{"id":1121060,"date":"2024-01-16T21:18:02","date_gmt":"2024-01-17T02:18:02","guid":{"rendered":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/uncategorized\/discovering-fusions-requires-more-than-dna-testing-in-gi-cancers-onclive\/"},"modified":"2024-01-16T21:18:02","modified_gmt":"2024-01-17T02:18:02","slug":"discovering-fusions-requires-more-than-dna-testing-in-gi-cancers-onclive","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/dna\/discovering-fusions-requires-more-than-dna-testing-in-gi-cancers-onclive\/","title":{"rendered":"Discovering Fusions Requires More Than DNA Testing in GI Cancers &#8211; OncLive"},"content":{"rendered":"<p><p>    As targeted therapies in colorectal, gastroesophageal, biliary    tract, and other gastrointestinal (GI) cancers continue to gain    traction, and as additional therapeutic targets for novel    agents emerge, consistently testing for biomarkers will be key    to identifying more targetable alterations for novel    therapeutics and determining which patients will benefit most    from these therapies, according to E. Gabriela Chiorean, MD.  <\/p>\n<p>    With the November 16, 2023, FDA approval of pembrolizumab    (Keytruda) plus fluoropyrimidine- and platinum-based    chemotherapy for the first-line treatment of adult patients    with locally advanced unresectable or metastatic HER2-negative    gastric or gastroesophageal junction (GEJ)    adenocarcinoma,1 another    immunotherapy option has joined nivolumab (Opdivo) in the    treatment paradigm.2  <\/p>\n<p>    When considering how to best incorporate recently approved    agents into care, Chiorean explained that pembrolizumab plus    fluoropyrimidine- and platinum-based chemotherapy adds to the    immune checkpoint inhibitor data that investigators already    have with nivolumab. The 2021 approval of nivolumab in    combination with fluoropyrimidine- and platinum-containing    chemotherapy for patients with advanced or metastatic gastric    cancer, GEJ cancer, and esophageal adenocarcinoma was supported    by findings from the phase 3 CheckMate 649 study (NCT02872116).    Patients with a combined positive score (CPS) of at least 5 who    received the combination experienced a statistically    significant improvement vs chemotherapy alone in    progression-free survival (HR, 0.68; 95% CI, 0.58-0.79;    P< .0001) and overall survival (OS; HR 0.71; 95%    CI, 0.61-0.83; P< .0001). Irrespective of CPS    score, all patients receiving the combination achieved a    statistically significant improvement vs chemotherapy alone in    OS (HR, 0.80; 95% CI, 0.71-0.90;    P=.0002).2  <\/p>\n<p>    Nivolumab has been approved [by the FDA] for patients with    HER2-negative gastroesophageal cancer [and its] mostly used    for patients with [a] CPS of more than 5, Chiorean said in an    interview with OncologyLive. Chiorean is a full    professor of medicine at the University of Washington, clinical    director of the GI Medical Oncology Program at Fred Hutchinson    Cancer Center, and director of the Clinical Research GI    Oncology Program at the University of Washington\/Fred    Hutchinson Cancer Center in Seattle.  <\/p>\n<p>    Pembrolizumab has been approved irrespective of CPS, but we    are very aware that the benefit is mostly for patients with a    CPS higher than 1 or even higher than 10, she explained.    Immunotherapies for advanced gastroesophageal cancers do apply    for those with positive PD-L1 expression, whether its a CPS    score more than 1, more than 5, or more than 10, depending on    what immune checkpoint inhibitors we use.  <\/p>\n<p>    As gene alterations become more prevalent therapeutic targets,    DNA and RNA testing is of the upmost importance. Findings from    a diagnostic study published in JAMA Oncology    examining paired DNA and RNA sequencing of 43,524 individuals    who underwent germline testing for hereditary cancer revealed    that RNA evidence was necessary for the classification of 17.1%    of pathogenic or likely pathogenic splicing variants.    Additionally, 71.1% of existing splicing variants of uncertain    significance were resolved by evidence from RNA tests.    Investigators concluded that concurrent RNA and DNA sequencing    improves detection of novel variants and classification of    existing ones.3  <\/p>\n<p>    Its exciting to apply these new therapeutics based on the    targeted alterations that we findwe just have to test    everybody, Chiorean said. We also have to be very careful to    include both DNA testing as well as RNA testing because we may    miss certain genetic alterations if we exclusively use DNA    tests. There are RNA-based tests that can be more effective in    finding genetic fusions, such as NRG1 fusions and    RET fusions. These fusions are important because now    we have agents targeting them.  <\/p>\n<p>    Pralsetinib (Gavreto) and selpercatinib (Retevmo) are both    targeted agents included in the National Comprehensive Cancer    Network guidelines for the treatment of patients with    unresectable and metastatic biliary tract cancers with    RET fusions.4    Additionally, selpercatinib holds an indication for patients    with locally advanced or metastatic solid tumors with    RET fusions who have progressed on or following prior    systemic treatment or who have no satisfactory alternative    treatment options.5  <\/p>\n<p>    We need to make sure we test [for] everythingmicrosatellite    instability[MSI] status, tumor mutational burden, DNA,    and RNAin order to discover all the possible targetable    alterations of our patients, because there are more and more    treatments available, both in clinical trials and with FDA    approvals.... Every tumor needs to be sequenced and when its    not available we need to test [for] these molecular    abnormalities with liquid biopsies [and] with circulating tumor    [ct]DNA, Chiorean said.  <\/p>\n<p>    Approximately 50% of patients with colorectal cancer (CRC) will    develop colorectal liver metastasesclinically heterogeneous    lesions associated with poor prognosis.6,7 In a retrospective study conducted in    China that examined the genomic alterations of CRC liver    metastases in 144 patients using next-generation sequencing,    investigators found that the most prevalent alterations were    TP53 (83%), APC (69%), KRAS (43%),    and SMAD4 (17%).7  <\/p>\n<p>    We know that certain cancers are more likely to shed ctDNA in    the bloodpancreatic cancer tends to be a cancer [that is] less    positive [for] ctDNA, but in CRCs, especially in those with    liver metastases, liquid biopsies are very useful, Chiorean    said.  <\/p>\n<p>    Shooting For The Stars With Biomarkers  <\/p>\n<p>    Moreover, we are trying to conduct more tests regarding how we    can declare whether the patient is immune competent vs not. How    do we determine the immune microenvironment that could be more    amenable to be targeted with immunotherapies or not? Chiorean    asked. These are very new biomarkers, which are not genetic    based; they are more [representative of] a profile having to do    with a tumor microenvironment and the host that the patient    represents. We are doing a lot of research in this arena in    terms of finding new markers for immune therapeutics [and] for    stroma-targeted therapies.  <\/p>\n<p>    In addition to the GI biomarkers of HER2 overexpression,    MSI-high status, and PD-L1 expression, emerging biomarkers    include CLDN18.2, which is present in approximately 30% of    gastric\/GEJ cancers, and FGFR2, which is rarer and reported in    approximately less than 10% of gastric cancers.8  <\/p>\n<p>    In July 2023, the FDA granted priority review to the biologics    license application seeking the approval of the first-in-class    monoclonal antibody zolbetuximab for the first-line treatment    of patients with locally advanced unresectable or metastatic    HER2-negative gastric or GEJ adenocarcinoma and    CLDN18.2-positive tumors.9  <\/p>\n<p>    Additionally, in April 2021, the novel FGFR2 inhibitor    bemarituzumab plus modified fluoropyrimidine, leucovorin, and    oxaliplatin (mFOLFOX6) received breakthrough therapy    designation from the FDA for the frontline treatment of    patients withFGFR2b-overexpressing,    HER2-negative metastatic and locally advanced gastric and GEJ    adenocarcinoma following positive results from the phase 2    FIGHT study (NCT03694522).10    Bemarituzumab is currently under investigation with mFOLFOX6 in    the phase 3 FORTITUDE-101 trial (NCT05052801) and with mFOLFOX6    and nivolumab in the phase 3 FORTITUDE-102 trial    (NCT05111626).10  <\/p>\n<p>    In addition, because [we can make] adoptive immunotherapies    more active and reactive against the patients cancer using the    patients human leukocyte antigen [HLA] testing, HLA testing is    becoming more important. Knowing the proteins that present an    antigen to the immune system such that patients may become able    to participate in adoptive immunotherapy trials [is important].    Biomarkers are being extended beyond next-generation    sequencing, Chiorean noted.  <\/p>\n<p>    Chiorean noted that upcoming presentations at the 9th    Annual School of Gastrointestinal Oncology (SOGO), which    is scheduled to take place on February 24, 2024, in Los    Angeles, California, will address these novel treatment options    in addition to various aspects of multidisciplinary care,    ranging from the nonoperative or operative management of stage    IV CRC to using targeted [therapy] and\/or immunotherapy in    early-stage gastroesophageal as well as hepatobiliary cancers.    [The treatment of patients with] hepatobiliary cancers is    typically very multidisciplinary because it involves surgery,    interventional radiology, radiation oncology, and medical    oncology.  <\/p>\n<p>    The American Cancer Society listed 11 regimens used to treat    stage IV colon cancer in August 2023, noting that these were    only some of the most commonly used regimens. Radiation and    surgery were also cited as options in certain cases.11  <\/p>\n<p>    A lot of debate exists in terms of managing stage IV CRC that    has been resected, oligometastatic disease that has been    resected, [and] the role of ctDNA. These sessions will be of    huge interest [at SOGO 2024] in order to understand the players    that have to be engaged in making treatment decisions for our    patients, Chiorean said.  <\/p>\n<p>    At SOGO 2024, sessions will include The Role of ctDNA in Colon    Tumor Management presented by Sidharth R. Anand, MD, MBA, who    is a medical oncologist and hematologist at UCLA Health in Los    Angeles, California, and Management of Stage IV no evidence of    disease [NED] CRC presented by Marwan G. Fakih, MD, who is a    medical oncologist, professor in the Department of Medical    Oncology & Therapeutics Research, associate director for    Clinical Sciences, medical director of the Briskin Center for    Clinical Research, division chief of GI Medical Oncology, and    co-director of the Gastrointestinal Cancer Program, all at City    of Hope in Duarte, California.  <\/p>\n<p>    [We] are looking at the RAS inhibitors, pan-RAS inhibitors,    [and] KRAS G12C inhibitors, both as monotherapy as well as in    combination therapies, Chiorean noted. Certainly, were also    looking at cancer vaccines [and] at oncolytic viruses. These    are very exciting agents that may [become a part of]    combination therapeutics with immune checkpoint inhibitors or    even chemotherapies. Indeed, there are several classes of    agents, both targeted as well as immune-based therapies, that    are very exciting and I look forward to 2024 [to see] more,    hopefully positive results.  <\/p>\n<p><!-- Auto Generated --><\/p>\n<p>View post:<br \/>\n<a target=\"_blank\" href=\"https:\/\/www.onclive.com\/view\/discovering-fusions-requires-more-than-dna-testing-in-gi-cancers\" title=\"Discovering Fusions Requires More Than DNA Testing in GI Cancers - OncLive\" rel=\"noopener\">Discovering Fusions Requires More Than DNA Testing in GI Cancers - OncLive<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> As targeted therapies in colorectal, gastroesophageal, biliary tract, and other gastrointestinal (GI) cancers continue to gain traction, and as additional therapeutic targets for novel agents emerge, consistently testing for biomarkers will be key to identifying more targetable alterations for novel therapeutics and determining which patients will benefit most from these therapies, according to E. Gabriela Chiorean, MD. With the November 16, 2023, FDA approval of pembrolizumab (Keytruda) plus fluoropyrimidine- and platinum-based chemotherapy for the first-line treatment of adult patients with locally advanced unresectable or metastatic HER2-negative gastric or gastroesophageal junction (GEJ) adenocarcinoma,1 another immunotherapy option has joined nivolumab (Opdivo) in the treatment paradigm.2 When considering how to best incorporate recently approved agents into care, Chiorean explained that pembrolizumab plus fluoropyrimidine- and platinum-based chemotherapy adds to the immune checkpoint inhibitor data that investigators already have with nivolumab <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/dna\/discovering-fusions-requires-more-than-dna-testing-in-gi-cancers-onclive\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[26],"tags":[],"class_list":["post-1121060","post","type-post","status-publish","format-standard","hentry","category-dna"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/1121060"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=1121060"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/1121060\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=1121060"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=1121060"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=1121060"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}