{"id":11057,"date":"2013-02-08T10:46:47","date_gmt":"2013-02-08T15:46:47","guid":{"rendered":"http:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/bgis-young-chinese-scientists-will-map-any-genome\/"},"modified":"2013-02-08T10:46:47","modified_gmt":"2013-02-08T15:46:47","slug":"bgis-young-chinese-scientists-will-map-any-genome","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/bgis-young-chinese-scientists-will-map-any-genome\/","title":{"rendered":"BGI&#39;s Young Chinese Scientists Will Map Any Genome"},"content":{"rendered":"<p><p>    When the workday ends at BGIs factory in Shenzhen, the    headquarters of the largest genome mapping company in the    world, its like a bell has gone off at math camp. The    companys scientists and technicians spill out of the doorways    of the building, baby-faced and wearing jeans and sneakers.    Some still have braces. Several young women link arms and skip    toward a bus line. Others head next door to the dorm or over to    the canteen where young couples are holding hands across    plastic trays. This work we do is tiring and requires focus,    says Liu Xin, a 26-year-old team leader in the bioinformatics    division, as he sinks into a couch in one of BGIs conference    rooms. So its good that they allow us to date.  <\/p>\n<p>    Liu is one of a small army of recent college graduates at BGIs    largest facility, a former shoe factory. Two gray buildings,    the factory and the dorm, are wedged between one of Shenzhens    industrial zonesa grid of high-rises, apartment buildings, and    several hospitals and medical equipment companiesand a lush,    jungly hill thats in the process of being bulldozed. Liu is    stocky and serious, glad that he already has a steady    girlfriend so he can focus on his career. He arrived at BGI    three years ago, a biology major from Peking University with    little experience in the study of the genome, the term for the    entirety of an organisms genetic information. Now hes one of    the senior people in his department. He works 12-hour days and    oversees the sequencing of multiple genomes at a time. He    specializes in plantshis team is currently sequencing a    species of orchid. The bioinformatics teams around him are    picking through the genomes of animals, microbial organisms,    humans, and anything else that comes with a genetic code.    Everyone is just out of college, he says. I am now more    sophisticated than most of the newcomers.  <\/p>\n<p>    Ten years after the mapping of the human genome, BGI has    established itself as the worlds largest commercial genetic    sequencer. The ranks of Chinas college graduates are expanding    faster than the country can employ them, and BGI is leveraging    this cheap, educated labor pool. At the factory in Shenzhen,    more than 3,000 employees (average age, 26) spend their days    preparing DNA samples, monitoring sequencing machines, and    piecing together endless strings of As, Cs, Ts, and Gs, the    building blocks of genetic material.  <\/p>\n<p>    This is big data analysis, says Wang Jun, BGIs 36-year-old    executive director. Wang, who regularly wears tennis shoes and    untucked polo shirts, has published more than 35 articles in    Science and Nature magazines and also teaches    at the University of Copenhagen. Genomics, he says, is a new    field and experts are being created from scratch. We dont    need Ph.D.s to do this work, Wang says. Instead, he believes    genomics is best learned the old-fashioned way. You just throw    them in, he says of BGIs technicians. The best way is    hands-on experience.            When the first draft of the human genome was    released in 2000 as part of the international Human Genome    Project, it seemed inevitable that scientists would soon crack    the codes of disease, health, and human development. But the    genome has proved more complicated. What scientists produced in    2000 was a long list of nucleotides, the combinations of    markers in DNA that specify the makeup of an organism. It was    just a list, and only a fraction of it is understood.    Scientists were quick to identify fragments of the genome that    translate into proteins, which control things like eye color,    but these make up only 1.5percent of the entire thing. As    geneticists like to put it, they produced a map without a    legend. This is where BGI comes in.  <\/p>\n<p>    Photograph by Luke Casey for Bloomberg    BusinessweekExecutive director    Wang Jun (left)  <\/p>\n<p>    The company was founded in 1999 with state funding to lead    Chinas participation in the Human Genome Project. We didnt    think about any business model; we basically didnt plan    further than the human genome, says Wang, who was brought on    in the early days of BGI to provide expertise in computers.    