amazing technology for cancer    researchers allowing them to unlock DNA information from masses    of archived FFPE samples to obtain high quality data,\" said    Soheil Shams, President of BioDiscovery. Combining the    powerful OncoScan FFPE technology with the proven power of    Nexus Copy Number gives scientists a unique solution that is    sure to accelerate cancer research, impact diagnosis, and    ultimately lead to better patient care and treatment. We are    very pleased to partner with Affymetrix in offering this    powerful solution.  <\/p>\n<p>    A next generation OncoScan FFPE product will be available in    late 2013 enabling researchers to perform the assay and    analysis in their own lab. Delivering results in about 48    hours, this new product will provide whole genome copy number    coverage with high resolution in known cancer genes, loss of    heterozygozity (LOH) as well as clinically relevant somatic    mutation data - all from a single assay. An updated version of    Nexus for OncoScan Software will be released in conjunction    with the launch.  <\/p>\n<p>    PLEASE NOTE: Affymetrix, the Affymetrix    logo, and OncoScan trademarks are the property of    Affymetrix, Inc. All other trademarks are the property of their    respective owners.  <\/p>\n<p>    Products mentioned in this release are for research use only.    Not for diagnostic procedures.  <\/p>\n<p>    Forward-looking statements  <\/p>\n<p><!-- Auto Generated --><\/p>\n<p>View original post here:<br \/>\n<a target=\"_blank\" href=\"http:\/\/finance.yahoo.com\/news\/affymetrix-biodiscovery-announce-software-analysis-103000738.html;_ylt=A2KJ3CQplWZReGgAJsb_wgt.\" title=\"Affymetrix and BioDiscovery Announce Software for Analysis of Whole Genome Copy Number Data Generated From FFPE Solid ...\">Affymetrix and BioDiscovery Announce Software for Analysis of Whole Genome Copy Number Data Generated From FFPE Solid ...<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> SANTA CLARA, Calif.--(BUSINESS WIRE)-- Affymetrix, Inc.  <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/affymetrix-and-biodiscovery-announce-software-for-analysis-of-whole-genome-copy-number-data-generated-from-ffpe-solid\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[25],"tags":[],"class_list":["post-12666","post","type-post","status-publish","format-standard","hentry","category-genome"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/12666"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=12666"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/12666\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=12666"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=12666"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=12666"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}