{"id":1124344,"date":"2024-04-27T12:09:17","date_gmt":"2024-04-27T16:09:17","guid":{"rendered":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/uncategorized\/earth-life-biodiversity-vast-dna-tree-of-life-for-flowering-plants-revealed-astrobiology-astrobiology-news\/"},"modified":"2024-04-27T12:09:17","modified_gmt":"2024-04-27T16:09:17","slug":"earth-life-biodiversity-vast-dna-tree-of-life-for-flowering-plants-revealed-astrobiology-astrobiology-news","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/dna\/earth-life-biodiversity-vast-dna-tree-of-life-for-flowering-plants-revealed-astrobiology-astrobiology-news\/","title":{"rendered":"Earth Life Biodiversity: Vast DNA Tree Of life For Flowering Plants Revealed &#8211; Astrobiology &#8211; Astrobiology News"},"content":{"rendered":"<p><p>          Strelitzia is a genus of five species of perennial          plants, native to South Africa. It belongs to the plant          family Strelitziaceae. A common name of the genus is bird          of paradise flower\/plant, because of a resemblance of its          flowers to birds-of-paradise. In South Africa, it is          commonly known as a crane flower.  Wikipedia        <\/p>\n<p>    The most up-to-date understanding of the flowering plant tree    of life is presented in a new study published today in the    journal Nature by an international team of 279 scientists,    including three University of Michigan biologists.  <\/p>\n<p>    Using 1.8 billion letters of genetic code from more than 9,500    species covering almost 8,000 known flowering plant genera (ca.    60%), this achievement sheds new light on the evolutionary    history of flowering plants and their rise to ecological    dominance on Earth.  <\/p>\n<p>    Led by scientists at the Royal Botanic Gardens, Kew, the    research team believes the data will aid future attempts to    identify new species, refine plant classification, uncover new    medicinal compounds, and conserve plants in the face of climate    change and biodiversity loss.  <\/p>\n<p>    The major milestone for plant science, involving 138    organizations internationally, was built on 15 times more data    than any comparable studies of the flowering plant tree of    life. Among the species sequenced for this study, more than 800    have never had their DNA sequenced before.  <\/p>\n<p>    The sheer amount of data unlocked by this research, which would    take a single computer 18 years to process, is a huge stride    toward building a tree of life for all 330,000 known species of    flowering plantsa massive undertaking by Kews Tree of Life    Initiative.  <\/p>\n<p>    Analyzing this unprecedented amount of data to decode the    information hidden in millions of DNA sequences was a huge    challenge. But it also offered the unique opportunity to    reevaluate and extend our knowledge of the plant tree of life,    opening a new window to explore the complexity of plant    evolution, said Alexandre Zuntini, a research fellow at Royal    Botanic Gardens, Kew.  <\/p>\n<p>    Tom Carruthers, postdoctoral researcher in the lab of U-M    evolutionary biologist Stephen Smith, is co-lead author of the    study with Zuntini, who he previously worked with at Kew. U-M    plant systematist Richard Rabeler is a co-author.  <\/p>\n<p>    All 64 orders, all 416 families and 58% (7,923) of    genera are represented. The young tree is illustrated here    (maximum constraint at the root node of 154Ma), with branch    colours representing net diversification rates. Black dots at    nodes indicate the phylogenetic placement of fossil    calibrations based on the updated AngioCal fossil calibration    dataset. Note that calibrated nodes can be older than the age    of the corresponding fossils owing to the use of minimum age    constraints. Arcs around the tree indicate the main clades of    angiosperms as circumscribed in this paper. ANA grade refers to    the three consecutively diverging orders Amborellales,    Nymphaeales and Austrobaileyales. Plant portraits illustrating    key orders were sourced from Curtiss Botanical Magazine    (Biodiversity Heritage Library). These portraits, by S.    Edwards, W. H. Fitch, W. J. Hooker, J. McNab and M. Smith, were    first published between 1804 and 1916 (for a key to    illustrations see Supplementary Table 2). A high-resolution    version of this figure can be downloaded from <a href=\"https:\/\/doi.org\/10.5281\/zenodo.10778206\" rel=\"nofollow\">https:\/\/doi.org\/10.5281\/zenodo.10778206<\/a>    (ref. 55).  <\/p>\n<p>    Flowering plants feed, clothe and greet us whenever we walk    into the woods. The construction of a flowering plant tree of    life has been a significant challenge and goal for the field of    evolutionary biology for more than a century, said Smith,    co-author of the study and professor in the U-M Department of    Ecology and Evolutionary Biology. This project moves us closer    to that goal by providing a massive dataset for most of the    genera of flowering plants and offering one strategy to    complete this goal.  <\/p>\n<p>    Smith had two roles on the project. First, members of his    labincluding former U-M graduate student Drew Larsontraveled    to Kew to help sequence members of a large and diverse plant    group called Ericales, which includes blueberries, tea, ebony,    azaleas, rhododendrons and Brazil nuts.  <\/p>\n<p>    Second, Smith supervised the analyses and construction of the    project dataset along with William Baker and Felix Forest of    the Royal Botanic Gardens, Kew, and Wolf Eisenhardt of Aarhus    University.  <\/p>\n<p>    One of the biggest challenges faced by the team was the    unexpected complexity underlying many of the gene regions,    where different genes tell different evolutionary histories.    Procedures had to be developed to examine these patterns on a    scale that hadnt been done before, said Smith, who is also    director of the Program in Biology and an associate curator in    biodiversity informatics at the U-M Herbarium.  <\/p>\n<p>    As co-leader of the study, Carruthers main responsibilities    included scaling the evolutionary tree to time using 200    fossils, analyzing the different evolutionary histories of the    genes underlying the overall evolutionary tree, and estimating    rates of diversification in different flowering plant lineages    at different times.  <\/p>\n<p>    Hebarium speciment from 1832  Trepocarpus aethusae     RBG Kew  <\/p>\n<p>    Constructing such a large tree of life for flowering plants,    based on so many genes, sheds light on the evolutionary history    of this special group, helping us to understand how they came    to be such an integral and dominant part of the world,    Carruthers said. The evolutionary relationships that are    presentedand the data underlying themwill provide an    important foundation for a lot of future studies.  <\/p>\n<p>    The flowering plant tree of life, much like our own family    tree, enables us to understand how different species are    related to each other. The tree of life is uncovered by    comparing DNA sequences between different species to identify    changes (mutations) that accumulate over time like a molecular    fossil record.  <\/p>\n<p>    Our understanding of the tree of life is improving rapidly in    tandem with advances in DNA sequencing technology. For this    study, new genomic techniques were developed to magnetically    capture hundreds of genes and hundreds of thousands of letters    of genetic code from every sample, orders of magnitude more    than earlier methods.  <\/p>\n<p>    A key advantage of the teams approach is that it enables a    wide diversity of plant material, old and new, to be sequenced,    even when the DNA is badly damaged. The vast treasure troves of    dried plant material in the worlds herbarium collections,    which comprise nearly 400 million scientific specimens of    plants, can now be studied genetically.  <\/p>\n<p>    In many ways this novel approach has allowed us to collaborate    with the botanists of the past by tapping into the wealth of    data locked up in historic herbarium specimens, some of which    were collected as far back as the early 19th century, said    Baker, senior research leader for Kews Tree of Life    Initiative.  <\/p>\n<p>    Our illustrious predecessors, such as Charles Darwin or Joseph    Hooker, could not have anticipated how important these    specimens would be in genomic research today. DNA was not even    discovered in their lifetimes. Our work shows just how    important these incredible botanical museums are to    groundbreaking studies of life on Earth. Who knows what other    undiscovered science opportunities lie within them?  <\/p>\n<p>    Across all 9,506 species sequenced, more than 3,400 came from    material sourced from 163 herbaria in 48 countries.  <\/p>\n<p>    Sampling herbarium specimens for the study of plant    relationships makes broad sampling from diverse areas of the    world much more feasible than if one had to travel to get fresh    material from the field, said U-Ms Rabeler, a research    scientist emeritus and former collection manager at the U-M    Herbarium.  <\/p>\n<p>    For the tree of life project, Rabeler helped verify the    identity of herbarium specimens selected for sampling and    analyzed the resulting data.  <\/p>\n<p>    Flowering plants alone account for about 90% of all known plant    life on land and are found virtually everywhere on the    planetfrom the steamiest tropics to the rocky outcrops of the    Antarctic Peninsula. And yet, our understanding of how these    plants came to dominate the scene soon after their origin has    baffled scientists for generations, including Darwin.  <\/p>\n<p>    Flowering plants originated more than 140 million years ago    after which they rapidly overtook other vascular plants    including their closest living relativesthe gymnosperms    (nonflowering plants that have naked seeds, such as cycads,    conifers and ginkgo).  <\/p>\n<p>    Darwin was mystified by the seemingly sudden appearance of such    diversity in the fossil record. In an 1879 letter to Hooker,    his close confidant and director of the Royal Botanic Gardens,    Kew, he wrote: The rapid development as far as we can judge of    all the higher plants within recent geological times is an    abominable mystery.  <\/p>\n<p>    Using 200 fossils, the authors scaled their tree of life to    time, revealing how flowering plants evolved across geological    time. They found that early flowering plants did indeed explode    in diversity, giving rise to more than 80% of the major    lineages that exist today shortly after their origin.  <\/p>\n<p>    However, this trend then declined to a steadier rate for the    next 100 million years until another surge in diversification    about 40 million years ago, coinciding with a global decline in    temperatures. These new insights would have fascinated Darwin    and will surely help todays scientists grappling with the    challenges of understanding how and why species diversify.  <\/p>\n<p>    Assembling a tree of life this extensive would have been    impossible without Kews scientists collaborating with many    partners across the globe. In total, 279 authors were involved    in the research, representing many different nationalities from    138 organizations in 27 countries.  <\/p>\n<p>    The plant community has a long history of collaborating and    coordinating molecular sequencing to generate a more    comprehensive and robust plant tree of life. The effort that    led to this paper continues in that tradition but scales up    quite significantly, said U-Ms Smith.  <\/p>\n<p>    The flowering plant tree of life has enormous potential in    biodiversity research. This is because, just as one can predict    the properties of an element based on its position in the    periodic table, the location of a species in the tree of life    allows us to predict its properties. The new data will thus be    invaluable for enhancing many areas of science and beyond.  <\/p>\n<p>    To enable this, the tree and all of the data that underpin it    have been made openly and freely accessible to both the public    and scientific community, including through the    Kew Tree of Life    Explorer.  <\/p>\n<p>    Open access will help scientists to make the best use of the    data, such as combining it with artificial intelligence to    predict which plant species may include molecules with    medicinal potential.  <\/p>\n<p>    Similarly, the tree of life can be used to better understand    and predict how pests and diseases are going to affect plants    in the future. Ultimately, the authors note, the applications    of this data will be driven by the ingenuity of the scientists    accessing it.  <\/p>\n<p>    Phylogenomics and the rise    of the Angiosperms, Nature (open access)  <\/p>\n<p>    Astrobiology, Genomics,  <\/p>\n<p><!-- Auto Generated --><\/p>\n<p>Visit link:<br \/>\n<a target=\"_blank\" href=\"https:\/\/astrobiology.com\/2024\/04\/earth-life-biodiversity-vast-dna-tree-of-life-for-flowering-plants-revealed.html\" title=\"Earth Life Biodiversity: Vast DNA Tree Of life For Flowering Plants Revealed - Astrobiology - Astrobiology News\" rel=\"noopener\">Earth Life Biodiversity: Vast DNA Tree Of life For Flowering Plants Revealed - Astrobiology - Astrobiology News<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> Strelitzia is a genus of five species of perennial plants, native to South Africa. It belongs to the plant family Strelitziaceae.  <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/dna\/earth-life-biodiversity-vast-dna-tree-of-life-for-flowering-plants-revealed-astrobiology-astrobiology-news\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[26],"tags":[],"class_list":["post-1124344","post","type-post","status-publish","format-standard","hentry","category-dna"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/1124344"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=1124344"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/1124344\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=1124344"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=1124344"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=1124344"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}