{"id":38969,"date":"2011-09-04T15:44:24","date_gmt":"2011-09-04T15:44:24","guid":{"rendered":"http:\/\/euvolution.com\/futurist-transhuman-news-blog\/an-attempt-at-%e2%80%9copen-science%e2%80%9d-gene-expression\/"},"modified":"2011-09-04T15:44:24","modified_gmt":"2011-09-04T15:44:24","slug":"an-attempt-at-%e2%80%9copen-science%e2%80%9d-gene-expression","status":"publish","type":"post","link":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/astronomy\/an-attempt-at-%e2%80%9copen-science%e2%80%9d-gene-expression.php","title":{"rendered":"An attempt at \u201copen science\u201d | Gene Expression"},"content":{"rendered":"<p>I was asked by the person who provided me the Tutsi genotype for detailed results. <b>Of course I would do so!<\/b> So I uploaded the raw csv files to <a rel=\"nofollow\" target=\"_blank\" href=\"https:\/\/docs.google.com\/leaf?id=0B8Tdg8RZEWOOMWRkYTg4YzItODdjNi00ZjZkLTk2ZWUtNzAzNDg2OWI0YzZj&amp;hl=en_US\">Google Docs<\/a>. The format and explanation isn&rsquo;t totally clear, though if you follow my posts you&rsquo;ll get it. This is for people who want more than pretty visualizations. But it did make me consider: <b>I do many ADMIXTURE and EIGENSOFT runs, and you only see a small minority.<\/b> This isn&rsquo;t optimal for readers who want to dig deeper, but it also results in possible unconscious bias. So I&rsquo;m going to try and do something different: I will post the raw results (at least in csv format) of all runs. But I obviously don&rsquo;t want to cluster this weblog with updates, so you have to do one of two things to get notifications:<\/p><p>1) Follow me on <a rel=\"nofollow\" target=\"_blank\" href=\"http:\/\/twitter.com\/#!\/razibkhan\">twitter<\/a><\/p><p>2) Add me on <a rel=\"nofollow\" target=\"_blank\" href=\"https:\/\/plus.google.com\/109962494182694679780\/posts\">Google+<\/a><\/p><p>At some point I might just start throwing stuff into a public folder, but that&rsquo;s often so user unfriendly that only those &ldquo;in the know&rdquo; can  decrypt what is what. My aim here is to resolve some confusions by posting all the results that I get to see. ...<img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/euvolution.com\/futurist-transhuman-news-blog\/wp-content\/plugins\/wp-o-matic\/cache\/18e53_TAfMlwsCY6I\" height=\"1\" width=\"1\" style=\"padding-left:10px; padding-right: 10px;\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/euvolution.com\/futurist-transhuman-news-blog\/wp-content\/plugins\/wp-o-matic\/cache\/fc9b6_-SPsvBd9VX4\" height=\"1\" width=\"1\" style=\"padding-left:10px; padding-right: 10px;\"><\/p>","protected":false},"excerpt":{"rendered":"<p>I was asked by the person who provided me the Tutsi genotype for detailed results. Of course I would do so! So I uploaded the raw csv files to Google Docs. The format and explanation isn&rsquo;t totally clear, though if &hellip; <a href=\"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/astronomy\/an-attempt-at-%e2%80%9copen-science%e2%80%9d-gene-expression.php\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"limit_modified_date":"","last_modified_date":"","_lmt_disableupdate":"","_lmt_disable":"","footnotes":""},"categories":[21],"tags":[],"class_list":["post-38969","post","type-post","status-publish","format-standard","hentry","category-astronomy"],"modified_by":null,"_links":{"self":[{"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/posts\/38969"}],"collection":[{"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/comments?post=38969"}],"version-history":[{"count":0,"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/posts\/38969\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/media?parent=38969"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/categories?post=38969"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.euvolution.com\/futurist-transhuman-news-blog\/wp-json\/wp\/v2\/tags?post=38969"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}