China, he points out, was the only developing country working    on the international project, and although the BGI team    contributed only 1percent of the finished project, it did    it quickly and with little previous experience. Even Bill    Clinton thanked us for our participation, he says. Wang joined    the project when he was just 22 and worked under BGIs two    founders, the scientists Wang Jian, then 45, and Yang Huanming,    then 47.  <\/p>\n<p>    For its next challenge, BGI decided to tackle rice, whose    genome is significantly shorter than that of humans but still    large enough to impress. We recruited a bunch of    undergraduates, and lots of them had no working experience on    any project, Wang Jun says. The schedule was tight; Wang and    his team barely slept. We can do these kind of crazy things in    BGI, he says. We can get 100 people together, very fresh, no    experience at all, and get it done.  <\/p>\n<p>    In 2002, BGI published a paper on the rice project in    Science and again attracted attention and money from    the Chinese government, though its a private company. The    company was rewarded with entry into the state-run Chinese    Academy of Sciences, a distinction that secured additional    funding. As part of CAS, however, BGI was limited to only 90    scientists. Its leaders had their eyes on expansion. Our boss    wanted to buy more sequencing machines, says Deng Wenxi, a    24-year-old communications officer at the BGI factory. But the    Beijing government would not support us. In 2007 the company    found a solution by way of Shenzhens city government, which    offered the factory 10million yuan (about $1.6 million in    todays exchange rates) to cover startup fees and    20million yuan in annual grants. The company changed its    name from Beijing Genomics Institute to BGI Shenzhen and moved    to the shoe factory. Beijing is more strict, says Deng.    Shenzhen wanted to welcome us. The factory, she says,    actually belongs to the Shenzhen government. When asked about    the move, Wang Jun answers the question a little more vaguely,    Well, he says, the weather is definitely nicer here.  <\/p>\n<p>    Today, BGI organizes its operations into three    categorieshealth care, agriculture, and the environment. When    scientists look at the genome, theyre looking for variations    from one individual to another, from species to species, or    population to population. Theyre looking to understand which    variations link to specific traits or diseases.  <\/p>\n<p>    As Wang Jun says, decoding any genome is a big data endeavor,    and theres no other research institution or for-profit    sequencing company in the world that has the capacity of BGI.    In health care, it offers straightforward sequencing services    for universities and corporations globally, which ask BGI to    sequence a genome and send it back for analysis. More often    than not, BGI works in partnerships to map, analyze, and    publish the findings.  <\/p>\n<p><!-- Auto Generated --><\/p>\n<p>Read more:<br \/>\n<a target=\"_blank\" href=\"http:\/\/www.businessweek.com\/articles\/2013-02-07\/bgis-young-chinese-scientists-will-map-any-genome?campaign_id=rss_null\" title=\"BGI&#39;s Young Chinese Scientists Will Map Any Genome\">BGI&#39;s Young Chinese Scientists Will Map Any Genome<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p> When the workday ends at BGIs factory in Shenzhen, the headquarters of the largest genome mapping company in the world, its like a bell has gone off at math camp. The companys scientists and technicians spill out of the doorways of the building, baby-faced and wearing jeans and sneakers <a href=\"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/transhuman-news-blog\/genome\/bgis-young-chinese-scientists-will-map-any-genome\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[25],"tags":[],"class_list":["post-11057","post","type-post","status-publish","format-standard","hentry","category-genome"],"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/11057"}],"collection":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/comments?post=11057"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/posts\/11057\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/media?parent=11057"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/categories?post=11057"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/prometheism-transhumanism-posthumanism\/wp-json\/wp\/v2\/tags?post=11057"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}